Genome Organization and Localization of the pufLM Genes of the Photosynthesis Reaction Center in Phylogenetically Diverse Marine Alphaproteobacteria

Genome organization, plasmid content and localization of the pufLM genes of the photosynthesis reaction center were studied by pulsed-field gel electrophoresis (PFGE) in marine phototrophic Alphaproteobacteria. Both anaerobic phototrophs (Rhodobacter veldkampii and Rhodobacter sphaeroides) and strictly aerobic anoxygenic phototrophs from the Roseobacter-Sulfitobacter-Silicibacter clade (Roseivivax halodurans, Roseobacter litoralis, Staleya guttiformis, Roseovarius tolerans, and five new strains isolated from dinoflagellate cultures) were investigated. The complete genome size was estimated for R. litoralis DSM6996^T to be 4,704 kb, including three linear plasmids. All strains contained extrachromosomal elements of various conformations (linear or circular) and lengths (between 4.35 and 368 kb). In strain DFL-12, a member of a putative new genus isolated from a culture of the toxic dinoflagellate Prorocentrum lima, seven linear plasmids were found, together comprising 860 kb of genetic information. Hybridization with probes against the pufLM genes of the photosynthesis gene cluster after Southern transfer of the genomic DNAs showed these genes to be located on a linear plasmid of 91 kb in R. litoralis and on a linear plasmid of 120 kb in S. guttiformis, theoretically allowing their horizontal transfer. In all other strains, the pufLM genes were detected on the bacterial chromosome. The large number and significant size of the linear plasmids found especially in isolates from dinoflagellates might account for the metabolic versatility and presumed symbiotic association with eukaryotic hosts in these bacteria.     

Research Commentary: Association of Zoonotic Pathogens with Fresh, Estuarine, and Marine Macroaggregates

Aquatic macroaggregates (flocs ≥0.5 mm) provide an important mechanism for vertical flux of nutrients and organic matter in aquatic ecosystems, yet their role in the transport and fate of zoonotic pathogens is largely unknown. Terrestrial pathogens that enter coastal waters through contaminated freshwater runoff may be especially prone to flocculation due to fluid dynamics and electrochemical changes that occur where fresh and marine waters mix. In this study, laboratory experiments were conducted to evaluate whether zoonotic pathogens (Cryptosporidium, Giardia, Salmonella) and a virus surrogate (PP7) are associated with aquatic macroaggregates and whether pathogen aggregation is enhanced in saline waters. Targeted microorganisms showed increased association with macroaggregates in estuarine and marine waters, as compared with an ultrapure water control and natural freshwater. Enrichment factor estimations demonstrated that pathogens are 2–4 orders of magnitude more concentrated in aggregates than in the estuarine and marine water surrounding the aggregates. Pathogen incorporation into aquatic macroaggregates may influence their transmission to susceptible hosts through settling and subsequent accumulation in zones where aggregation is greatest, as well as via enhanced uptake by invertebrates that serve as prey for marine animals or as seafood for humans.     

Teaching and Research at Marine Stations: Present Priorities, Future Directions

SYNOPSIS. A conflict exists at many universities today betweenthe demand to maintain a competitive position as a researchinstitution, contributing to the rapidly advancing scholarshipin science, and the need to provide available and sympatheticcommunication between undergraduate students and the most vigorousfaculty. This conflict is especially apparent at marine stations.A marine station is usually geographically and politically isolatedfrom the main campus with its advantage of size and opportunitiesto obtain and share sophisticated equipment used in today'sscience. There is also a historical trend of smaller teachinglaboratories evolving into larger research-oriented facilities.And, financial support is not as readily available for researchand education in natural history and whole animal biology, idealsubjects for study at marine stations, as it is for some otherfields. In this presentation I examine the following questions:1. What is the role of teaching at marine stations today? 2.What are some of the current pressures that conflict with thisrole? and 3. What are some solutions to these conflicts? I approachthese questions from my experience as a teacher and researchscientist at a small marine station which has been concernedwith undergraduate teaching. I propose that marine field stationsof diverse sizes and roles, both teaching and research, canbe and should be supported financially and that this supportof diversity will return strong health to marine science nationallyand internationally.     

北极海泥菌群的分离鉴定及生物学特性的初步研究

对从北极冰川海面下1500-4000m处的海泥样品中分离的8株冷适应细菌进行了生理特征和分子生物学研究。其中5株嗜冷菌、3株耐冷菌,利用16SrDNA通用引物对5株嗜冷菌基因组DNA进行扩增,测序得到其部分16SrDNA序列。经Blast调出与菌株16SrDNA同源的序列,按照Neighbor-Joining方法构建16SrDNA系统发育树。对8株细菌进行酶检测试验,结果表明其中有部分细菌产低温酶:N014产淀粉酶,R151产明胶酶,P371产纤维素酶。研究结果为进一步开发利用冷适应微生物产物提供参考依据。     

海洋宏基因组学研究进展

宏基因组学作为研究微生物种群生态分布、群体遗传特征和基因相互作用的新兴学科,在未培养微生物资源的开发利用上取得了突破性进展,已成为海洋等极端环境中分离与鉴定新型工业酶制剂的有效工具。综述海洋宏基因组学研究进展,以及宏基因组学领域中如新一代测序技术等,以期为从海洋环境中开发具有工业潜力和应用价值的新型生物催化剂提供参考。     

海洋放线菌研究的新进展

海洋放线菌由于其独特的代谢途径和合成新颖抗生素的能力,已经广泛引起人们的关注。本文就海洋放线菌在海洋环境中的分布、医药领域的应用及其相关研究方法进行了综述。     

海洋微生物胞外多糖结构与生物活性研究进展

海洋微生物胞外多糖结构和功能的特异性源于海洋特殊环境,对其研究具有重要的理论和应用价值。综述了海洋微生物胞外多糖的结构及其生物活性研究进展,展望了研究及应用前景。     

Terrestrial gastropod hosts of Parelaphostrongylus tenuis at the National Zoological Park's Conservation and Research Center, Virginia

Terrestrial gastropods at the National Zoological Park's Conservation and Research Center (CRC) near Front Royal, Virginia, were surveyed from June 1985 to May 1986, to assess their role in transmission of the meningeal worm, Parelaphostrongylus tenuis. A total of 670 gastropods representing 9 families and 18 species was collected. The slug Deroceras laeve accounted for 50.4% of the specimens collected. Parelaphostrongylus tenuis infections were found in 15 gastropods (2.2% prevalence) representing 5 species; 5 of the infected gastropods were D. laeve. New host records for this nematode are Ventridens collisella and Philomycus carolinianus. Infected gastropods were recovered from June through October 1985 and in May 1986. All 6 sampling locations yielded infected gastropods, suggesting this parasite is widely distributed at the CRC, and is therefore likely to continue to pose a serious threat to exotic ungulates maintained there for conservation and research purposes.     

Temperature, Food Availability, and the Development of Marine Invertebrate Larvae

SYNOPSIS. Marine invertebrates develop in waters that extendfrom the poles to the equator, experiencing the full range ofenvironmental temperature and food conditions. How selectionhas modified their development under the influence of thesetwo factors has been a matter of debate. In this paper we arguethat the primary influence on developmental rate is temperature,while other factors such as food availability are much lessimportant. From existing literature we demonstrate that (1)developmental rates of both lecithotrophic and planktotrophicasteroids decrease in a similar way from the tropics to thepoles, as they do also in other groups of invertebrates (echinoids,molluscs, crustaceans), and (2) rates of development at anyone temperature cluster around the function describing the effectof temperature, without any relationship to egg size, suggestingthat developmental rates are near the maximum for a given temperatureregardless of other variables such as nutrition. We also investigatedthe response of development to temperature in four species ofplanktotrophic asteroids, one tropical, one temperate, two polar.There was limited temperature compensation among these fourspecies, but little or no apparent ability to compensate forthe retarding effects of reduced temperature within species.Arrhenius analysis of the data suggests that Q₁₀ values forthe upper region of each species' tolerance range are approximately2, indicating that enzyme-based reactions have evolved to beclosely integrated with uncatalyzed, temperature-dependent,physicalchemical processes. Values of Q₁₀ at lower regions ofthe tolerance range, on the other hand, range between 9.5 and14.7, indicative of abrupt temperature-dependent shifts in reactionequilibria, or in the organization of macromolecules and membranes.We conclude that temperature itself, rather than egg size, food,or other variables, best explains observed latitudinal differencesin developmental rates in marine invertebrates.