Microfungal biodeterioration of historic paper: Preliminary FTIR and microbiological analyses

Paper is subjected to numerous biodeterioration processes, which may cause the irreversible degradation of important documents and works of art. Many chemical and physical factors can affect these processes and their behaviour, and fungi seem to play a key role in biodeteriorating paper materials. This study is mainly aimed at verifying the presence of fungi in biodeteriorated 18th century etchings, and characterizing the paper surface by means of Fourier transform infrared (FTIR) spectroscopy and fluorescence under UV radiation. The laboratory tests highlight the presence of fungal entities from all the samples investigated. Specifically, 14 species were identified; three of them were never isolated from paper until now. Furthermore, the data gathered do not confirm the theory according to which there is a correspondence between fluorescence of the stains under UV radiation and the vitality of microfungi. Finally, possible correlations among paper composition (as determined by FTIR), mode of conservation and fungal attack are presented and discussed.     

Green light effects on biological systems: a new biophysical phenomenon

This paper reports a new phenomenon connected with the influence of green light (GL) on biological systems. Our experiments have revealed an antioxidant effect of GL on cells subjected to lethal doses of UV at the cellular level and a protective effect of GL on DNA denatured by UV, coupled with a structural modification of DNA macromolecules under GL irradiation, at the molecular level. Mouse melanocyte cultures are subjected to UV irradiations with L₅₀ fluxes of 16.0 J m^− 2 s^− 1. GL is obtained from a strontium aluminate pigment, which emits GL under UV activation. Cells grown in GL, prior to UV irradiation, present a clear surprising protective effect with surviving values close to the controls. A GL antioxidant effect is suggested to be mediated through GL influence on cellular water cluster dynamics. To test this hypothesis, reactive oxygen species (ROS) are determined in cell cultures. The results revealed a decrease of cellular ROS generation in the UV-irradiated samples protected by a previous 24 h of GL irradiation. At the DNA level, the same type of GL protection against UV damage is recorded by gel electrophoresis and by UV spectroscopy of the irradiated DNA molecules. Two physical methods, impedance spectroscopy and chronoamperometry, have revealed at the level of GL-irradiated DNA molecules spectral modifications that correlate with the UV spectroscopy results. The interaction between the chargeless photons and the field of water molecules from the cellular compartments is discussed in relation with the new field of macroscopic quantum coherence phenomena.     

Arginine‐derived carbon nanoparticles for determination of Cr(VI) in water samples

Hexavalent chromium, Cr(VI), is a toxic and carcinogenic ion that poses significant risks toward human health and the environment. Due to its extensive industrial use and high water solubility, Cr(VI) can easily contaminate drinking water sources. Therefore, it is essential to develop methods to detect Cr(VI) in water samples. Recently, carbon quantum dots – being biocompatible, easy to synthesize, and cost‐effective fluorophores – have been successfully applied for the determination of different heavy metal ions. In this study, arginine‐derived carbon nanoparticles were synthesized using a solvent‐free one‐pot thermal method. These carbon nanoparticles were characterized using transmission electron microscopy, dynamic light scattering analysis, infrared spectroscopy, ultraviolet–visible (UV–vis) light spectroscopy, fluorescence spectroscopy, and CHNO elemental analysis before being used to design a sensor for Cr(VI). The sensor's signal was optimized and the arginine‐derived carbon nanoparticle‐based Cr(VI) determination method was shown to have a limit of detection of 18 nM, a limit of quantification of 60 nM, and a linear response range of 0.06–100 μM. The sensor's selectivity toward Cr(VI) was studied and a potential interfering ion was identified and dealt with. Finally, the sensor was successfully applied for the determination of Cr(VI) in tap water and mineral water samples.     

The contribution of water soluble and water insoluble organic fractions to oxygen uptake rate during high rate composting

This study aims to establish the contribution of the water soluble and water insoluble organic fractions to total oxygen uptake rate during high rate composting process of a mixture of organic fraction of municipal solid waste and lignocellulosic material. This mixture was composted using a 20 l self-heating pilot scale composter for 250 h. The composter was fully equipped to record both the biomass-temperature and oxygen uptake rate. Representative compost samples were taken at 0, 70, 100, 110, 160, and 250 h from starting time. Compost samples were fractionated in water soluble and water insoluble fractions. The water soluble fraction was then fractionated in hydrophilic, hydrophobic, and neutral hydrophobic fractions. Each fraction was then studied using quantitative (total organic carbon) and qualitative analysis (diffuse reflectance infrared spectroscopy and biodegradability test). Oxygen uptake rates were high during the initial stages of the process due to rapid degradation of the soluble degradable organic fraction (hydrophilic plus hydrophobic fractions). Once this fraction was depleted, polymer hydrolysis accounted for most of the oxygen uptake rate. Finally, oxygen uptake rate could be modeled using a two term kinetic. The first term provides the oxygen uptake rate resulting from the microbial growth kinetic type on easily available, no-limiting substrate (soluble fraction), while the second term considers the oxygen uptake rate caused by the degradation of substrate produced by polymer hydrolysis.     

Metallic silver nanoparticle: a therapeutic agent in combination with antifungal drug against human fungal pathogen

Silver nanoparticles (Ag-NPs) are known to have inhibitory and fungicidal effects. Resistance against fungal infection has emerged as a major health problem in recent years, which needs great and immediate concern. Here, we report the extracellular biological synthesis of silver nanoparticles through a simple green route approach using a marine mangrove (Rhizophora mucronata) and silver nitrate. Aqueous extract of marine mangrove helped in reduction and was used as capping agent in biological synthesis. Nanoparticles were characterized using microscopy and spectroscopy techniques such as HRTEM, UV–Vis absorption spectroscopy and FTIR spectroscopy. X-ray diffraction analysis showed that the nanoparticles had face centered cubic structure with crystalline nature. FTIR spectroscopy showed the presence of different functional groups, such as hydroxyl and carbonyl, involved in the synthesis of nanoparticles. The antifungal activity of fluconazole and itraconazole was enhanced against the tested pathogenic fungi in the presence of Ag-NP and confirmed from increase in fold area of inhibition. This environmentally friendly method of biological synthesis can be easily integrated for various medical applications.     

Two‐dimensional chromatography method applied to the enantiomeric determination of lansoprazole in human plasma by direct sample injection

A two‐dimensional HPLC method based on the direct injection of biological samples has been developed and validated for the determination of lansoprazole enantiomers in human plasma. The lansoprazole enantiomers were extracted from the biological matrix using an octyl restricted access media bovine serum albumin column (C₈ RAM BSA) and the enantioseparation was performed on an amylose tris(3,5‐dimethoxyphenylcarbamate) chiral column using acetonitrile:water (35:65 v/v) and UV detection at 285 nm. Analysis time was 25 min with no time spent on sample preparation. The method was applied to the analysis of the plasma samples obtained from nine Brazilian volunteers who received a 30 mg oral dose of racemic lansoprazole and was able to quantify the enantiomers of lansoprazole in the clinical samples analyzed. Chirality 2010. © 2009 Wiley‐Liss, Inc.     

Use of NMR techniques for toxic organophosphorus compound profiling

This review presents with selected examples the versatility of nuclear magnetic resonance (NMR) spectroscopy in the analysis of toxic organophosphorus (OP) compounds, i.e. OP pesticides and chemical warfare agents (CWAs). Several NMR applications of biological importance, like studies on inhibition mechanism, metabolism, and exposure determination, are presented. The review also concerns with the environmental analysis of OP compounds by NMR spectroscopy. Residue analysis of environment and food samples as well as characterization of degradation in environment is discussed. Some of the NMR studies that have been done to support the Chemical Weapons Convention, i.e. the development of suitable CWA detoxification means and the method development of verification analysis for CWAs and their degradation products, are outlined.     

Resolution of binary mixtures of rifamycin SV and rifampicin by UV/VIS spectroscopy and partial least-squares method (PLS)

A procedure is proposed for the joint determination of rifamycin SV and rifampicin by UV/VIS spectroscopy. A partial least-squares regression (PLS) was used for the resolution of the overlapping spectrophotometric signals from mixtures of the two drugs. The application of a genetic algorithm to select some of the predictor variables allows one to considerably reduce the number of experimental variables, as well as to improve the prediction capacity of the PLS model constructed with these selected potentials. Finally, the methods were applied to the determination of these drugs in biological samples.     

The role of nuclear magnetic resonance in medical mycology

With the continued emergence of drug-resistant invasive mycoses, rapid fungal identification and susceptibility testing are needed. Nuclear magnetic resonance (NMR) spectroscopy generates complex data (“fingerprints”) based on chemical composition and metabolite profiles, which can be applied to suspensions of living microorganisms or mammalian cells, cell and tissue extracts, biological fluids, tissue biopsies, and noninvasive diagnosis in patients when linked to MRI. Closely related fungal species can be rapidly identified based on their NMR spectra, and antifungal drug effects can be measured as metabolic end points. The feasibility of classifying groups of microorganisms directly from biological samples has been demonstrated in animal models and human infections. Potential advantages of NMR spectroscopy in medical mycology include accurate identification, automated sample delivery, automated analysis using computer-based methods, rapid turnaround time, high throughput, and low running costs. More work is needed to validate the automated approach on large data sets covering a broad spectrum of potential pathogens.     

Specific and sensitive quantitation of 2,2′-dichlorodiethyl sulphide (sulphur mustard) in water, plasma and blood: application to toxicokinetic study in the rat after intravenous intoxication

A sensitive and specific capillary gas chromatographic method has been developed to measure trace amounts of 2,2′-dichlorodiethyl sulphide (sulphur mustard) in environmental or biological samples. Sulphur mustard was isolated from water or plasma by a solid-phase extraction procedure and from blood by liquid—liquid extraction. The accuracy and precision of the methods were demonstrated using replicate analyses of spiked water, plasma or blood: within-run and between-run variabilities were less than 20%. These analytical methods were used to evaluate the rate of sulphur mustard degradation in water or plasma. Good linear calibration curves, with a detection limit of 45 ng/ml, were obtained for quantitation and determination of sulphur mustard in blood following its intravenous administration to rats. Initial toxicokinetic data were obtained.     

Progress in biopulping of non-woody materials: Chemical, enzymatic and ultrastructural aspects of wheat straw delignification with ligninolytic fungi from the genus Pleurotus

Abstract: During screening of basidiomycetes for wheat straw delignification, considerable lignin degradation with a limited attack to cellulose was attained with Pleurotus eryngii . Straw solid-state fermentation (SSF) was optimized, and the enzymatic mechanisms for lignin degradation were investigated. No lignin peroxidase was detected under liquid or SSF conditions, but high laccase and aryl-alcohol oxidase levels were found. The latter enzyme has been fully characterized in PI. eryngii and it seems to be involved in a cyclic redox system for H₂0₂ generation from aromatic compounds. Results obtained using homoveratric acid suggest that Pleurotus laccase could be involved in degradation of phenolic and non-phenolic lignin moieties. Histological and ultrastructural studies provided some general morphological characteristics of the fungal attack on wheat straw. Whereas a simultaneous degradation pattern was observed in straw treated with Phanerochaete chrysosporium , PI. eryngii caused partial degradation of middle lamella and separation of individual sclerenchymatic fibers. When these straw samples were subjected to refining tests, energy saving after biological treatment was the highest in the case of straw treated with PI. eryngii , which also produced the lowest substrate loss. From these results, a correlation between preferential removal of lignin, separation of sclerenchymatic fibers and pulping properties was provided during fungal treatment of wheat straw.     

Effect of hot water and ultra violet radiation on the incidence of seedborne fungi of okra

Seed samples of okra (Abelmoschus esculentus (L.) Moench) variety Arka anamika were subjected to hot water treatment at 42, 52 and 62°C for a period of 30 min and UV light treatment for 10, 20, 30 min at 28 ± 2°C. Their efficacy was tested against some seedborne fungal species. Among them, seeds under hot water treatment at 52°C for 30 min and UV light at 20 min were found to be more effective in the improvement of crop, both in greenhouse and field conditions. Ultimately, there was increase in the total number of leaves, fruits, length of the fruit, girth and biomass of the plants. Apart from these the total number of seeds per fruit, 1000 seed weight and ascorbic acid content were also found to be enhanced. These treatments also reduced the incidence of mycoflora in the seeds and thereby enhanced the seed germination percentage and vigour index of the seedlings.     

UV radiation biomonitoring using cell compartmentation of UV-absorbing compounds in herbarium samples of a liverwort

Ultraviolet-absorbing compounds (UVACs) were analyzed in 90 herbarium samples of the liverwort Jungermannia exsertifolia subsp. cordifolia collected throughout Spain in the period 1913–2006, in order to evaluate their usefulness in UV radiation biomonitoring. This was assessed, for the first time in bryophytes, differentiating the soluble (mainly vacuolar) and insoluble (cell wall-bound) UVACs (respectively, SUVACs and IUVACs), which may represent different mechanisms to cope with UV radiation. The bulk levels of SUVACs and IUVACs, and the concentrations of seven individual compounds (five SUVACs and two IUVACs) were analyzed, and several environmental variables of the sampling points were obtained: longitude, latitude, altitude, ozone column, and modelled UV levels.Diverse positive relationships of UVAC variables with UV radiation levels were identified in both the temporal and spatial scales. The soluble compound p-coumaroylmalic acid showed significantly higher concentrations in the years after the onset of stratospheric ozone degradation (around 1975) with respect to the previous years. The bulk level and the concentrations of three individual SUVACs were higher in the Spanish samples analyzed in the present study than in the northern European samples analyzed in a previous study in which IUVACs were not considered. The bulk level of IUVACs was the biological variable best spatially correlated with the UV exposure of the samples and with important factors determining it, such as altitude and latitude. Furthermore, the bulk level of IUVACs was the biological variable selected by a stepwise multiple linear regression analysis to reconstruct the past levels of UV-B radiation. The reconstructed UV-B did not show a clear trend in the period 1913–2006, which was coincident with other climatic and biological UV reconstructions. Both SUVACs and IUVACs were significant loading factors differentiating summer and autumn samples in the Principal Components Analysis conducted using both UVACs and the environmental variables, but again the bulk level of IUVACs was the main loading factor differentiating the samples collected from the highest and most UV-exposed localities (Sierra Nevada). In general, these findings suggest that UVACs were stimulated by increased UV levels in time or space, and that IUVACs would be better UV protectants than SUVACs, probably due to their more efficient screening capacity.Overall, UVACs of J. exsertifolia subsp. cordifolia were good UV biomarkers, and their location in the soluble or cell wall-bound fractions determined their usefulness in the different aspects of UV biomonitoring, including the assessment of the UV-B increase associated to anthropogenic ozone degradation.     

Tuning FRET efficiency as a novel approach for improved detection of naphthalene: application to environmental samples

Naphthalene has emission in the ultraviolet (UV) region, limiting its trace level determination in biological and environmental samples due to detrimental effect of UV light on the living cell and interference from other substances having emission in the UV region. Fluorescence resonance energy transfer strategy is adopted for determination of traces naphthalene in the visible region. Significant improvement of lowest detection limit of naphthalene has been achieved through tuning of fluorescence resonance energy transfer efficiency. Anthranilic acid pyrene (ANP) conjugate provides lowest detection limit for naphthalene among three probes studied, viz. ANB, aniline‐ pyrene conjugate (APA) and ANP. ANP efficiently measures naphthalene content in river water. Copyright © 2016 John Wiley & Sons, Ltd.     

Analysis of Fungal Pellets by UV-Visible Spectrum Diffuse Reflectance Spectroscopy

The application of the UV-visible spectrum diffuse reflectance spectroscopy for the determination of intracellular pH in vivo, for determination of cytochrome content, and for the noninvasive in vivo detection of the redox state of fungal mitochondrial cytochromes in filamentous fungi is introduced. The time course of the intracellular pH values, mitochondrial cytochromes, and CO-binding pigments content and the correlations between the actual redox state of cytochrome aa(3) and saturation of growth medium with oxygen in pellets of the basidiomycete Phanerochaete chrysosporium were determined. As the test microorganism, the yeast Saccharomyces cerevisiae was used. UV-visible spectrum diffuse reflectance spectroscopy proved to be a promising method for the quick and simple analysis of light-impermeable biological structures for which the classical transmittance spectrophotometric methods are difficult to implement.     

城市供水系统对水中真菌数量和群落结构的影响

【背景】对于饮用水中的微生物污染,绝大多数研究集中在细菌、病毒及原虫和蠕虫。由于真菌中包含多种潜在致病菌,应当引起人们的关注。【目的】研究城市供水系统中真菌数量、群落组成变化及可能存在的潜在致病真菌。【方法】利用MEA和RB两种培养基,对供水系统中的原水和两个水厂净水工艺过程及不同供水模式用户龙头水样进行培养法计数统计。提取上述样本总DNA,并应用Illumina MiSeq平台进行ITS1区高通量测序。【结果】从15个样本中共获得有效序列579 470条,1 260个OTU,包含8个门26个纲67个目228个属的真菌。门水平上子囊菌门真菌为供水系统优势真菌,属水平上不同样本存在差异,但曲霉属和枝顶孢属真菌在所有样本中均存在;培养法和高通量测序结果共同显示,活性炭过滤出水真菌数量和物种丰富度均较前一工艺有所上升;氯化消毒对真菌数量、物种多样性及物种组成影响显著;经过供水管网输配和二次供水设施后,用户龙头水样本真菌数量和物种丰富度明显高于出厂水。【结论】供水系统中的优势真菌为子囊菌门(Ascomycota),该门真菌可穿透净水工艺过程的多级屏障;水厂净水工艺能有效去除水中可培养真菌,生物活性炭过滤工艺能够影响真菌数目及物种多样性;供水管网及二次供水设施是末端饮用水中真菌污染的重要来源;供水系统中存在潜在致病真菌。     

Study of the initial stages of 2-methylpyridine catabolism by <Emphasis Type="Italic">Arthrobacter</Emphasis> sp. strain KM-2MP

Strain Arthrobacter sp. KM-2MP isolated from soil samples treated with pyridine and its derivatives is able to utilize 2-methylpyridine (2-MP) as the only source of carbon, nitrogen, and energy. According to the results of UV spectroscopy of the culture liquid, the substrate (2.5 g/l) is completely utilized within 24 h. Intermediate products of 2-MP degradation were detected and identified using gas chromatography-mass spectrometry analysis. On the basis of the obtained data, catabolic pathways of the substrate are proposed. The strain has successfully passed the tests and is recommended for 2-MP removal from industrial wastewater.     

Interactions between fungal growth, substrate utilization and enzyme production during shallow stationary cultivation of Phanerochaete chrysosporium on cotton stalks

Microbial pretreatment of lignocellulosic feedstocks is an environment friendly alternative to physio-chemical pretreatment methods. A better understanding of the interactive fungal mechanisms in biological systems is essential for enhancing performance and facilitating scale-up and commercialization of this pretreatment technique. In this study, mathematical models were developed for describing cellulose and hemicellulose consumption, lignin degradation, cellulase and ligninolytic enzyme production and oxygen uptake associated with the growth of Phanerochaete chrysosporium during a 14-day shallow stationary submerged fungal pretreatment process on cotton stalks. Model parameters were estimated and validated by Statistics Toolbox in MatLab 7.1. Models yielded sufficiently accurate predictions for cellulose and hemicellulose consumption (R2=0.9772 and 0.9837), lignin degradation (R2=0.9879 and 0.8682) and ligninolytic enzyme production (R2=0. 8135 and 0.9693) under both 1-day and 3-day oxygen flushing conditions, respectively. The predictabilities for fungal growth (R2=0.6397 and 0.5750) and cellulase production (R2=0.0307 and 0.3046) for 1-day and 3-day oxygen flushing, respectively, and oxygen uptake (R2=0.5435) for 3-day oxygen flushing were limited.     

Anaerobic methyl tert-butyl ether-degrading microorganisms identified in wastewater treatment plant samples by stable isotope probing

Anaerobic methyl tert-butyl ether (MTBE) degradation potential was investigated in samples from a range of sources. From these 22 experimental variations, only one source (from wastewater treatment plant samples) exhibited MTBE degradation. These microcosms were methanogenic and were subjected to DNA-based stable isotope probing (SIP) targeted to both bacteria and archaea to identify the putative MTBE degraders. For this purpose, DNA was extracted at two time points, subjected to ultracentrifugation, fractioning, and terminal restriction fragment length polymorphism (TRFLP). In addition, bacterial and archaeal 16S rRNA gene clone libraries were constructed. The SIP experiments indicated bacteria in the phyla Firmicutes (family Ruminococcaceae) and Alphaproteobacteria (genus Sphingopyxis) were the dominant MTBE degraders. Previous studies have suggested a role for Firmicutes in anaerobic MTBE degradation; however, the putative MTBE-degrading microorganism in the current study is a novel MTBE-degrading phylotype within this phylum. Two archaeal phylotypes (genera Methanosarcina and Methanocorpusculum) were also enriched in the heavy fractions, and these organisms may be responsible for minor amounts of MTBE degradation or for the uptake of metabolites released from the primary MTBE degraders. Currently, limited information exists on the microorganisms able to degrade MTBE under anaerobic conditions. This work represents the first application of DNA-based SIP to identify anaerobic MTBE-degrading microorganisms in laboratory microcosms and therefore provides a valuable set of data to definitively link identity with anaerobic MTBE degradation.     

Analysis of antibiotics in urine and wipe samples from environmental and biological monitoring--comparison of HPLC with UV-, single MS- and tandem MS-detection

Results of the simultaneous determination of the structurally different antibiotics cefazoline, cefotiame, cefuroxime, chloramphenicol, ciprofloxacin, ofloxacin, sulfamethoxazole and trimethoprim from environmental and biological monitoring using high-performance liquid chromatography with UV, single mass and tandem mass spectrometry were compared. For sample enrichment and clean-up a SPE method using bakerbond C18 cartridges was developed. Mean recovery rates were above 70%. Because of the complex urine matrix, only the wipe samples could be analyzed by UV-detection. However, UV-detection and single MS-detection are useful for control measurements after spillage, e.g. (LOD=1-2 ng/cm(2)). Samples from biological monitoring of occupational uptake should be analyzed by LC-MS/MS. The limits of detection (LOD) in urine ranged from 0.4 to 70 microg/L for LC-MS and 0.01 to 0.9 microg/L for LC-MS/MS detection. The limits of detection in wipe samples ranged from 0.003 to 0.13 ng/cm(2).