A new immobilized cell system with protection against toxic solvents

A new immobilized cell system providing protection against toxic solvents was investigated so that normal fermentations could be carried out in a medium containing toxic solvents. The system consists of immobilized growing cells in Ca-alginate gel beads to which vegetable oils, which are inexpensive absorbents of solvents, had been added. The ethanol fermentation of Saccharomyces cerevisiae ATCC 26603 was used as a model fermentation to study the protection afforded by the system against solvent toxicities. The fermentation was inhibited by solvents such as 2-octanol, benzene, toluene, and phenol. Ethanol production of one batch was not finished even after 35 h using immobilized growing yeast cells in conventional Ca-alginate gel beads in an ethanol production medium (5% glucose) containing 0.1% 2-octanol, which is used as a solvent for liquid-liquid extraction and is one of the most toxic solvents in our experiments. With the new immobilized growing cell system using vegetable oils, however, four repeated batch fermentations were completed in 35 h. Castor oil provided even more protection than soy bean, olive, and tung oils, and it was possible to complete six repeated batches in 35 h. The immobilized cell system with vegetable oils also provided protection against other toxic solvents such as benzene and toluene. A possible mechanism for the protective function of the new immobilized cell system is discussed.     

Lipid extraction of tissues with a low-toxicity solvent

An improved method for extracting the lipids from tissues consists of the use of hexane:isopropanol, followed by a wash of the extract with aqueous sodium sulfate to remove nonlipid contaminants. This method has a number of advantages over the common usage of chloroform:methanol. The solvents are somewhat less toxic, interference in processing by proteolipid protein contamination is avoided, the two phase separate rapidly during the washing step, the solvent density is low enough to permit centrifugation of the homogenate as an alternative to filtration, the solvents are cheaper, and the washed extract can be applied to a chromatographic column with continuous monitoring of the elution in the far ultraviolet region. The new extraction method is inefficient for the extraction of gangliosides.     

Optimal selection of organic solvents for biocompatible extraction of beta-carotene from Dunaliella salina

In the aim of beta-carotene biocompatible extraction, toxicity of various pure solvents belonging to different homologous series has been investigated for Dunaliella salina. The results showed that solvents having logP(oct) > 5 or having a molecular weight over 150 g/mol can be considered biocompatible for this microalga. The membrane critical solvent concentration for each series of solvents has been calculated applying Osborne's model, showing that the aliphatic chlorinated hydrocarbon is the most toxic family studied. Mixtures of a biocompatible solvent (decane) with a toxic solvent (CH(2)Cl(2), MEK, MTBE) have been studied. The beta-carotene extraction ability of CH(2)Cl(2)-decane mixture was found six times more efficient than with pure decane. It has been demonstrated that the extraction ability of solvent depends on its affinity with the product extracted and on its concentration incorporated in the cellular membrane.     

Use of silica gel polymer for DNA extraction with organic solvents

Phenol and chloroform are the standard solvents used for DNA extraction. These solvents aid in the removal of protein and lipid from crude or partially purified cell extracts. Although the procedure is well established, the solvents are noxious, caustic, and unpleasant. We describe in this paper the use of a special blood collection tube to isolate the offensive organic solvents. With the use of silica gel polymer containing tubes, phenol, phenol:chloroform, or chloroform can be separated from the DNA containing aqueous phase in a rapid and safe manner. The method permits higher yields of DNA since the DNA is poured from the tube rather than aspirated with pipet.     

Ricerche sulla flsiologia della produzione di tossine in colture di Helminthospobium maydis Nishik. et Miy

Abstract

STUDIES ON THE PHYSIOLOGY OF TOXIN PRODUCTION BY HELMINTHO-SPORIUM MAYDIS NISHIK. ET MIY. CULTURES. — Helminthosporium maydis produces under artificial culture toxic metabolites, which are responsible of a reduction of wheat and corn rootlets growth, severe alterations in tomato shoots and young corn plants, and growth inhibition of some microrganisms.

Cultural conditions for growth and toxin production were studied. Different strains of the fungus vary in their ability of toxin production, the highest amounts being produced by each strain by somewhat different conditions. At least one toxic metabolite can be extracted by chloroform from the cultural filtrates, but probably more than one toxin is produced, and of them at least one is not extracted with organic solvents. Toxic substances can be extracted from the mycelia, but it is not yet possible identify the toxins obtained by the extraction of the mycelia with one or more of the toxic metabolites obtained by extraction of the cultural filtrates.     

萱草花瓣中类胡萝卜素分析样品的制备及UPCC-MS检测方法研究

以大苞萱草（Hemerocallis middendorfii Trautv.et Mey.）和‘原谅’萱草（H.‘Pardon Me’）为研究对象,对萱草属植物花瓣中类胡萝卜素的样品制备方法以及UPCC-MS定性和定量检测方法进行了研究。结果表明：（1）萱草花瓣类胡萝卜素样品制备过程中,不同的提取试剂、振荡方法及皂化方法对类胡萝卜素的提取效率均有显著影响,经过对提取结果的方差分析,确定最佳的样品制备方案为：提取试剂B丙酮：正己烷（3：5/V：V）、温控摇床振荡提取,常温皂化16 h;（2） UPCC-MS技术能在10 min内高效分离萱草花瓣中的类胡萝卜素,且使用的有毒化学试剂少,是检测类胡萝卜素的较好选择;（3）大苞萱草和原谅萱草花瓣中共含有20种类胡萝卜素物质,两者颜色不同,类胡萝卜素的组成和含量也存在差异。     

Toxicity of organic solvents used in situ in microbial fermentation

Summary Toxicity of organic solvents for in situ solvent extraction of carboxylic acids from aqueous solutions was studied on bacteria Bacillus subtillis and Acetobacter spp., yeasts Kluyveromyces marxianus and Pichia fermentans and fungi Aspergillus terreus and Rhizopus arrhizus. It has been found that trialkylamine and tributylphosphate are much more toxic than other carriers as trialkylphosphineoxide, triisobutylphosphinesulfide and trihexylphosphate. For R. arrhizus trihexylphosphate was found to be the less toxic solvent.     

Enhanced recovery of solavetivone from Agrobacterium transformed root cultures of Hyoscyamus muticus using integrated product extraction

The integrated recovery of solavetivone from fungus elicited "hairy root" cultures of Hyoscyamus muticus is examined using volatile organic solvents and solid-phase adsorbents in an external loop extraction configuration. Hexane and pentane are shown to be toxic when added directly to the culture; however, growth of roots is not inhibited when cultures are exposed to media saturated with these hydrocarbons. Solid-phase neutral adsorbents, XAD-7 and XAD-16, display higher capacity and better solavetivone partitioning capability than the hydrocarbons; however, their selectivity for the sesquiterpene solavetivone is poor in comparison with hexane. In both cases, the integration of product recovery through extraction resulted in a doubling of product formation by alleviating feedback repression. Implications of these results to the recovery of secondary metabolites from plant root cultures are discussed. (c) 1993 John Wiley & Sons, Inc.     

Solvent-tolerant bacteria for biotransformations in two-phase fermentation systems

Product removal from aqueous media poses a challenge in biotechnological whole-cell biotransformation processes in which substrates and/or products may have toxic effects. The assignment of an additional liquid solvent phase provides a solution, as it facilitates in situ product recovery from aqueous media. In such two-phase systems, toxic substrates and products are present in the aqueous phase in tolerable but still bioavailable amounts. As a matter of course, adequate organic solvents have to possess hydrophobicity properties akin to substrates and products of interest, which in turn involves intrinsic toxicity of the solvents used. The employment of bacteria being able to adapt to otherwise toxic solvents helps to overcome the problem. Adaptive mechanisms enabling such solvent tolerant bacteria to survive and grow in the presence of toxic solvents generally involve either modification of the membrane and cell surface properties, changes in the overall energy status, or the activation and/or induction of active transport systems for extruding solvents from membranes into the environment. It is anticipated that the biotechnological production of a number of important fine chemicals in amounts sufficient to compete economically with chemical syntheses will soon be possible by making use of solvent-tolerant microorganisms.     

Matrix solid-phase dispersion as a valuable tool for extracting contaminants from foodstuffs

This review updates our knowledge on matrix solid-phase dispersion (MSPD), a sample treatment procedure that is increasingly used for extracting/purifying contaminants from a variety of solid, semi-solid, viscous, and liquid foodstuffs. MSPD is primarily used because of its flexibility, selectivity, and the possibility of performing extraction and cleanup in one step, this resulting in drastically shortening of the analysis time and low consumption of toxic and expensive solvents. Technical developments and parameters influencing the extraction yield and selectivity are examined and discussed. Experimental results for the analysis of pesticides, veterinary drugs, persistent environmental chemicals, naturally occurring toxicants, and surfactants in food are reviewed.     

Matrix solid-phase dispersion as a valuable tool for extracting contaminants from foodstuffs

This review updates our knowledge on matrix solid-phase dispersion (MSPD), a sample treatment procedure that is increasingly used for extracting/purifying contaminants from a variety of solid, semi-solid, viscous, and liquid foodstuffs. MSPD is primarily used because of its flexibility, selectivity, and the possibility of performing extraction and cleanup in one step, this resulting in drastically shortening of the analysis time and low consumption of toxic and expensive solvents. Technical developments and parameters influencing the extraction yield and selectivity are examined and discussed. Experimental results for the analysis of pesticides, veterinary drugs, persistent environmental chemicals, naturally occurring toxicants, and surfactants in food are reviewed.     

A high-throughput protocol for extracting high-purity genomic DNA from plants and animals

DNA extraction techniques that employ the reversible binding of DNA to silica via chaotropic salts can deliver high-quality genomic DNA from plant and animal tissues, while avoiding the use of toxic organic solvents. Existing techniques that use this method are either prohibitively expensive, or are applicable to only a restricted set of taxa. Here we describe a cost-effective DNA extraction technique suitable for a wide range of plant and animal taxa that yields microgram quantities of high-molecular-weight genomic DNA at a throughput of 192 samples per day. Our technique is particularly robust for tissue samples that are insoluble or are rapidly discoloured or oxidized in standard DNA extraction buffers. We demonstrate the quality of DNA extracted using this method by applying the amplified fragment length polymorphism technique to plant species.     

Identification of the root of Punica granatum in galenic preparations using TLC

The alkaloids present in the root of "Punica granatum" have been extracted by two different methods: extraction by Soxlet and extraction by steam distillation. Then the extracts have been compared by TLC chromatography using different solvents and specific chromogen reagents. The presence of pseudo-pelletierine has been confirmed in both the extractive solution by reaction with conc. K2Cr2O7. The above results explains the toxic activity of the unsuitable galenic preparations.     

Direct solubilization of enzyme aggregates with enhanced activity in nonaqueous media

A protein solubilization method has been developed to directly solubilize protein clusters into organic solvents containing small quantities of surfactant and trace amounts of water. Termed "direct solubilization," this technique was shown to solubilize three distinct proteins - subtilisin Carlsberg, lipase B from Candida antarctica, and soybean peroxidase - with much greater efficiencies than extraction of the protein from aqueous solution into surfactant-containing organic solvents (referred to as extraction). More significant, however, was the dramatic increase in directly solubilized enzyme activity relative to extracted enzyme activity, particularly for subtilisin and lipase in polar organic solvents. For example, in THF the initial rate towards bergenin transesterification was ca. 70 times higher for directly solubilized subtilisin than for the extracted enzyme. Furthermore, unlike their extracted counterparts, the directly solubilized enzymes yielded high product conversions across a spectrum of non-polar and polar solvents. Structural characterization of the solubilized enzymes via light scattering and atomic force microscopy revealed soluble proteins consisting of active enzyme aggregates containing approximately 60 and 100 protein molecules, respectively, for subtilisin and lipase. Formation of such clusters appears to provide a microenvironment conducive to catalysis and, in polar organic solvents at least, may protect the enzyme from solvent-induced inactivation.     

A simple, rapid and effective method for total RNA extraction from Lentinula edodes

A rapid, inexpensive and reliable method for total RNA extraction from fruiting bodies of Lentinula edodes containing large quantities of polysaccharides and secondary metabolites is described. An initial extraction step using saturated NaCl solution facilitates the separation of nucleic acids from contaminants and, after further extraction with organic solvents and precipitation with 2-propanol, total RNA of high purity and suitable for applications such as cDNA synthesis, RT-PCR and Northern blot hybridization was obtained. The procedure may also have wider applicability for total RNA extraction from the tissues of other mushrooms.     

Ichtyotoxic activity of extracts from Mexican marine macroalgae

Seventy-three species of macroalgae from the Mexican Pacific, Atlantic and Caribbean coast were screened for ichtyotoxic activity. Ethanolic, acetonic and aqueous extracts were prepared and tested against the fish Carassius auratus. The extracts were classified on the basis of their effects as: toxic if the fish died in two hours or less; moderately toxic, if the organism behaved abnormally but death did notoccur, and non-toxic if the fish did not display any change. 79% species were ichtyotoxic to some degree. Extracts of 39 species were toxic, with at least one extract with lethal effects, 19 were moderately toxic and 15 species were non-toxic. Only the extracts ofDictyota bartayresiana, Dictyota cervicornis,Lobophora variegata, Bryothamnion triquetrum and Laurencia obtusa were toxic in all three solvents. The acetone and ethanol extracts were more active, and therefore are more suitable for extraction of toxic substances. This revised version was published online in August 2006 with corrections to the Cover Date.     

Integrated and convenient procedure for protein extraction from formalin‐fixed,paraffin‐embedded tissues for LC‐MS/MS analysis

Because fresh‐frozen tissue samples associated with long‐term clinical data and of rare diseases are often unobtainable at the present time, formalin‐fixed paraffin‐embedded (FFPE) tissue samples are considered a highly valuable resource for researchers. However, protein extraction from FFPE tissues faces challenges of deparaffinization and cross‐link reversion. Current procedures for protein extraction from FFPE tissue require separate steps and toxic solvents, resulting in inconvenience in protein extraction. To overcome these limitations, an integrated method was developed using nontoxic solvents in four types of FFPE tissues. The average amount of proteins from three replicates of bladder, kidney, liver, and lung FFPE tissues were 442.6, 728.9, 736.4, and 694.7 μg with CVs of 7.5, 5.8, 2.4, and 4.5%, respectively. Proteomic analysis showed that 348, 417, 607, and 304 unique proteins were identified and quantified without specification of isoform by a least two peptides from bladder, kidney, liver, and lung FFPE tissue samples, respectively. The analysis of individual protein CV demonstrated that 97–99% of the proteins were quantified with a CV ≤ 30%, verifying the reproducibility of the integrated protein extraction method. In summary, the developed method is high‐yield, reproducible, convenient, simple, low cost, nonvolatile, nonflammable, and nontoxic.     

Optimization of polyphenol extraction from red grape pomace using aqueous glycerol/tartaric acid mixtures and response surface methodology

Grape pomace is a food industry waste containing a high burden of antioxidant polyphenols and several methodologies have been developed for their efficient extraction. However, a sustainable and environmentally friendly process should involve recovery means composed of benign, non-toxic solvents, such as tartaric acid and glycerol, which are natural food constituents. In this line, this study examined the extraction of polyphenols using aqueous tartaric acid/glycerol solutions. The aim was to assess the role of acid and glycerol concentration in the extraction yield, employing a Box-Behnken experimental design and response surface methodology. The results showed that solutions containing only glycerol (20%, w/v) are more suitable for retrieving polyphenols, flavonoids, and pigments from grape pomace, while tartaric acid exerted a negative effect in this regard, when tested at concentrations up to 2% (w/v).     

Extraction of lactic acid with colloidal liquid aphrons and comparison of their toxicities with solvents without surfactant on the viability of Lactobacillus rhamnosus

Colloidal liquid aphrons (CLAs) are surfactant-stabilized solvent droplets which have recently been explored for predispersed solvent extraction (PDSE). We have compared the equilibrium distribution of lactic acid with solvent alone and with CLAs. In spite of the short contact time in the PDSE process with CLAs, there was little difference in equilibrium distribution with solvent alone. The toxicity of extractants and diluents on Lactobacillus rhamnosus was measured for in situ extraction. Long chain alcohols such as 1-octanol and 1-decanol were less toxic among diluents. CLAs reduced the toxicity of solvents on Lactobacillus rhamnosus.     

Measurement of inorganic orthophosphate in biological materials: Extraction properties of butyl acetate

The properties of several organic solvents were investigated to determine their suitability for use in phosphomolybdic acid (PMA) extraction procedures for the measurement of inorganic orthophosphate (P_i). Butyl acetate exhibited the most satisfactory properties for measurements at 310 nm, which is the absorption peak for unreduced PMA. Butyl acetate exhibits essentially no absorption at 310 nm, is highly selective for PMA over molybdate and silicomolybdate, does not extract molybdate in the presence of trichloroacetic acid (TCA), exhibits negligible volume changes when equilibrated with equal volumes of aqueous phase, and is among the least toxic of organic solvents. Optimal conditions of acidity, molybdate concentration, and reaction and extraction times were determined for the formation of PMA and extraction into butyl acetate. A procedure for measurement of P_i in biological material employing 8% TCA for precipitation of organic material at 0°C, reaction of the supernatant with acid molybdate, extraction of the PMA with butyl acetate and reading of unreduced PMA at 310 nm is described. The procedure is simple, rapid, accurate, selective, and has high sensitivity. Because of the short (20 sec) sample exposure to acid molybdate, it is suggested that the procedure may also be useful in the measurement of P_i in the presence of adenosine triphosphate such as for the assay of adenosinetriphosphatase activity.