海洋微生物的化学生态学研究进展

近年来,海洋生物的化学生态学研究已成为国际化学生态学研究的亮点之一.该领域的研究不仅为生物进化研究提供了理论依据,也对海洋生态养殖、海洋生态环境保护以及海洋资源的可持续发展具有重要意义.本文从海洋动物、植物、微生物三方面综述了它们与海洋微生物之间的化学生态学关系.海洋动物与微生物的化学生态学作用主要包括抗菌、抗附着、共生3种关系.以发现具有生态学效应的化学信号物质的分子结构为主线,介绍了海洋植物和微生物方面的研究进展,并对该领域的关键性问题和发展方向进行了展望.     

Bio-mining the microbial treasures of the ocean: new natural products

The biological resources of the oceans have been exploited since ancient human history, mainly by catching fish and harvesting algae. Research on natural products with special emphasis on marine animals and also algae during the last decades of the 20th century has revealed the importance of marine organisms as producers of substances useful for the treatment of human diseases. Though a large number of bioactive substances have been identified, some many years ago, only recently the first drugs from the oceans were approved. Quite astonishingly, the immense diversity of microbes in the marine environments and their almost untouched capacity to produce natural products and therefore the importance of microbes for marine biotechnology was realized on a broad basis by the scientific communities only recently. This has strengthened worldwide research activities dealing with the exploration of marine microorganisms for biotechnological applications, which comprise the production of bioactive compounds for pharmaceutical use, as well as the development of other valuable products, such as enzymes, nutraceuticals and cosmetics. While the focus in these fields was mainly on marine bacteria, also marine fungi now receive growing attention. Although culture-dependent studies continue to provide interesting new chemical structures with biological activities at a high rate and represent highly promising approaches for the search of new drugs, exploration and use of genomic and metagenomic resources are considered to further increase this potential. Many efforts are made for the sustainable exploration of marine microbial resources. Large culture collections specifically of marine bacteria and marine fungi are available. Compound libraries of marine natural products, even of highly purified substances, were established. The expectations into the commercial exploitation of marine microbial resources has given rise to numerous institutions worldwide, basic research facilities as well as companies. In Europe, recent activities have initiated a dynamic development in marine biotechnology, though concentrated efforts on marine natural product research are rare. One of these activities is represented by the Kieler Wirkstoff-Zentrum KiWiZ, which was founded in 2005 in Kiel (Germany).     

Marine actinomycete diversity and natural product discovery

Microbial natural products remain an important resource for drug discovery yet the microorganisms inhabiting the worlds oceans have largely been overlooked in this regard. The recent discovery of novel secondary metabolites from taxonomically unique populations of marine actinomycetes suggests that these bacteria add an important new dimension to microbial natural product research. Continued efforts to characterize marine actinomycete diversity and how adaptations to the marine environment affect secondary metabolite production will create a better understanding of the potential utility of these bacteria as a source of useful products for biotechnology.     

海洋生物资源开发研究概况与展望

对各类主要的海洋生物资源开发研究作了简洁概述,从海洋生物体内获取的各种活性物质,除可研究海洋药物外,还可开发海洋生物功能性保健品,海洋生物化工产品等;此外,尚可利用其特异的化学结构作为先导物,设计合成治疗疑难病的创新药物。可以预言,２１世纪将是人类研究、开发、利用海洋生物资源的黄金时代     

海洋生物资源与可持续利用对策研究

海洋生态环境恶化和不合理的开发利用,使我国海洋生物资源严重衰退。开展海洋生物资源学相关基础研究,重点进行海洋环境与生物资源保护,运用海洋生物技术等高新技术,科学、合理地开发利用生物资源,是实现海洋生物资源可持续利用和长久发展的可行策略。着重分析了海洋生物资源状况及其生态环境问题,提出了未来我国海洋生物资源的发展对策。     

Identification of Doris verrucosa mollusc via mitochondrial 16S rDNA

The biological and molecular knowledge of the marine life is of enormous importance in discovering new classes of natural products and in improving management and sustainable utilization of these useful genetic resources. Nonetheless, in this frame, genomic and organelle DNA isolation has been reported to be a limiting step, since downstream applications of molecular biology, such as restriction enzyme digestion, polymerase chain reaction (PCR) and DNA sequencing are hampered by the presence of compounds that are concurrently extracted. In this work we compared different DNA extraction techniques in three marine organisms and tested the downstream applications. One of the species utilized in this work was the Nudibranch Doris verrucosa L., a species with a well-known pharmaceutical interest. The phylogeny of this mollusc has long been discussed on the basis of morphological characters. As a result, D. verrucosa has often been misidentified with other sister species. Mitochondrial 16S rDNA sequence was chosen to better solve this concern and to accurately settle D. verrucosa into the right position. A partial sequence of the mt 16S rDNA of the Nudibranch D. verrucosa was obtained for the first time.The results here presented will provide knowledge useful to a better management and use of marine genetic resources, as well as in resolving taxonomic and identification issues currently open in these marine invertebrates.     

Access to Marine Bioresources: Hitching the Conservation Cart to the Bioprospecting Horse

Bioprospecting involves the collection of biological material for screening for commercially exploitable biologically active compounds or attributes, including genetic information. The authors assess the claim that bioprospecting has the potential to act as a sustainable carrot for biodiversity-rich states to conserve marine environments. They analyze the tensions between the international conventions that address bioprospecting in marine areas: the Biodiversity Convention and the Law of the Sea Convention. In particular, they reject any suggestion that there is a legal presumption in favor of coastal states granting access to marine bioprospectors. They argue that the different approaches taken by the marine scientific research provisions of UNCLOS to fundamental research and research with commercial potential is unrealistic because of the difficulties of drawing the distinction in practice. As a result, the danger is that scientific research will get caught in the hard bargaining increasingly associated with bioprospecting. The authors argue that coastal states will derive greater benefit from research collaborations rather than the distant prospect of winning the product royalty lottery.     

Fishing products from the sea—rational downstream processing of marine bioproducts

In this paper, the implications for process design for various classes of marine bioproducts are reviewed. The potential of a thermodynamic framework to structure and quantify downstream processing alternatives for a wide range of marine bioproducts is demonstrated and the application of the framework is illustrated for two process options.     

基因组挖掘技术在海洋放线菌天然产物研究开发中的应用及展望

利用微生物的基因组信息预测其合成特定天然产物的潜能, 进而进行新化合物分离纯化和结构鉴定的基因组挖掘技术, 已经成为国内外研究的热点, 并在多种细菌和真菌的天然产物发现中得到成功应用。本文综述了基因组挖掘技术的最新进展, 包括生物信息分析和结构预测、基因组指导的天然产物的发现、沉默基因的激活和异源表达技术等, 以及我国学者开发的转录组挖掘技术, 并重点综述了影像质谱技术在基因组挖掘中的应用。目前对海洋放线菌进行基因组挖掘的研究还比较少, 而基因组挖掘技术的发展, 将极大地促进对海洋放线菌天然产物的发现和鉴定。未来除了充分挖掘可培养微生物的基因组, 对未培养微生物宏基因组的挖掘将进一步深入。此外, 除了开发利用基因组中合成天然产物的结构基因和调节基因, 还应该充分开发利用其他不同的遗传元件, 包括不同转录活性和响应不同环境条件和信号的启动子, 以及具有调节作用的RNA等。     

《生物多样性公约》海洋生物多样性议题的 谈判焦点、影响及我国对策

海洋和沿海生物多样性保护和可持续利用等问题是《生物多样性公约》谈判的重要领域。本文梳理了历次缔约方大会的谈判进程, 认为主要焦点议题包括: (1)应对人类活动和全球气候变化对海洋和沿海生物多样性的影响; (2)海洋和沿海生物多样性保护和可持续利用的工具; (3)海洋保护区及具有重要生态或生物学意义的海域。这些议题的讨论将影响包括全球海洋保护区建设在内的海洋生物多样性保护进程, 也将影响全球海洋生物多样性保护国际制度的建设, 以及沿海国家的社会经济。我国应加强履约谈判的技术支持, 加快涉海相关问题研究, 积极参与相关国际谈判, 并大力宣传我国经验。     

Role of DNA barcoding in marine biodiversity assessment and conservation: An update

More than two third area of our planet is covered by oceans and assessment of marine biodiversity is a challenging task. With the increasing global population, there is a tendency to exploit marine resources for food, energy and other requirements. This puts pressure on the fragile marine environment and necessitates sustainable conservation efforts. Marine species identification using traditional taxonomical methods is often burdened with taxonomic controversies. Here we discuss the comparatively new concept of DNA barcoding and its significance in marine perspective. This molecular technique can be useful in the assessment of cryptic species which is widespread in marine environment and linking the different life cycle stages to the adult which is difficult to accomplish in the marine ecosystem. Other advantages of DNA barcoding include authentication and safety assessment of seafood, wildlife forensics, conservation genetics and detection of invasive alien species (IAS). Global DNA barcoding efforts in the marine habitat include MarBOL, CeDAMar, CMarZ, SHARK-BOL, etc. An overview on DNA barcoding of different marine groups ranging from the microbes to mammals is revealed. In conjugation with newer and faster techniques like high-throughput sequencing, DNA barcoding can serve as an effective modern tool in marine biodiversity assessment and conservation.     

Marine molecular biology: an emerging field of biological sciences

An appreciation of the potential applications of molecular biology is of growing importance in many areas of life sciences, including marine biology. During the past two decades, the development of sophisticated molecular technologies and instruments for biomedical research has resulted in significant advances in the biological sciences. However, the value of molecular techniques for addressing problems in marine biology has only recently begun to be cherished. It has been proven that the exploitation of molecular biological techniques will allow difficult research questions about marine organisms and ocean processes to be addressed. Marine molecular biology is a discipline, which strives to define and solve the problems regarding the sustainable exploration of marine life for human health and welfare, through the cooperation between scientists working in marine biology, molecular biology, microbiology and chemistry disciplines. Several success stories of the applications of molecular techniques in the field of marine biology are guiding further research in this area. In this review different molecular techniques are discussed, which have application in marine microbiology, marine invertebrate biology, marine ecology, marine natural products, material sciences, fisheries, conservation and bio-invasion etc. In summary, if marine biologists and molecular biologists continue to work towards strong partnership during the next decade and recognize intellectual and technological advantages and benefits of such partnership, an exciting new frontier of marine molecular biology will emerge in the future.     

Integrating the marine carbon resource mannitol into biomanufacturing

Mannitol is a readily accessible component of seaweed with higher energy content than glucose, making it a promising feedstock for biomanufacturing. Microorganisms have been engineered for converting mannitol into various bioproducts. Microbial strain discovery and synthetic biology approach will advance biomanufacturing using mannitol and other complex components of marine biomass.     

Commercial product exploitation from marine microbial biodiversity: some legal and IP issues

The biodiversity found in the marine environment is remarkable and yet largely unknown compared with the terrestrial one. The associated genetic resource, also wide and unrevealed, has raised a strong interest from the scientific and industrial community. However, despite this growing interest, the discovery of new compounds extracted from marine organisms, more precisely from microorganisms, is ruled by a complex legislation. The access and transfer of genetic resource are ruled by the Convention on Biological Diversity. One of the three core objectives of this convention is to ensure the fair and equitable sharing of benefits generated by the use of genetic resources and to split these benefits between the different stakeholders. From the discovery of a microorganism to the commercialization of a product, three main stakeholders are involved: providers of microorganisms, e.g. academic institutes, the scientists who will perform R&D on biodiversity, and the industrial companies which will commercialize the final product arising from the R&D results. This article describes how difficult and complex it might be to ensure a fair distribution of benefits of this research between the parties.     

Biodiversity and potentials of marine-derived microorganisms

The marine environment is a prolific resource for the isolation of less exploited microorganisms. As a matter of fact, in the sea, untapped habitats exist with unique characteristics. In addition, the potential contribution of marine sources to the discovery of new bioactive molecules was recently recognized. Biosearch Italia possesses a collection of about 40 000 microorganisms, isolated from different ecological niches. In the search of new bioactive entities, investigations were expanded to marine habitats including marine sediments and organisms. More then 800 microorganisms have been isolated. About half belong to fungal genera, the others being actinomycetes. The frequency of antibiotic activities produced by these marine strains has been determined. Initial data are encouraging: marine isolates produce antibiotic activities with frequencies comparable to terrestrial ones. These activities probably represent a mixture of novel metabolites and known products previously discovered from terrestrial isolates. Further investigations are ongoing to assess the novelty of these observed microbiological activities.     

Ecopharmacognosy and the responsibilities of natural product research to sustainability

The recently developed term “ecopharmacognosy” is defined as the study of sustainable, biologically active, natural resources. As a philosophical approach, it provides a conceptual framework for developing new strategies and new scientific perspectives which may improve future global food and health care product accessibility and assure beneficial outcomes. In this brief article some facets of how the precepts of ecopharmacognosy may apply in developing new medicinal products may be developed, based on sustainability and the use of integrated technologies.Although from a medicinal agent perspective, plants remain a primary source of global health care, these resources are not being pursued by major pharmaceutical companies as sources of new agents, and essentially all tropical diseases, as well as most microbially based diseases, remain outside the scope of their drug discovery programs. Countries and regions therefore must address their own drug discovery needs for “local” and some global diseases. In addition, the cost of drug importation is so high that development of local resources, i.e. traditional medicines, may be the only rational alternative approach. At the same time, network pharmacology is exploring the many diverse effects of both individual and complex natural products at the gene level, and this is offering new opportunities to rethink and restructure the core, long-standing, Western, magic bullet philosophy to drug discovery. Other ecopharmacognosy changes underway include the computer-aided design of natural product derivatives, based on molecular docking, which is providing targetable enzyme substrates, and remote sensing technologies which can assess natural materials non-invasively for critical constituents as a part of rethinking quality control strategies in the field. Furthermore, there are the hyphenated chromatographic and spectroscopic procedures to quantitatively analyze single and multicomponent plant mixtures for bioactive markers to enhance quality control and, thereby, patient care. The relationship of these evolving approaches will serve as practical examples to the philosophies of ecopharmacognosy. In summary, with respect to health care, ecopharmacognosy poses the long-term practical question for drugs, “How Green is Your Medicine?”     

Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges

Natural products isolated from sponges are an important source of new biologically active compounds. However, the development of these compounds into drugs has been held back by the difficulties in achieving a sustainable supply of these often-complex molecules for pre-clinical and clinical development. Increasing evidence implicates microbial symbionts as the source of many of these biologically active compounds, but the vast majority of the sponge microbial community remain uncultured. Metagenomics offers a biotechnological solution to this supply problem. Metagenomes of sponge microbial communities have been shown to contain genes and gene clusters typical for the biosynthesis of biologically active natural products. Heterologous expression approaches have also led to the isolation of secondary metabolism gene clusters from uncultured microbial symbionts of marine invertebrates and from soil metagenomic libraries. Combining a metagenomic approach with heterologous expression holds much promise for the sustainable exploitation of the chemical diversity present in the sponge microbial community.     

海洋放线菌Marinactinospora thermotolerans的研究进展

海洋放线菌以产生多种活性天然产物而著称,其中部分结构新颖的活性化合物具有发展成为新药的巨大潜力,引起国内外相关领域研究人员的极大关注。同时,也促进了我国海洋放线菌研究工作的全面展开。本文系统综述了海洋放线菌新属种Marinactinospora thermotolerans的分类鉴定、新颖的次级代谢产物的发现及其生物合成机制以及该菌株的全基因组生物信息学分析等方面的最新研究进展,以期能为其他海洋放线菌新属种的分类鉴定、活性次级代谢产物的发现和生物合成机制研究提供借鉴作用。     

中国沿海省区海洋绿色发展测度及影响机理

海洋绿色发展是海洋高质量发展的重要内容,坚持生态优先和资源可持续的绿色发展模式对于海洋可持续的意义重大。在梳理了海洋绿色发展概念与内涵基础上,以沿海11省市为研究对象,基于2006-2017年沿海各省市的面板数据,建立海洋绿色发展评价指标体系,通过可变模糊识别模型对海洋绿色发展水平进行测度,并运用Arcgis软件和马尔可夫空间模型对其进行时空演变分析,最后运用面板数据模型进行影响因素分析。结果表明：①2006-2017年我国海洋绿色发展水平一直保持增长趋势,总体提高了19.6%,但整体仍呈中等水平,且地区差异明显。在空间分布上,空间集聚特征依然明显,东南沿海地区总体海洋绿色发展水平相对较高,西南和东北部分地区海洋绿色发展水平相对较低。②从时空演化特征来看,上海、天津、山东的海洋绿色发展水平相对较高,河北、广西的海洋绿色发展水平相对较低。区域背景对海洋绿色发展类型转移具有显著影响,高水平区域背景对海洋绿色发展水平增长具有辐射、促进作用,而低水平区域背景对增长具有制约、减缓作用。③从外部因素来看,政府调控、陆域经济水平和开放程度对海洋绿色发展有正向显著影响,环境治理有负向显著影响;从内部因素来看,海洋产业结构、海洋管理和海洋资源利用都有正向显著影响。根据总结以上结论,针对不同地区的海洋绿色发展情况提出不同的发展途径与对策,为海洋绿色发展提供科学的参考依据。     

New woody and ambery notes from cedarwood and turpentine oil

The development of a new product in the chemical industry is still driven by needs like technical properties, price/performance ratio, biodegradability, or product safety. However, in terms of improving more and more on ecological criteria, summarized under such catchphrases as sustainable development or green chemistry, another important aspect is to use renewable resources as starting materials. This is not significantly new in fragrance chemistry, and there are a lot of raw materials in the perfume oils that are derived from molecules of renewable resources. Two commonly used materials are: longifolene (from turpentine oil) and cedrene (from cedarwood oil). These compounds are very suitable for the synthesis of woody and ambery notes, and even though it seemed that all possibilities were exhausted, it is actually still feasible to discover new molecules with excellent olfactory properties such as Ambrocenide (50a), which is available in three steps from alpha-cedrene. Some of these molecules will be treated in this review, both with respect to synthesis as well as structural and sensory aspects.