Virion orientation in cubic crystals of the human common cold virus HRV14

A new cubic crystal form (a = 445.1 A) of space group P23 is reported for human rhinovirus R14. There are four particles per unit cell, each situated on a crystallographic 3-fold axis. The orientation of these particles has been determined with a rotation function and their approximate positions have been derived from a Patterson map. The crystals diffract to at least 2.8 A resolution. Limitations to the possible surface features of the virus are set by a comparison of the cubic and orthorhombic crystal forms.     

Hyaluronic acid: The role of divalent cations in conformation and packing

X-ray diffraction data typical of helical structures have been obtained from strontium and calcium salts of hyaluronic acid. The data indicate three disaccharides in each helix repeat with an average pitch of 2.84 nm and therefore suggest a conformational similarity with other highly extended hyaluronate polymorphs, the packing of which in crystalline arrays is influenced both by the particular cation involved and by the extent of hydration.Intensity data from a high humidity calcium salt were used in a detailed structure refinement. Six chains were found to pack in a trigonal unit cell with symmetry P3₂12 and dimensions a = b = 2.093 nm, c = 2.830 nm. The polyanion conformation is stabilized by O(3)_AO(5)_B and O(4)_BO(5)_A hydrogen bonds across the (1 → 4) and (1 → 3) linkages, respectively. Both crystallographic and steric considerations imply a non-equivalence of the three disaccharide residues in each helix turn.Adjacent antiparallel chains are tied together through COO^?Ca²⁺^?OOC bridges while the co-ordination of each Ca²⁺ ion is completed by three pairs of dyadically related water molecules. These water molecules are also extensively hydrogen-bonded to the polyanions. Sensitivity of the a and b unit cell dimensions to the ambient relative humidity further supports the conclusion that water of hydration surrounds the polyanions.Consideration of isolation and purification procedures together with elemental analysis for a large number of hyaluronate samples demonstrates the importance of divalent cations, even in small quantities, in inducing extended 3-fold helical conformations. If interactions between chain segments have a role in determining the properties of hyaluronate-containing tissues and fluids then it is likely, because of the abundant calcium which is also present, that any polymer secondary structures usually will be similar to the conformer described in this study.     

Chitin and chitinase: A kinetic model

A model is described for the action of insect molting chitinase on chitin microfibrils in cuticle. The model reconciles the disparate structures proposed for chitin in the literature. It also accounts for the kinetic characteristics of molting fluid chitinase insofar as known from in vitro studies, viz. positive co-operativity of possibly three catalytic sites, complexity, and processivity. These have hitherto been difficult to account for in vivo, given the arrangement of chitin in anhydrous microfibrils in arthropod cuticle.     

Stimulation of CDP-choline biosynthesis by enantiomeric lysophosphatidylcholines in rat intestinal mucosa

The phosphorylcholine cytidyltransferase activity of the cytosol fractions of rat intestinal crypt and villus cells was observed to be stimulated by addition of 3-sn-lysophosphatidylcholine. A 15- to 20-fold increase in activity was seen following a prior removal of phospholipids with acetone and butanol. 3-sn-Lysophosphatidylcholines of C¹⁶ and C¹⁸ carbon fatty acids were three to four times more effective than those with fatty chains of shorter length. The 3-sn-phosphatidyl and 3-sn-lysophosphatidyl ethanolamine, inositol, and serine were ineffective. 3-sn-Lysophosphatidic acid and 3-sn-glycerophosphorylcholine did not stimulate the transferase activity indicating that both fatty acyl and phosphorylcholine moieties of the 3-sn-lysophosphatidylcholine molecule were required for the observed effect. Addition of the enantiomeric 1-sn-lysophosphatidylcholine had an effect comparable to that of 3-sn-lysophosphatidylcholine on the phosphorylcholine cytidyltransferase activity when assayed in rat intestinal mucosa and in pigeon liver. It is suggested that the stimulatory effect of lysophosphatidylcholine may be related to a specific detergent property dependent upon the peculiar balance of hydrophilic and hydrophobic components in the molecule.     

Adoptive protection of the Mycobacterium tuberculosis-infected lung. Dissociation between cells that passively transfer protective immunity and those that transfer delayed-type hypersensitivity to tuberculin

Adoptive transfer of protective immunity to an aerogenic infection with the facultative intracellular bacterium Mycobacterium tuberculosis was mediated by a population of T cells acquired in the spleen of donor mice at the height of the primary cell-mediated immune response to an immunizing infection with M. bovis bacillus Calmette-Guerin. Successful adoptive immunotherapy was ablated by prior exposure of immune donor cells to ionizing radiation or by treatment of these cells with antibody raised against the Ly-2 marker. In contrast, however, the capacity of immune donor cells to passively transfer delayed-type hypersensitivity (DTH) responses to tuberculin was unaffected by prior treatment with antibody to Ly-2, but was completely ablated by treatment by antibody to Ly-1. These results indicate, that DTH and protective anti-tuberculous immunity are dissociable phenomena, mediated by separate populations of T lymphocytes.     

A microassay for the peptidase activity of enzymes utilizing ribonuclease S peptide as a substrate

A microassay for the peptidase activity of proteins obtained in minute amounts was devised. The method uses ribonuclease S peptide as a substrate. The substrate when cleaved is unable to reconstitute an active ribonuclease S complex. Therefore the loss in activity of the reconstituted complex is a measure of the peptidase activity. The method was previously tested with known peptidases such as clastase (9), chymotrypsin (8), and trypsin. In this work the peptidase activity of a protein related to a sperm-decapitating factor (1) is evidenced.     

A kinetic investigation of the binding of azo dyes to cyclo-maltohexaose

The equilibrium constants and rate constants for the formation of azo dye-cyclomaltohexaose complexes have been determined at 26.6° and an ionic strength of 0.15. The effect of changing the substituents on the dyes is explained in terms of the sizes (steric factors) of the substituents and the charges on the substituents     

Purification and characterization of ovine pancreatic alpha - amylase.

Ovine pancreatic amylase has been purified from pancreas homogenate by ammonium sulfate, acetone precipitation, DEAE-cellulose chromatography and finally by specific adsorption on polydextran gel. The enzyme is homogeneous and found as a single form as shown by disc electrophoresis, SDS gel electrophoresis, electrofocusing and ultracentrifugation. Its specific activity is similar to that of porcine amylase. The amino acid composition indicates a high content in aromatic and acidic amino acids as for the porcine enzyme; however the methionine and half cystine content differ widely. The N-terminal end is blocked. Also ovine amylase is glycosylated. The molecular weight (56,000-58,000) is slightly higher than for the porcine enzyme. The isoelectric point is acidic (pI = 3.2).     

Low-temperature 1H-NMR evidence of the folding of isolated ribonuclease S-peptide

The temperature (-7 degrees C to 45 degrees C, pH 5.4) and pH (0 degrees C) dependence of 1H chemical shifts of ribonuclease S-peptide (5 mM, 1 M NaCl) has been measured at 360 MHz. The observed variations evidence the formation of a partial helical structure, involving the fragment Thr-3-Met-13. Two salt-bridges stabilize the helix: those formed by Glu-9- ...His-12+ and Glu-2- ...Arg-10+. The structural features deduced from the 1H-NMR at low temperature for the isolated S-peptide are compatible with the structure shown by the same molecule in the ribonuclease S crystal.     

Changes of Raman scattering in the CU-stretching region during thermally induced unfolding of ribonuclease

Thermally induced unfolding of ribonuclease at low pH produces a large increase of Raman scattering intensity at ～ 2930cm^?1 (CH₃-stretching region). Comparisons of the CH₃-stretching spectra of various model compounds in the presence or absence of H₂O (²H₂O), indicate that the changes observed with ribonuclease arise from the insertion of previously buried, aliphatic amino acid residues into water.     

A new source of carbon oxides in biochemical systems. Implications regarding dioxetane intermediates

The peroxidase catalyzed aerobic oxidation of aromatic pyruvates produces the aromatic aldehyde, oxalate, CO and CO₂ and a weak light emission. This indicates the preliminary formation of a peroxy anion which can cyclizes to a four-membered ring dioxetane and to a five membered ring α-keto-β-peroxylactone intermediates.The possible importance of this new source of carbon oxides in biological systems is pointed out. The results considerably strengthen the view that a dioxetane is formed in side chain of the plant hormone indoleacetic acid during the oxidation catalyzed by peroxidase.     

X-ray absorption studies of intermediates in peroxidase activity

The structures of the enzyme-substrate compounds of peroxidases and catalase determined by X-ray absorption spectroscopy are presented. The valence state of the iron in Compounds I and II is determined from the edge to be higher than Fe+3. A short Fe-Ne (proximal histidine) distance is observed in all forms except Compound II, forcing the Fe-Np average distance to be long, a result which differentiates the peroxidases from the oxygen transport hemoproteins and plays a pivotal role in the mechanism. A correlation is shown between the ratio of peaks in the low k (ligand field indicator ratio) region, the Fe-Np (heme pyrrole nitrogen) average distance, and the magnetic susceptibility, which provides a sensitive indicator of spin state. The mechanism of H2O2 reduction is shown by analysis of the structural changes observed in the intermediates. Possible relationship of these compounds to that of the peroxidatic form of cytochrome oxidase is suggested by these results.     

Acetyl-coenzyme A carboxylase from the developing endosperm of Ricinus communis: II. A two-site kinetic mechanism

The reaction kinetics of acetyl-coenzyme A carboxylase purified from developing castor oil seeds have been examined. On the basis of the substrate interaction and product inhibition results, a hybrid ping-pong mechanism is proposed. This type of mechanism demands that the active site of the enzyme be separated into two functionally distinct catalytic sites. The carboxybiotin intermediate formed at one site by the hydrolysis of ATP swings to the second site where acetyl-CoA is carboxylated to form malonyl-CoA. This hybrid rapid-equilibrium random bi bi uni uni ping-pong mechanism which includes the formation of three abortive complexes, E · HCO₃^? · ADP, E · HCO₃^? · P_i and E · P_i · P_i, is analogous to the hybrid ping-pong mechanism previously described for methylmalonyl-CoA transcarboxylase (D. B. Northrop (1969) J. Biol. Chem., 244, 5808) and pyruvate carboxylase (R. E. Barden, C-H. Fung, M. F. Utter, and M. C. Scrutton (1972) J. Biol. Chem., 247, 1323).     

Nutritional effect of possible intermediates of phytosterol dealkylation in the silkworm, Bombyx mori

Several possible substrates and intermediates of phytosterol dealkylation were tested for their ability to support growth and development in the silkworm, $\text{Bombyx mori}$. These compounds were classified into “effective” (fully substitutive for cholesterol), “partially effective” (partially supporting growth) and “ineffective” These results are discussed in relation to the mechanism of phytosterol dealkylation in insects.