The importance of physiological ecology in conservation biology

Many of the threats to the persistence of populations of sensitivespecies have physiological or pathological mechanisms, and thosemechanisms are best understood through the inherently integrativediscipline of physiological ecology. The desert tortoise waslisted under the Endangered Species Act largely due to a newlyrecognized upper respiratory disease thought to cause mortalityin individuals and severe declines in populations. Numeroushypotheses about the threats to the persistence of desert tortoisepopulations involve acquisition of nutrients, and its connectionto stress and disease. The nutritional wisdom hypothesis positsthat animals should forage not for particular food items, butinstead, for particular nutrients such as calcium and phosphorusused in building bones. The optimal foraging hypothesis suggeststhat, in circumstances of resource abundance, tortoises shouldforage as dietary specialists as a means of maximizing intakeof resources. The optimal digestion hypothesis suggests thattortoises should process ingesta in ways that regulate assimilationrate. Finally, the cost-of-switching hypothesis suggests thatherbivores, like the desert tortoise, should avoid switchingfood types to avoid negatively affecting the microbe communityresponsible for fermenting plants into energy and nutrients.Combining hypotheses into a resource acquisition theory leadsto novel predictions that are generally supported by data presentedhere. Testing hypotheses, and synthesizing test results intoa theory, provides a robust scientific alternative to the popularuse of untested hypotheses and unanalyzed data to assert theneeds of species. The scientific approach should focus on hypothesesconcerning anthropogenic modifications of the environment thatimpact physiological processes ultimately important to populationphenomena. We show how measurements of such impacts as nutrientstarvation, can cause physiological stress, and that the endocrinemechanisms involved with stress can result in disease. Finally,our new syntheses evince a new hypothesis. Free molecules ofthe stress hormone corticosterone can inhibit immunity, andthe abundance of "free corticosterone" in the blood (thoughtto be the active form of the hormone) is regulated when thecorticosterone molecules combine with binding globulins. Thesex hormone, testosterone, combines with the same binding globulin.High levels of testosterone, naturally occurring in the breedingseason, may be further enhanced in populations at high densities,and the resulting excess testosterone may compete with bindingglobulins, thereby releasing corticosterone and reducing immunityto disease. This sequence could result in physiological andpathological phenomena leading to population cycles with a periodthat would be essentially impossible to observe in desert tortoise.Such cycles could obscure population fluctuations of anthropogenicorigin.     

The importance of anatomical structural study of roots for the understanding of physiological processes

Abstract

Besides being species‐specific, the inner structure of the root is influenced by the place and time of origin during the growth period. From the root tip up to the base of a particular root, the zones of cell division, cell elongation, formation of root hairs and root branching can be distinguished. The root tip that is covered by a root cap and mucilage is protected against evaporation and water contact. From the end of the lateral parts of the root cap, the cells become exposed to the surrounding environment. The cells can elongate by water uptake or can shrink by water loss. All processes of geotropic growth take place there. In this study, some differences are illustrated using Zea mays plants. Radicle and roots emerging from several nodes of the shoot as well as lateral roots are compared. The distances from the tip and from the base of the root are also very important for characterization of particular root functions. Distinctive features such as root diameter, size of the stele and of the cortex, ratio of cortex to stele, number and width of the xylem vessels, size of cells, special thickenings and stage of lignification as well as symptoms of maturation are observed.     

The importance of avoiding chemical contamination for a successful cultivation of marine organisms

1. Using 6 phytoplankton species and/or the copepodEuterpina acutifrons or larvae of the sea urchinArbacia lixula the potential inhibitory effects of chemicals released from some 70 different materials (mainly plastics) have been tested. In addition, the effects of 6 detergents have been examined. 2. Several materials, such as natural rubbers and polyvinyl chlorides, are highly toxic and should never be used when experimenting with living marine organisms. 3. Teflon (Algoflon), Perspex, Polyethylene, Tygon, Polypropylene, Polycarbonates (Makrolon) and Polyester (Gabraster) have been shown to be non-toxic and are, therefore, suitable for use in cultivation of marine organisms. Some materials had slightly negative effects on the organisms tested and should, therefore, be used only if no alternatives are available. 4. Some suggestions are advanced on how to construct non-toxic samplers and laboratory equipment used for experiments with marine organisms.     

The importance of body reserves for successful reproduction in the Tawny owl (Strix aluco)

One-quarter of Tawny owl nests fail to hatch young, mainly because the eggs are chilled and/or deserted. In 1973–74 automatic photography was employed at four nests near Oxford to relate the incubation behaviour of females to the ration of prey supplied to them by their mates. The eggs did not hatch in two nests and young fledged from only one of the others. Females were less attentive at the nests which failed during incubation and on average received less prey, but even at successful nests there were some nights when the female was supplied with less than her estimated daily food requirement. Female Tawny owls accumulate large reserves of fat and protein before laying. These buffer against any temporary inability of the male to provide sufficient food during incubation, and enable the female to stay on the nest rather than hunt for herself and risk the eggs becoming chilled. When prey are scarce, many females do not lay at all, and the ultimate factor determining whether breeding takes place may be the female's ability to acquire body reserves sufficient to provide a chance of breeding successfully.     

The importance of regeneration studies to the successful conservation management of Scottish rare plants

Summary

Maintaining successful regeneration is clearly essential to the conservation management of threatened plants. We examine some of the considerations necessary to determine whether regeneration is successful.     

Systematic analysis of the physiological importance of deubiquitinating enzymes

Deubiquitinating enzymes (DUBs) are proteases that control the post-translational modification of proteins by ubiquitin and in turn regulate diverse cellular pathways. Despite a growing understanding of DUB biology at the structural and molecular level, little is known about the physiological importance of most DUBs. Here, we systematically identify DUBs encoded by the genome of Drosophila melanogaster and examine their physiological importance in vivo. Through domain analyses we uncovered 41 Drosophila DUBs, most of which have human orthologues. Systematic knockdown of the vast majority of DUBs throughout the fly or in specific cell types had dramatic consequences for Drosophila development, adult motility or longevity. Specific DUB subclasses proved to be particularly necessary during development, while others were important in adults. Several DUBs were indispensable in neurons or glial cells during developmental stages; knockdown of others perturbed the homeostasis of ubiquitinated proteins in adult flies, or had adverse effects on wing positioning as a result of neuronal requirements. We demonstrate the physiological significance of the DUB family of enzymes in intact animals, find that there is little functional redundancy among members of this family of proteases, and provide insight for future investigations to understand DUB biology at the molecular, cellular and organismal levels.     

Evolutionary and physiological importance of hub proteins

It has been claimed that proteins with more interaction partners (hubs) are both physiologically more important (i.e., less dispensable) and, owing to an assumed high density of binding sites, slow evolving. Not all analyses, however, support these results, probably because of biased and less-than reliable global protein interaction data. Here we provide the first examination of these issues using a comprehensive literature-curated dataset of well-substantiated protein interactions in Saccharomyces cerevisiae. Whereas use of less reliable yeast two-hybrid data alone can reject the possibility that local connectivity correlates with measures of dispensability, in higher quality datasets a relatively robust correlation is observed. In contrast, local connectivity does not correlate with the rate of protein evolution even in reliable datasets. This perhaps surprising lack of correlation with evolutionary rate appears in part to arise from the fact that hub proteins do not have a higher density of residues associated with binding. However, hub proteins do have at least one other set of unusual features, namely rapid turnover and regulation, as manifest in high mRNA decay rates and a large number of phosphorylation sites. This, we suggest, is an adaptation to minimize unwanted activation of pathways that might be mediated by adventitious binding to hubs, were they to actively persist longer than required at any given time point. We conclude that hub proteins are more important for cellular growth rate and under tight regulation but are not slow evolving.     

Size-related intraspecific variability in physiological traits of vascular epiphytes and its importance for plant physiological ecology

Intraspecific variation in the physiological characteristics of plant organs due to differences in genotype, environmental heterogeneity, or developmental stage is a generally accepted phenomenon, whereas plant size is much less recognised by ecophysiologists as an important source of phenotypic variation. This review argues that size-related intraspecific variability may be found in most plants, but is possibly most pronounced and rather predictable among vascular epiphytes; individuals differing in size by just a few centimetres may show considerable variation in physiological properties such as photosynthetic capacity or in situ leaf carbon gain. Unfortunately, the lack of attention given to plant size in ecophysiological experiments may lead to ambiguities in the interpretation of published data. Although the “optimal partitioning theory” provides a useful framework for the interpretation of these size-related changes, the exact mechanism behind the phenomenon is still unclear. For example, it is important to distinguish size effects from those due to age. Regardless of the reason, however, the mere fact that plant size consistently correlates with physiological properties calls for attention to plant size in future studies.     

The importance of grazing intensity and frequency for physiological responses of the tropical seagrass Thalassia hemprichii

Seagrass grazing is an intrinsic disturbance in primarily tropical and subtropical areas. While there is a general parabolic response in seagrass growth to grazing intensity, there is less knowledge on the role of grazing frequency, as well as potential interactions between grazing intensity and frequency. This study experimentally investigated physiological responses in Thalassia hemprichii to simulated (leaf cutting) grazing regimes with different intensities (25% vs. 75%) and frequencies (1 times vs. 3 times) over 35 days in Chwaka Bay (Zanzibar, Tanzania). The results showed that the two high-intensity treatments (75% removal) had 37–41% lower growth rate than the low-intensity/low-frequency treatment, and rhizome sugar and starch content were both affected in a similar way. A 36% lower starch content in the simulated low-intensity/high-frequency regime (25% × 3) compared to the one of low-intensity/low-frequency (25% × 1) also shows an interaction between grazing intensity and frequency. This suggests that high-intensity (and to some extent frequency) grazing regimes, in comparison to low-intensity regimes, could negatively affect T. hemprichii growth, energy reserves, and thereby the ability to deal with additional stress like light limitation or grazing.     

The reproductive potential and importance of key management aspects for successful Calluna vulgaris rejuvenation on abandoned Continental heaths

The abandonment of traditional pastoralism as well as the use of heath areas for military purposes has had a major impact on dry heaths in the Continental biogeographical region of Europe, causing severe degradation of its key species Calluna vulgaris (L.) HULL. The reproductive potential of this species in a Continental climate is assumed to be low, although there is yet no observational or experimental evidence for this. More knowledge is also needed about cost‐effective and sustainable measures to restore abandoned dry heaths in this biogeographical region, because traditional management options are often too expensive (e.g., sod‐cutting) or restricted due to environmental laws and the danger of unexploded ammunition (e.g., burning). Using as an example an 800 ha Continental heathland in Germany that has been abandoned for about two decades, we studied the reproductive potential (seed production, soil seed bank, and germination ability) of degenerate C. vulgaris stands. In addition, we conducted a comprehensive field experiment to test the effects of low‐intensity, year‐round grazing by Heck cattle and Konik horses as well as one‐time mowing and patchy exposure of bare soil on the generative rejuvenation (i.e., recruitment and survival) of degenerate C. vulgaris stands over 3 years. We used generalized linear mixed models for statistical analyses. Seed production of degenerate C. vulgaris stands was high as well as the germination ability of their seeds, being similar to Atlantic heathlands. However, soil seed‐bank densities were lower than those found in managed or abandoned Atlantic heaths. Overall seedling recruitment in the field was considerably lower in comparison with Atlantic heaths. Low‐intensity grazing or one‐time mowing did not induce a substantial increase in C. vulgaris recruitment, whereas an additional one‐time creation of bare soil patches or the one‐time creation of bare soil without subsequent management significantly facilitated seedling recruitment and survival in the first year. However, from the second year on, the positive effect of the creation of bare soil without subsequent management was no longer present. In the third year, survival of juveniles was significantly supported by low‐intensity grazing in combination with shallow soil disturbances as well as in combination with one‐time mowing and shallow soil disturbances, whereas mowing alone resulted in marginally significant lower survival. The extremely low seedling recruitment requires a careful choice of suitable management measures to promote the survival of sufficient numbers of Calluna individuals. Therefore, we recommend low‐intensity grazing with free‐ranging robust breeds and the combination of this with one‐time mowing as an effective means of supporting generative rejuvenation of C. vulgaris in degraded heaths. However, at the beginning of the restoration process, the creation of bare soil patches for seedling recruitment is crucial. For implementation into practice, we present different strategies to enhance the proportion of bare soil after long‐term abandonment of heaths when traditional management options are no longer feasible.     

The cryptochrome family of blue/UV-A photoreceptors

The structural and functional properties of cryptochrome blue light receptors ofArabidopsis thaliana are described. Cryptochromes from ferns and algae, as well as a cryptochrome-like sequences from mammals, are discussed. The extended abstract of a paper presented at the 13th International Symposium in Conjugation with Award of the International Prize for Biology “Frontier of Plant Biology”     

Structure and physiological importance of angiotensin converting enzyme domains

Somatic angiotensin converting enzyme (ACE) consists of two homologous catalytic domains (N- and C-domain), exhibiting different biochemical properties. The catalytically active ACE isoforms consisted of just one domain have been also detected in mammals. Substantial progress in ACE domain research was achieved during the last years, when their crystal structures were determined. The crystal structures of domains in complex with diverse potent ACE inhibitors provided new insights into structure-based differences of the domain active sites. Physiological functions of ACE are not limited by regulation of the cardiovascular system. Recent evidence suggests that the ACE domains may be also involved into control of different physiological functions. The C-terminal catalytic domain plays an important role in the regulation of blood pressure: it catalyzes angiotensin I cleavage in vivo. The N-domain contributes to the processing of other bioactive peptides for which it exhibits high affinity. The role of the N-domain is not ultimately associated with functioning of the rennin-angiotensin system and it contributes processing of other bioactive peptides for which it exhibits high affinity (goralatide, luliberin, enkephalin heptapeptide, beta-amyloid peptide). Domain-selective inhibitors selectively blocking either the N- or C-domain of ACE have been developed.     

The basic importance of the physiological approach in clinical medicine: the experience in the area of hypertension

Since Claude Bernard the physiological approach has dramatically contributed to the unprecedented progress that clinical medicine has seen during the second half of the 19th and throughout the 20th century. If I go back to about fifty years ago, when I started as a medical student and investigator under the guidance of Giuseppe Moruzzi and Cesare Bartorelli our understanding of arterial hypertension was very small and our therapeutic abilities close to nothing, but progressive knowledge of the physiology of the sympathetic nervous system, of the kidney, of the renin-angiotensin system, etc, led to a progressive understanding of the mechanisms of elevated blood pressure and to the development of an array of effective blood pressure lowering drugs, thanks to which hypertension is now a controllable disease. The supremacy of the physiological approach to clinical medicine has been recently endangered by the rising of two new approaches, whose worshippers consider the ultimate ones promising solid conclusions and unforeseen progress. These are the large randomized therapeutics trials, that are often arrogantly defined as evidence-based medicine (as if they were to provide the only real "evidence") and molecular and genetic medicine. Needless to say, both are important new tools in medicine, but neither can make the physiological method obsolete. The risk of the pretended superiority of the new approaches (and the new fashions) is that these claims are unbalancing research activity and its financial support, thus weakening the very basis upon which these new methodologies are founded and have developed.     

Relative importance of physiological precursors for ketogenesis in the nutritional homeostasis of the development of the embryonic chick

This paper investigates the relative importances of specific amino acids, and, in particular, branched chain amino acids and their keto derivatives as possible ketogenic precursors in suspensions of liver cells isolated from chick embryos. Addition of the branched chain keto acids stimulated ketogenesis. The order of potency was α-ketoisocaproic acid >α-ketoisovaleric acid >DL- α-keto-β-methyl-n-valeric acid. The relative order of effectiveness for branched chain keto acids was maintained at all comparable concentrations, and in each case maximum rates were observed with concentrations of 1–2 mM. In contrast to the stimulation of ketogenesis by their keto derivatives, branched chain amino acids were ineffective as precursors for ketogenesis. Of the other amino acids (utilised at concentrations present in chick embryo plasma) only Tyr, Lys, Phe and Arg produced significant increases in ketone body formation above the endogenous rate. At these physiological concentrations, the effectiveness of the amino acids were in the order of Tyr > Lys = Phe > Arg. The interactions between three groups of ketogenic precursor (fatty acids, amino acids and keto amino acids, all at physiological concentrations), produced rates of ketogenesis that were purely additive. These results indicate that high concentrations of hydroxybutyrate and acetoacetate found in plasma of developing chick embryos may arise from hepatic metabolism of several distinct precursors. The relative importance of each category of precursor may vary with the precise developmental status of animals.     

The importance of importance

Failure to distinguish between 'importance' and 'intensity' of competition has hindered our ability to resolve key questions about the role interactions may play in plant communities. Here we examine how appropriate application of metrics of importance and intensity is integral to investigating key theories in plant community ecology and how ignoring this distinction has lead to confusion and possibly spurious conclusions. We re-explore the relationship between competition intensity and importance for individuals across gradients, and apply our review of concepts to published data to help clarify the debate. We demonstrate that competition importance and intensity need not be correlated and show how explicit application of the intensity and importance of competition may reconcile apparently incompatible paradigms.     

The major birch allergen, Bet v 1, shows affinity for a broad spectrum of physiological ligands

Bet v 1 is a 17-kDa protein abundantly present in the pollen of the White birch tree and is the primary cause of birch pollen allergy in humans. Its three-dimensional structure is remarkable in that a solvent-accessible cavity traverses the core of the molecule. The biological function of Bet v 1 is unknown, although it is homologous to a family of pathogenesis-related proteins in plants. In this study we first show that Bet v 1 in the native state is able to bind the fluorescent probe 8-anilino-1-naphthalenesulfonic acid (ANS). ANS binds to Bet v 1 with 1:1 stoichiometry, and NMR data indicate that binding takes place in the cavity. Using an ANS displacement assay, we then identify a range of physiologically relevant ligands, including fatty acids, flavonoids, and cytokinins, which generally bind with low micromolar affinity. The ability of these ligands to displace ANS suggests that they also bind in the cavity, although the exact binding sites seem to vary among different ligands. The cytokinins, for example, seem to bind at a separate site close to ANS, because they increase the fluorescence of the ANS.Bet v 1 complex. Also, the fluorescent sterol dehydroergosterol binds to Bet v 1 as demonstrated by direct titrations. This study provides the first qualitative and quantitative data on the ligand binding properties of this important pollen allergen. Our findings indicate that ligand binding is important for the biological function of Bet v 1.     

Small plants, large plants: the importance of plant size for the physiological ecology of vascular epiphytes

Recently, a number of publications have reported that many physiological properties of vascular epiphytes are a function of plant size. This short review will summarize what is known to date about this phenomenon, describe the possible mechanism and will discuss the consequences for the present understanding of epiphyte biology. Size-related changes are also known from other plant groups and it is argued that close attention should be paid to the size of the organisms under study in order to understand the performance and survival of a species in the field. In the light of these findings, the results of many earlier studies on epiphyte ecophysiology are now difficult to interpret because essential information on the size of the specimens used is missing.