Nitrogen and phosphorus availability at early stages of soil development in the Damma glacier forefield,Switzerland; implications for establishment of N2-fixing plants

Plant and Soil - Di-nitrogen (N2)-fixing plants are absent in the pioneer stages of glacial forefields in the European Alps despite low amounts of nitrogen (N) in the soil. We aimed to evaluate...     

Pioneering fungi from the Damma glacier forefield in the Swiss Alps can promote granite weathering

Fungi were isolated from fine granitic sediments, which were collected at 15 sampling points within a 20 m × 40 m area in front of the Damma glacier in the central Swiss Alps. From the 45 fungal isolates grown on nutrient-rich agar media at 4 °C, 24 isolates were selected for partial sequencing and identification based on the small subunit ribosomal DNA. Sequencing data revealed that the isolated fungi represented three fungal phyla and 15 species. The weathering potential of 10 of the 15 fungal species was tested with dissolution experiments using powdered granite material (<63 μm). The results showed that the zygomyceteous species Mucor hiemalis, Umbelopsis isabellina and Mortierella alpina dissolved the granite powder most efficiently due to the release of a variety of organic acids, mainly citrate, malate and oxalate. In particular, the high concentrations of Ca, Fe, Mg and Mn in the solutions clustered well with the high amounts of exuded citrate. This is the first report on fungi that were isolated from a non-vegetated glacier forefield in which the fungi's capabilities to dissolve granite minerals were examined.     

Variations in soil culturable bacteria communities and biochemical characteristics in the Dongkemadi glacier forefield along a chronosequence

The variations in the soil culturable bacterial communities and biochemical parameters of early successional soils from a receding glacier in the Tanggula Mountain were investigated. We examined low organic carbon (C) and nitrogen (N) contents and enzymatic activity, correlated with fewer bacterial groups and numbers in the glacier forefield soils. The soil pH values decreased, but the soil water content, organic C and total N significantly increased, along the chronosequence. The soil C/N ratio decreased in the early development soils and increased in the late development soils and it did not correlate with the soil age since deglaciation. The activities of soil urease, sucrase, protease, polyphenol oxidase, catalase, and dehydrogenase increased along the chronosequence. The numbers of culturable bacteria in the soils increased as cultured at 25°C while decreased at 4°C from younger soils to older soils. Total numbers of culturable bacteria in the soils cultured at 25°C were significantly positively correlated to the soil total N, organic C, and soil water content, as well as the activities of soil urease, sucrase, dehydrogenase, catalase, and polyphenol oxidase. We have obtained 224 isolates from the glacier forefield soils. The isolates were clustered into 28 groups by amplified ribosomal DNA restriction analysis (ARDRA). Among them, 27 groups and 25 groups were obtained from the soils at 25°C and at 4°C incubation temperatures, respectively. These groups are affiliated with 18 genera that belong to six taxa, viz, Actinobacteria, Gammaproteobacteria, Bacteroidetes, Firmicutes, Alphaproteobacteria, and Betaproteobacteria. The dominant taxa were Actinobacteria, Gammaproteobacteria, and Bacteroidetes in all the samples. The abundance and the diversity of the genera isolated at 25°C incubation temperature were greater than that at 4°C.     

Abundances and potential activities of nitrogen cycling microbial communities along a chronosequence of a glacier forefield

Glacier forefields are ideal ecosystems to study the development of nutrient cycles as well as single turnover processes during soil development. In this study, we examined the ecology of the microbial nitrogen (N) cycle in bulk soil samples from a chronosequence of the Damma glacier, Switzerland. Major processes of the N cycle were reconstructed on the genetic as well as the potential enzyme activity level at sites of the chronosequence that have been ice-free for 10, 50, 70, 120 and 2000 years. In our study, we focused on N fixation, mineralization (chitinolysis and proteolysis), nitrification and denitrification. Our results suggest that mineralization, mainly the decomposition of deposited organic material, was the main driver for N turnover in initial soils, that is, ice-free for 10 years. Transient soils being ice-free for 50 and 70 years were characterized by a high abundance of N fixing microorganisms. In developed soils, ice-free for 120 and 2000 years, significant rates of nitrification and denitrification were measured. Surprisingly, copy numbers of the respective functional genes encoding the corresponding enzymes were already high in the initial phase of soil development. This clearly indicates that the genetic potential is not the driver for certain functional traits in the initial phase of soil formation but rather a well-balanced expression of the respective genes coding for selected functions.     

Dissolved organic carbon concentrations and fluxes along the Moisie River, Quebec

SUMMARY. 1. The main stream and tributaries of a 145 km reach of the Moisie River, Quebec, were examined for temperature, conductivity, pH, dissolved organic carbon (DOC),%DOC>100,000 nominal molecular weight (NMW), optical density (OD₃₅₀), and the ratio of OD₄₀₀ to OD₆₀₀ (E4:E6).
2. Dissolved organic carbon concentrations correlated closely with OD₃₅₀ ( r ²=0.92, P <0.001). However,%DOC>100,000 NMW did not correlate with the E4:E6 ratio.
3. Except for a slight increase in%DOC> 100,000 NMW ( r ²=0.37, P <0.05), no change in any characteristic occurred down the length of the Moisie River, despite consistently higher levels of DOC in the tributaries.
4. Results suggest that high concentrations of DOC in tributary waters are rapidly removed within the main river channel. These results are discussed in terms of both biotic and abiotic models of in-strcam processing.     

可溶性有机碳在土壤剖面淋溶过程中的分馏

选取中亚热带两种不同类型土壤为研究对象,采集0～10、10～20、20 ～ 40、40～60、60～80、80～ 100 cm土层土壤样品,提取米槠新近凋落物的可溶性有机碳(DOC)溶液为初始DOC,研究其在土样中淋溶时的分馏现象和截留特征.结果表明:初始DOC在土柱中淋溶时,其浓度随深度增加呈逐层下降的趋势,而且化学结构更为简单,被土壤截留的DOC中主要是疏水性组分,但随着土层深度增加,亲水性DOC的截留量呈上升趋势;红外光谱显示含有芳环的疏水性物质最易被吸附,而烷烃和简单的碳水化合物则最有可能随土壤溶液进入下层土壤;由于到达下层土壤的DOC中易被吸附组分含量的减少,限制了其吸附能力的发挥,因此主要的吸附过程发生在40 cm以上土层,表明DOC本身的化学性质比土壤性质更能影响其吸附行为;不同类型土壤的截留量具有显著差异,这与土壤黏粒和铁铝氧化物的含量呈显著正相关.     

Application of a nifH microarray to assess the impact of environmental factors on free-living diazotrophs in a glacier forefield

Glacier forefield environments are exposed to extreme and fluctuating climatic and nutritional conditions. The high diversity of free-living diazotrophic communities found in these environments indicates that nitrogen fixers are able to efficiently cope with such conditions. In this study, a nifH microarray was used to monitor changes in diazotrophic populations in the field over a season, in the presence or absence of plants and in 2 glacier forefields characterized by a different bedrock type (siliceous or calcareous), as well as at different temperatures (10 °C, 15 °C) and under different nitrogen fertilization regimes (0, 10, 40 kg N·ha(-1)·year(-1)) in laboratory systems. Population structures responded highly dynamically to environmental changes. Plant presence had the strongest impact, which decreased toward the end of the season and with high amounts of nitrogen fertilization. Temperature and nitrogen fertilization increases indirectly affected diazotrophic communities through their positive impact on plant growth. These results indicate strong carbon limitation in young glacier forefield soils. Phylotypes related to the genus Methylocystis strongly responded to environmental variations. These methanotrophic microorganisms, which are able to retrieve nitrogen and carbon from the atmospheric pool, are particularly adapted to the extreme nutritional conditions found in glacier forefields.     

Ammonium, nitrate, and proton fluxes along the maize root

Ion-selective microelectrodes were used to measure NH₄⁺, NO₃^– and H⁺ fluxes along the primary root of maize seedlings. Plants were exposed to nutrient solutions containing NH₄⁺, NO₃^– or both ions. Nitrogen fluxes along the root varied substantially among the different treatments. Net NH₄⁺ and NO₃^– uptake and H⁺ extrusion were low at the very apex of the root and generally increased in the more basal regions. In the absence of nitrogen or in the presence of NO₃^– alone, net H⁺ uptake (and root surface alkalinization) occurred at the root tip (0–1 mm), whereas net H⁺ extrusion occurred in all other regions. In the presence of NH₄⁺ alone, a dramatic increase in net H⁺ extrusion was detected in all regions except for the region 6–11 mm from the apex. In contrast, when NO₃^– alone was supplied, net H⁺ extrusion was depressed at all locations except for the tip (0–1 mm). When both NH₄⁺ and NO₃^– were supplied, NO₃^– uptake was suppressed at all locations while net H⁺ extrusion was increased relative to NO₃^– alone. The capacities to absorb NH₄⁺ and NO₃^– at the tip were similar, as indicated by flux rates when NH₄⁺ or NO₃^– were supplied as sole sources, but when supplied together, net NO₃^– uptake was half that of net NH₄⁺ uptake, indicating that NH₄⁺ may satisfy the nitrogen requirements of the poorly vascularized apical tissue in the most energy-efficient way. The high spatial resolution of the measurements enabled us to establish that acidification in the root expansion zone is maintained regardless of nitrogen source.     

Effects of increased soil water availability on grassland ecosystem carbon dioxide fluxes

There is considerable interest in how ecosystems will respond to changes in precipitation. Alterations in rain and snowfall are expected to influence the spatio-temporal patterns of plant and soil processes that are controlled by soil moisture, and potentially, the amount of carbon (C) exchanged between the atmosphere and ecosystems. Because grasslands cover over one third of the terrestrial landscape, understanding controls on grassland C processes will be important to forecast how changes in precipitation regimes will influence the global C cycle. In this study we examined how irrigation affects carbon dioxide (CO₂) fluxes in five widely variable grasslands of Yellowstone National Park during a year of approximately average growing season precipitation. We irrigated plots every 2 weeks with 25% of the monthly 30-year average of precipitation resulting in plots receiving approximately 150% of the usual growing season water in the form of rain and supplemented irrigation. Ecosystem CO₂ fluxes were measured with a closed chamber-system once a month from May-September on irrigated and unirrigated plots in each grassland. Soil moisture was closely associated with CO₂ fluxes and shoot biomass, and was between 1.6% and 11.5% higher at the irrigated plots (values from wettest to driest grassland) during times of measurements. When examining the effect of irrigation throughout the growing season (May–September) across sites, we found that water additions increased ecosystem CO₂ fluxes at the two driest and the wettest sites, suggesting that these sites were water-limited during the climatically average precipitation conditions of the 2005 growing season. In contrast, no consistent responses to irrigation were detected at the two sites with intermediate soil moisture. Thus, the ecosystem CO₂ fluxes at those sites were not water-limited, when considering their responses to supplemental water throughout the whole season. In contrast, when we explored how the effect of irrigation varied temporally, we found that irrigation increased ecosystem CO₂ fluxes at all the sites late in the growing season (September). The spatial differences in the response of ecosystem CO₂ fluxes to irrigation likely can be explained by site specific differences in soil and vegetation properties. The temporal effects likely were due to delayed plant senescence that promoted plant and soil activity later into the year. Our results suggest that in Yellowstone National Park, above-normal amounts of soil moisture will only stimulate CO₂ fluxes across a portion of the ecosystem. Thus, depending on the topographic location, grassland CO₂ fluxes can be water-limited or not. Such information is important to accurately predict how changes in precipitation/soil moisture will affect CO₂ dynamics and how they may feed back to the global C cycle.     

Effects of forest clear-cutting on the carbon and nitrogen fluxes through podzolic soil horizons

Effects of clear-cutting on the dissolved fluxes of organic C (DOC), organic N (DON), NO₃ ^– and NH₄ ⁺ through surface soil horizons were studied in a Norway spruce dominated mixed boreal forest in eastern Finland. Bulk deposition, total throughfall and soil water from below the organic (including understorey vegetation and, after clear-cutting, also logging residues), eluvial and illuvial horizons were sampled weekly from 1993 to 1999. Clear-cutting was carried out in September 1996. The removal of the tree canopy decreased the deposition of DOC and DON to the forest floor and increased that of NH₄ ⁺ and NO₃ ^– but did not affect the deposition of total N (DTN, <3 kg ha^–1 a^–1). The leaching of DOC and DON from the organic horizon increased over twofold after clear-cutting (fluxes were on an average 168 kg C and 3.3 kg N ha^–1 a^–1), but the increased outputs were effectively retained in the surface mineral soil horizons. Inorganic N deposition was mainly retained by the logging residues and organic horizon indicating microbial immobilization. Increased NO₃ ^– formation reflected as elevated concentrations in the percolate from below the mineral soil horizons were observed especially in the third year after clear-cutting. However, the changes were small and the increased leaching of DTN from below the illuvial horizon remained small (<0.4 kg ha^–1 a^–1) and mainly DON. Effects of clear-cutting on the transport of C and N to surface waters will probably be negligible.     

Short-term responses of ecosystem carbon fluxes to experimental soil warming at the Swiss alpine treeline

Climatic warming will probably have particularly large impacts on carbon fluxes in high altitude and latitude ecosystems due to their great stocks of labile soil C and high temperature sensitivity. At the alpine treeline, we experimentally warmed undisturbed soils by 4 K for one growing season with heating cables at the soil surface and measured the response of net C uptake by plants, of soil respiration, and of leaching of dissolved organic carbon (DOC). Soil warming increased soil CO₂ effluxes instantaneously and throughout the whole vegetation period (+45%; +120 g C m y^?1). In contrast, DOC leaching showed a negligible response of a 5% increase (NS). Annual C uptake of new shoots was not significantly affected by elevated soil temperatures, with a 17, 12, and 14% increase for larch, pine, and dwarf shrubs, respectively, resulting in an overall increase in net C uptake by plants of 20–40 g C m^?2y^?1. The Q ₁₀ of 3.0 measured for soil respiration did not change compared to a 3-year period before the warming treatment started, suggesting little impact of warming-induced lower soil moisture (?15% relative decrease) or increased soil C losses. The fraction of recent plant-derived C in soil respired CO₂ from warmed soils was smaller than that from control soils (25 vs. 40% of total C respired), which implies that the warming-induced increase in soil CO₂ efflux resulted mainly from mineralization of older SOM rather than from stimulated root respiration. In summary, one season of 4 K soil warming, representative of hot years, led to C losses from the studied alpine treeline ecosystem by increasing SOM decomposition more than C gains through plant growth.     

Snow depth, soil freezing, and fluxes of carbon dioxide, nitrous oxide and methane in a northern hardwood forest

Soil–atmosphere fluxes of trace gases (especially nitrous oxide (N₂O)) can be significant during winter and at snowmelt. We investigated the effects of decreases in snow cover on soil freezing and trace gas fluxes at the Hubbard Brook Experimental Forest, a northern hardwood forest in New Hampshire, USA. We manipulated snow depth by shoveling to induce soil freezing, and measured fluxes of N₂O, methane (CH₄) and carbon dioxide (CO₂) in field chambers monthly (bi-weekly at snowmelt) in stands dominated by sugar maple or yellow birch. The snow manipulation and measurements were carried out in two winters (1997/1998 and 1998/1999) and measurements continued through 2000. Fluxes of CO₂ and CH₄ showed a strong seasonal pattern, with low rates in winter, but N₂O fluxes did not show strong seasonal variation. The snow manipulation induced soil freezing, increased N₂O flux and decreased CH₄ uptake in both treatment years, especially during winter. Annual N₂O fluxes in sugar maple treatment plots were 207 and 99 mg N m⁻² yr⁻¹ in 1998 and 1999 vs. 105 and 42 in reference plots. Tree species had no effect on N₂O or CO₂ fluxes, but CH₄ uptake was higher in plots dominated by yellow birch than in plots dominated by sugar maple. Our results suggest that winter fluxes of N₂O are important and that winter climate change that decreases snow cover will increase soil:atmosphere N₂O fluxes from northern hardwood forests.     

Pools and fluxes of carbon in three Norway spruce ecosystems along a climatic gradient in Sweden

This paper presents an integrated analysis of organic carbon (C) pools in soils and vegetation, within-ecosystem fluxes and net ecosystem exchange (NEE) in three 40-year old Norway spruce stands along a north-south climatic gradient in Sweden, measured 2001–2004. A process-orientated ecosystem model (CoupModel), previously parameterised on a regional dataset, was used for the analysis. Pools of soil organic carbon (SOC) and tree growth rates were highest at the southernmost site (1.6 and 2.0-fold, respectively). Tree litter production (litterfall and root litter) was also highest in the south, with about half coming from fine roots (<1 mm) at all sites. However, when the litter input from the forest floor vegetation was included, the difference in total litter input rate between the sites almost disappeared (190–233 g C m⁻² year⁻¹). We propose that a higher N deposition and N availability in the south result in a slower turnover of soil organic matter than in the north. This effect seems to overshadow the effect of temperature. At the southern site, 19% of the total litter input to the O horizon was leached to the mineral soil as dissolved organic carbon, while at the two northern sites the corresponding figure was approx. 9%. The CoupModel accurately described general C cycling behaviour in these ecosystems, reproducing the differences between north and south. The simulated changes in SOC pools during the measurement period were small, ranging from −8 g C m⁻² year⁻¹ in the north to +9 g C m⁻² year⁻¹ in the south. In contrast, NEE and tree growth measurements at the northernmost site suggest that the soil lost about 90 g C m⁻² year⁻¹. An erratum to this article can be found at     

Long-term effects of agriculture on soil carbon pools and carbon chemistry along a Hawaiian environmental gradient

Intensive agriculture has the potential to reduce soil carbon stocks in the years following initial cultivation, although the magnitude and direction of the effect can vary with ecosystem and management factors. Agriculture can also shift the carbon chemistry of soils via changes in crop plant chemistry, decomposition, and/or soil amendments [e.g. black carbon (i.e. charcoal)]. It is possible that soil carbon levels can recover if intensive cultivation ends, but the factors driving the extent and quality of this recovery are not well understood. Here, we examined soil carbon pool sizes and carbon chemistry >200 years after intensive cultivation by early Hawaiians. We compared soils from an extensive pre-European-contact agricultural field system with reference sites under similar modern management. Sites were selected along a climate and soil weathering gradient to investigate interactions between historic land use and ecosystem properties, such as soil mineralogy, in driving soil carbon recovery. Soil carbon content was measured from 0 to 30 cm depth, and carbon chemistry was assessed using ¹³C nuclear magnetic resonance spectroscopy. Overall, we found significantly lower soil carbon stocks in pre-contact agricultural sites compared to reference sites. Radiocarbon dating of bulk soil carbon showed a trend toward older carbon in agricultural versus reference soils, suggesting decreased retention of newer C in agricultural sites. Radiocarbon dating of macroscopic charcoal particles from under agricultural field walls indicated that there were black carbon inputs concurrent with pre-contact agricultural activity. Nonetheless, black carbon and carbonyl carbon levels were lower in agricultural versus reference soils, suggesting decreased retention of specific carbon groups in cultivated sites. Proteins were the only biomolecule higher in abundance in agricultural versus reference sites. Finally, there was an interacting effect of soil mineralogy and historic land use on soil carbon stocks. Whereas short range order (SRO) minerals were positively associated with total soil carbon overall, differences in soil carbon between agricultural and reference soils were largest in soils with high concentrations of SRO minerals. Our results indicate that the negative effect of agriculture on soil carbon stocks can be long-lived, may be associated with persistent changes in soil carbon chemistry, and can vary with soil mineralogical properties.     

Controls on fluxes and export of dissolved organic carbon in grasslands with contrasting soil types

Export of dissolved organic carbon (DOC) from grassland ecosystems can be an important C flux which directly affects ecosystem C balance since DOC is leached from the soil to the groundwater. DOC fluxes and their controlling factors were investigated on two grassland sites with similar climatic conditions but different soil types (Vertisol vs. Arenosol) for a 2.5-year period. Parts of both grasslands were disturbed by deep ploughing during afforestation. Contrary to what was expected, ploughing did not increase DOC export but surface soil DOC concentrations decreased by 28% (Vertisol) and 14% (Arenosol). DOC flux from the soil profile was negatively influences by the clay content of the soil with seven times larger DOC export in the clay-poor Arenosol (55 kg C ha^?1 a^?1) than in the clay-rich Vertisol (8 kg C ha^?1 a^?1). At the Arenosol site, highest DOC concentrations were measured in late summer, whereas in the Vertisol there was a time lag of several months between surface and subsoil DOC with highest subsoil DOC concentrations during winter season. DOC export was not correlated with soil organic carbon stocks. Large differences in ¹⁴C concentrations of 22–40 pMC between soil organic carbon and DOC in the subsoil indicated that both C pools are largely decoupled. We conclude that DOC export at both sites is not controlled by the vegetation but by physicochemical parameters such as the adsorption capacity of soil minerals and the water balance of the ecosystem. Only in the acidic sandy Arenosol DOC export was a significant C flux of about 8% of net ecosystem production.     

Biogeochemical pools and fluxes of carbon and nitrogen in a maritime tundra near penguin colonies along the Antarctic Peninsula

There is limited information regarding biogeochemical pools and fluxes in maritime tundra ecosystems along the Antarctic Peninsula. To collect baseline information on biogeochemical processes in a tundra ecosystem dominated by two vascular plant species (Colobanthus quitensis and Deschampsia antarctica) at Biscoe Point off the coast of Anvers Island, we measured pools and fluxes of C and N in transplanted tundra microcosm cores, complemented with sampling of precipitation and surface runoff. Snow and snowmelt from the tundra collection site and soil leachates from the cores were enriched with N and dissolved organic carbon compared to precipitation and snowmelt samples collected at Palmer Station, indicating high loading of N and organic matter from the penguin colonies adjacent to the tundra site. Relatively high values of δ¹⁵N in the live and dead biomass of D. antarctica and C. quitensis (5.6–25.1‰) indicated an enrichment of N in this tundra ecosystem, possibly through N inputs from adjacent penguin colonies. Stepwise multiple linear regressions found that ecosystem respiration and gross primary production were best predicted by live biomass of D. antarctica, suggesting a disproportionately high contribution of D. antarctica to CO₂ fluxes. The cores with higher δ¹⁵N and lower δ¹³C in the soil organic horizon exhibited higher CO₂ fluxes. The results suggest that abundant N inputs from penguin colonies and the competitive balance between plant species might play a critical role in the response of tundra ecosystems along the Antarctic Peninsula to projected climate change.