多能硫杆菌基因文库的构建以及Rubis CO基因的筛选

以pUC9质粒DNA作为载体,用PstⅠ酶切、碱性磷酸酯酶处理后,与PstⅠ部分酶切的多能硫杆菌染色体DNA3－10kbDNA片段连接,转化大肠杆菌JM83,在MacConkey培养基上筛选重组于,所得的重组子为6.5×10³,达到建库要求的理论值。进一步用光合细菌Rhodobactersphaeroides类型Ⅱ磷酸核酮糖羧化酶／加氧酶基因（rbcL－rbcS）为探针,从该库中筛选到了含有多能硫杆菌的1,5－二磷酸核酮糖羧化酶／加氧酶（RubisCO）基因片段的重组子     

多能硫杆菌RubisCO基因鉴定以及在大肠杆菌中的表达

多能硫杆菌(Thiobacillus versutus)是兼性化能自养细菌,在生理学和分类学上具有重要的地位,也是研究硫杆菌生理、生化、遗传学的理想材料。该菌通过卡尔文循环固定CO_2,其关键酶是1,5-二磷酸核酮糖羧化酶/加氧酶(简称RubisCO)。我们从多能硫杆菌中分离得到的RubisCO基因片段能够在大肠杆菌细胞中表达,说明自养细菌与异养细菌在基因表达方面是相似的。     

多能硫杆菌RuhisCO墓因在大肠杆菌中表达产物分析

通过对多能硫杆菌RubiSCO的基因表达分析表明该基因能够在pBR322的P1启动子、pUC19的lac启动子以及pKK223-3的tac启动子的启动下,在大肠杆菌中表达,RubisCO基因片段在pUC19和pKK223-3载体上的表达活性较高。进一步对RubisCO基因表达产物进行了非变性聚丙烯酰胺凝胶电泳,检测到了RubisCO蛋白质带。     

嗜酸氧化亚铁硫杆菌基因组学研究进展

嗜酸氧化亚铁硫杆菌(Acidithiobacillus ferrooxidan,A.ferrooxidans)广泛存在于酸性矿物废水中,与生物冶金和环境净化紧密相关。不同来源嗜酸氧化亚铁硫杆菌全基因组的测序,为我们利用比较基因组学和功能基因组学的方法去洞察嗜酸氧化亚铁硫杆菌功能基因,提供了坚实的研究基础和丰富的科研信息。简述了嗜酸氧化亚铁硫杆菌基因组学的基本特征;从比较基因组学和功能基因组学发现了嗜酸氧化亚铁硫杆菌菌株基因组水平的差异;通过生物信息学概述了该菌的铁和硫代谢机制,并从细菌的功能基因组学对其在生物冶金与环境治理等应用进行了展望。     

浸矿细菌的遗传工程

硫杆菌属(Thiobacillus)的一些种,氧化硫硫杆菌(T.thiooxidans)和氧化亚铁硫杆菌(T.ferrooxidans),广泛分布于硫化矿床的酸性矿水中,最适生长pH为2.0—2.5,是一类革兰氏阴性专性自养细菌。这类细菌广泛应用于有用金属的浸出,特别适合于从低品位的     

污泥中重金属的生物淋滤

生物淋滤法(Bioleaching)是指利用自然界中一些微生物(硫细菌)的直接作用或其代谢产物的间接作用,产生氧化、还原、络合、吸附或溶解反应,将固相中某些不溶性成分(如重金属、硫及其他金属)分离浸提出来的技术.在生物淋滤中,嗜酸性氧化亚铁硫杆菌(Acidithiobacillus ferrooxidans,A.f)和嗜酸性氧化硫硫杆菌(Acidithiobacillus thiooxidans,A.f)被用作有效的淋滤载体[1].这种嗜酸性的化能自养型细菌以大气中的CO2为碳源,以无机物铁或硫为能源来维持生长,不需要提供外来的碳源和电子供体.另外,由于pH值很低,抑制了其他细菌的生长,所以在实际的操作过程中不需要严格的无菌条件.氧化亚铁硫杆菌和氧化硫硫杆菌去除重金属适宜于污水处理厂的开放系统,采用土著嗜酸性氧化亚铁硫杆菌(A.f)和氧化硫硫杆菌(A.f)进行重金属去除.也就是说,处理什么地方的污泥,就在什么地方分离A.f和A.t,这样分离的微生物在生物淋滤过程中能发挥较好的作用.这也是微生物在自然界生长繁殖的特点之一. 本期介绍了王聪、宋存江等[2]从剩余活性污泥中分离得到两株土著硫杆菌,对两株菌进行了分类鉴定,确定二者分别为嗜酸性氧化亚铁硫杆菌杆(Acidithiobacillus ferrooxidans,A.f)和嗜酸性氧化硫硫杆菌(Acidithiobacillus thiooxidans,A.t),将二者的单菌和混合菌分别接种于剩余活性污泥中,进行了为期9 d的生物淋滤,对淋滤过程中的pH变化、氧化还原电位(ORP)以及重金属含量进行了检测.结果表明,生物淋滤9 d的混合菌对于As、Cr、Cu、Ni和Zn的去除效果最好,去除率分别达到了96.09%、93.47%、98.32%、97.88%和98.60%.混合菌生物淋滤对于Cd和Pb的去除率在第6天之后迅速下降,但是A.t单菌淋滤保持较高的去除率,此结果为进一步的应用打下了良好的基础.     

铜蓝精矿的生物浸出

采用两种嗜酸硫杆菌(嗜酸氧化亚铁硫杆菌和喜温硫杆菌)对铜蓝进行生物浸出,实验在有或没有4 g/L硫酸亚铁pH 2．0、150转/分、35℃的三角瓶中进行。实验结果表明:用两种菌混合浸出的铜几乎等于嗜酸氧化亚铁硫杆菌单独浸出的铜;另外,亚铁的加入能提高铜的浸出。     

氧化亚铁硫杆菌中磁小体形成相关基因在不同亚铁浓度刺激下的差异表达

氧化亚铁硫杆菌(Acidithiobacillus ferrooxidans)的生物控制矿化作用可以使其在胞内形成黑色电子致密颗粒—磁小体。本研究利用生物信息学方法对氧化亚铁硫杆菌标准菌株ATCC 23270的全基因组进行分析, 并通过Real-time PCR技术研究氧化亚铁硫杆菌中与磁小体形成相关的mpsA、magA、thy和mamB四个基因在不同亚铁浓度刺激下的差异表达, 结果发现它们在转录层面的表达量受亚铁浓度的影响, 当亚铁浓度达到150~200 mmol/L范围内达到最高表达,这对进一步深入研究氧化亚铁硫杆菌中磁小体的形成机理有积极的意义。     

Quantification of bacterial RubisCO genes in soils by cbbL targeted real-time PCR

Soils harbor a high diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) large subunit coding genes (cbbL). Real-time PCR was used to quantify this gene in differently managed agricultural soils and soil microhabitats. We developed primers and a TaqMan probe that target the "red-like" RubisCO gene cbbL. Primers and probe were developed based on cbbL sequences of selected bacterial pure cultures and of environmental clones. The amount of cbbL copies in the investigated soils were detected in the range of 6.8x10(6) to 3.4x10(7) "red-like" cbbL copies/g soil. The cbbL genes could be located entirely in the clay and silt fraction, while the coarse sand fractions revealed no detectable level of bacterial RubisCO genes. These results indicate that bacteria with RubisCO coding genes are numerous and widespread in soils, however the functional implication of this gene in soils is not yet clear.     

Monitoring of bacteria in acid mine environments by reverse sample genome probing

A variety of microorganisms can exist in acid mine drainage (AMD) environments, although their contribution to AMD problems is unclear. Environmental strains of Thiobacillus ferrooxidans and Thiobacillus acidophilus were purified by repeated plating and single-colony isolation on iron salts and tetrathionate media, respectively. Thiobacillus thiooxidans was enriched on sulfur-containing media. For the isolation of Leptospirillum ferrooxidans, iron salts and pyrite media were inoculated with environmental samples. However, L. ferrooxidans was never recovered on solid media. Denatured chromosomal DNAs from type and (or) isolated strains of T. ferrooxidans, T. acidophilus, T. thiooxidans, and L. ferrooxidans were spotted on a master filter for their detection in a variety of samples by reverse sample genome probing (RSGP). Analysis of enrichments of environmental samples by RSGP indicated that ferrous sulfate medium enriched T. ferrooxidans strains, whereas all thiobacilli grew in sulfur medium, T. thiooxidans strains being dominant. Enrichment in glucose medium followed by transfer to tetrathionate medium resulted in the selection of T. acidophilus strains. DNA was also extracted directly (without enrichment) from cells recovered from AMD water or sediments, and was analyzed by RSGP to describe the communities present. Strains showing homology with T. ferrooxidans and T. acidophilus were found to be major community components. Strains showing homology with T. thiooxidans were a minor community component, whereas strains showing homology with L. ferrooxidans were not detected.     

Cloning and expression of Thiobacillus versutus aspartate-semialdehyde dehydrogenase gene in Escherichia coli

The Thiobacillus versutus asd gene coding for aspartate-semialdehyde dehydrogenase was cloned in Escherichia coli cells using pBR322 as a vector. The gene was expressed independently of its orientation, suggesting that E. coli RNA polymerase recognized T. versutus promoter sequence. The T. versutus DNA coded protein, of the molecular weight 44,000, was identified by the analysis of the proteins produced by minicells.     

Intergeneric conjugation in Thiobacillus versutus.

In plate matings with Escherichia coli HB101/pUW965::Tn5 (KmR) Thiobacillus versutus reacted as an efficient recipient, producing 10(-2) to 10(-3) kanamycin resistant (KmR) T. versutus exconjugants per donor cell. Analysis of agarose gels of plasmid DNA extracted from the exconjugants confirmed that the suicide vector pUW964 did not persist in the recipient, implying that the kanamycin resistance of the exconjugants is based on effective transposition of Tn5 in T. versutus as well as function of the E. coli kanamycin gene. Transfer was equally efficient when a nalidixate-resistant T. versutus mutant was used as recipient. Hybridization evidence for the presence of Tn5 was consistently negative. The significance of this anomalous result is discussed.     

Five types of polyamine distribution patterns in thiobacilli

Polyamines in 12 species (19 strains) of sulfuroxidizing eubacteria belonging to Thiobacillus were analyzed. Their polyamine distribution patterns were separated into 5 types. T. neapolitanus contained putrescine alone (first type), T. intermedius, T. perometabolis, T. thioparus and a strain of T. denitrificans putrescine and 2-hydroxyputrescine (second type), T. acidophilus, T. organoparus, T. versutus, T. tepidarius, T. thiooxidans and T. ferrooxidans putrescine and spermidine (third type), T. novellus putrescine and homospermidine (fourth type), and a strain of T. denitrificans diaminopropane, putrescine and homospermidine (fifth type). Thus, thiobacilli could be rearranged into different taxonomic positions within Proteobacteria on the basis of polyamine distribution patterns.     

Intergeneric conjugation in Thiobacillus versutus

D.L. READ, L.M. TOTH AND K. McCANN. 1992. In plate matings with Escherichia coli HB101/pUW965: Tn5 (Km^R) Thiobacillus versutus reacted as an efficient recipient, producing 10^-2 to 10^-3 kanamycin resistant (Km^R) T. versutus exconjugants per donor cell. Analysis of agarose gels of plasmid DNA extracted from the exconjugants confirmed that the suicide vector pUW964 did not persist in the recipient, implying that the kanamycin resistance of the exconjugants is based on effective transposition of Tn5 in T. versutus as well as function of the E. coli kanamycin gene. Transfer was equally efficient when a nalidixate-resistant T. versutus mutant was used as recipient. Hybridization evidence for the presence of Tn5 was consistently negative. The significance of this anomalous result is discussed.     

Rapid isolation of genes from bacterial lambda libraries by direct polymerase chain reaction screening

Abstract Ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO) was purified from an obligately autotrophic hydrogen-oxidizing bacterium, Hydrogenovibrio marinus MH-110. The protein has a M _r value of approximately 110 000, and is composed of two identical subunits of 55 000. To our knowledge, the existence of L₂-form RubisCO in a chemolithoautotrophic bacterium is first reported in this paper. The N-terminal amino acid sequence determination of the purified enzyme showed high homology with those of the L₂-form RubisCO of Rhodospirillum rubrum and the L _x -form RubisCO from Rhodobacter sphaeroides .     

Bacterial leaching of a sulfide ore by Thiobacillus ferrooxidans and Thiobacillus thiooxidans: I. Shake flask studies

Bacterial leaching of a sulfide ore containing pyrite, chalcopyrite, and sphalerite was studied in shake flask experiments using Thiobacillus ferrooxidans and Thiobacillus thiooxidans strains isolated from mine sites. The Fe(2+)grown T. ferrooxidans isolates solubilized sphalerite preferentially over chalcopyrite leaching 7-10% Cu, 68-76% Zn, and 10-22% Fe from the ore in 18 days. The sulfur grown T. thiooxidans isolates leached Zn much more slowly and very little Fe, with a Cu-Zn extraction ratio twice the value obtained with T. ferrooxidans. The ore adapted T. ferrooxidans started solubilizing Cu and Zn without a lag period. The ore-adapted T. thiooxidans extracted Cu as well as T. ferrooxidans, but the extraction of Zn or Fe was still much slower in the low-phosphate medium, while in the high-phosphate medium it approached the value obtained with T. ferrooxidans. A high Cu-Zn extraction ratio of 0.34 was obtained with T. thiooxidans in the low phosphate medium. In the mixed-culture experiments with T. ferrooxidans and T. thiooxidans, the culture behaved as T. thiooxidans in the low-phosphate medium with a higher Cu-Zn extraction ratio and as T. ferrooxidans in the high-phosphate medium with a lower Cu-Zn extraction ratio. It is concluded that T. ferrooxidans and T. thiooxidans solubilize sulfide minerals by different mechanisms.