Extinction,survivorship and evolution of planktic foraminifera across the Cretaceous/Tertiary boundary at El Kef,Tunisia

An expanded sediment record at El Kef shows that the K/T boundary extinctions of planktic foraminifera extend over an interval from 25 cm below the geochemical boundary (Ir anomaly) to 7 cm above. Species extinctions appear sequential with complex, large, ornate forms disappearing first and smaller, less ornate, forms surviving longer. The 14 species extinctions below the boundary appear unrelated to an impact event.Cretaceous species survivorship is greater than previously assumed. About 10 species survive (22%) into Subzone P1a (Globigerina eugubina). All Cretaceous survivors are small primitive forms which are generally smaller than their ancestors in Cretaceous sediments.Species evolution after the K/T event occurs in two pulses. The first new Paleocene species evolve in the basal black clay (Zone PO) immediately after the major Cretaceous extinctions. Evolving species are small and primitive similar to Cretaceous survivors. The second pulse in species evolution occurs in the lower part of Subzone P1b with the appearance of larger more diverse species. The first major increase in carbonate sedimentation and productivity occurs at this time and signals the recoveyr of the ecosystem nearly 300,000 years after the K/T event. The species extinctions prior to the generally assumed impact event implied by the Ir anomaly, and the long recovery period of the ecosystem thereafter cannot be explained by a single impact, but suggest that multiple causes may be responsible such as climatic changes, volcanism, a sea level drop, production of warm saline bottom water and the chemical consequences associated with increased salinity.     

End-Permian stratigraphic timeline applied to the timing of marine and non-marine extinctions

A latest Permian timeline (251.9 Ma) can be constructed from the perspectives of: a global nickel spike attributed to emissions from the coeval Siberian flood-basalt eruptions, the correlative end-Permian marine mass extinction (EPME), a transition from reversed to normal paleomagnetism, and a negative anomaly in δ¹³C_carb and δ¹³C_org. In a number of marine and non-marine localities, this timeline is also correlated (to within ≤30 ky) with palynological evidence for the latest Permian destruction of terrestrial vegetation and the accompanying short-lived global fungal (Reduviasporonites) event. This correlation suggests that devastation in marine and non-marine environments was essentially coeval at a time marked by hyperthermal conditions and anoxic oceans.We utilized this proposed timeline to estimate the relative timing of the extinction of latest Permian vertebrates in the Karoo Basin of South Africa. In several sections in the Karoo, the LAD of the therapsid Dicynodon, is correlated with the proposed timeline. In the Carlton Heights section in the Karoo we estimate that the palynological changes and the fungal event occurred within ≤30 ky of the LAD of Dicynodon. Further sampling in the Karoo and other Permian–Triassic non-marine basins would help to clarify the relative timing of the global marine extinctions, plant devastation and the disappearance of non-marine vertebrates.     

Late-Quaternary megafauna extinctions have strongly reduced mammalian vegetation consumption

Aim

How much stronger would the effects of herbivorous mammals be in natural ecosystems if human-linked extinctions and extirpations had not occurred? Many mammal species have experienced range contractions, and numerous species have gone extinct in the late Quaternary, completely or in large part linked to human pressures. Therefore, herbivore consumption rates in seemingly natural ecosystems will deviate from their pre-anthropogenic state. Here, we estimate the size of this deviation.

Location

Terrestrial systems, globally.

Time period

Current.

Major taxa studied

All late-Quaternary terrestrial mammals.

Methods

We estimated and mapped vegetation consumption rate by all late-Quaternary terrestrial mammals. We did this through the estimation of natural densities and dietary needs. We mapped their consumption rate in both current ranges and present-natural ranges, that is estimated ranges in the absence of human-linked range contractions and extinctions. We compared these estimated consumption rates to current net primary productivity (NPP). We summarized the results across ecosystem types everywhere as well as for only the last remaining wilderness areas.

Results

We estimate that wild mammals consume a median of 11% of NPP (at the scale of 96.5 km × 96.5 km grid cells) in current natural areas and that this would have been much higher in the absence of extinctions and extirpations, namely 21%. Looking at the change per grid cell, the mammal losses result in a median 42% reduction in consumption rate. Importantly, we estimate very similar declines in herbivory in what are considered the last remaining wilderness areas.

Main conclusions

Our results suggest that the natural interaction of mammalian herbivores with vegetation in ecosystems across the world is strongly reduced by prehistoric and historic to recent species losses, even in the last remaining wilderness areas, likely with major effects on ecosystem structure and functioning.     

The two Early Toarcian (Early Jurassic) extinction events in ammonoids

The Early Toarcian (Early Jurassic) biological crisis was one of the ‘minor’ mass extinctions. It is linked with an oceanic anoxic event. Fossil data from sections located in northwestern European (epicontinental platforms and basins) and Tethyan (distal, epioceanic) areas indicate that Late Pliensbachian–Early Toarcian ammonoids experienced two extinction events during the Early Toarcian. The older one is linked with disruption of the Tethyan–Boreal provinciality, whereas the younger event correlates with the onset of anoxia and corresponds with the Early Toarcian mass‐extinction event. These two extinctions cannot be interpreted as episodes of a single, stepwise, event. Values of the net diversification, more than the number of extinctions, allow the two extinction events to be clearly recognized and distinguished. Values of regional net diversification for northwestern European and Tethyan faunas point to greater evolutionary dynamics in the epioceanic areas. The inclusion of Mediterranean faunas in the database proves that the ammonite turnover at the Early Toarcian mass‐extinction event was more important than previously thought. Progenitor (evolute Neolioceratoides), survivor (Dactylioceras, Polyplectus pluricostatus) and Lazarus (Procliviceras) taxa have been recognized. Different selectivity patterns are shown for the two events. The first one, linked to the disruption of the Tethyan–Boreal provinciality, has mainly affected ammonites adapted to epicontinental platforms. In the mass‐extinction event, no selectivity is recognized, because also Phylloceratina and Lytoceratina were deeply affected at species level, although their wide biogeographical distribution at clade level was a significant buffer against extinction. In contrast to Palaeozoic mass extinctions, ammonoid survivors and Lazarus taxa are characterized by complex sutures: Phylloceratina (long‐ranging ammonoids) and Polyplectus (relatively long‐ranging compared to other Ammonitina).     

Miocene biochronology and paleoceanography of the North Pacific

Biostratigraphic correlation based on microfossil datum levels, directly or indirectly tied to the paleomagnetic time scale, provides a high resolution time control for the Miocene in the equatorial and middle latitude North Pacific. Faunal changes and abundance fluctuations of planktic foraminiferal species combined with the oxygen Pacific. Faunal changes and abundance fluctuations of planktic foraminiferal species combined with the oxygen isotope record of foraminifers, reveal the paleoclimatic and paleoceanographic history. The planktic foraminiferal assemblage change in the early Miocene, extinction of Oligocene fauna and rise of a highly diverse Neogene fauna, appears to be related to increased water mass stratification in the world oceans presumably resulting from the establishment of circum-Antarctic circulation. An increase in the siliceous productivity in the eastern equatorial Pacific region between 20 and 18 Ma suggests that the vertical and horizontal circulation was intensified at that time. Climates cooled rapidly during the middle Miocene between 14 and 13 Ma suggesting the growth of a major east Antarctic ice sheet. Paleoclimatic conditions remained generally cool, although oscillating, during the late Miocene. In the late early to middle Miocene faunal provincialism developed between low and middle latitudes, and by late Miocene time a distinct provincialism similar to the present was established.     

Resistance of spiders to Cretaceous-Tertiary extinction events

Throughout Earth history a small number of global catastrophic events leading to biotic crises have caused mass extinctions. Here, using a technique that combines taxonomic and numerical data, we consider the effects of the Cenomanian-Turonian and Cretaceous-Tertiary mass extinctions on the terrestrial spider fauna in the light of new fossil data. We provide the first evidence that spiders suffered no decline at the family level during these mass extinction events. On the contrary, we show that they increased in relative numbers through the Cretaceous and beyond the Cretaceous-Tertiary extinction event.     

Mass extinctions and ocean acidification: biological constraints on geological dilemmas

The five mass extinction events that the earth has so far experienced have impacted coral reefs as much or more than any other major ecosystem. Each has left the Earth without living reefs for at least four million years, intervals so great that they are commonly referred to as ‘reef gaps’ (geological intervals where there are no remnants of what might have been living reefs). The causes attributed to each mass extinction are reviewed and summarised. When these causes and the reef gaps that follow them are examined in the light of the biology of extant corals and their Pleistocene history, most can be discarded. Causes are divided into (1) those which are independent of the carbon cycle: direct physical destruction from bolides, ‘nuclear winters’ induced by dust clouds, sea-level changes, loss of area during sea-level regressions, loss of biodiversity, low and high temperatures, salinity, diseases and toxins and extraterrestrial events and (2) those linked to the carbon cycle: acid rain, hydrogen sulphide, oxygen and anoxia, methane, carbon dioxide, changes in ocean chemistry and pH. By process of elimination, primary causes of mass extinctions are linked in various ways to the carbon cycle in general and ocean chemistry in particular with clear association with atmospheric carbon dioxide levels. The prospect of ocean acidification is potentially the most serious of all predicted outcomes of anthropogenic carbon dioxide increase. This study concludes that acidification has the potential to trigger a sixth mass extinction event and to do so independently of anthropogenic extinctions that are currently taking place.     

Mycorrhizal suppression and phosphorus addition influence the stability of plant community composition and function in a temperate steppe

Nutrient enrichment can reduce ecosystem stability, typically measured as temporal stability of a single function, e.g. plant productivity. Moreover, nutrient enrichment can alter plant–soil interactions (e.g. mycorrhizal symbiosis) that determine plant community composition and productivity. Thus, it is likely that nutrient enrichment and interactions between plants and their soil communities co-determine the stability in plant community composition and productivity. Yet our understanding as to how nutrient enrichment affects multiple facets of ecosystem stability, such as functional and compositional stability, and the role of above–belowground interactions are still lacking. We tested how mycorrhizal suppression and phosphorus (P) addition influenced multiple facets of ecosystem stability in a three-year field study in a temperate steppe. Here we focused on the functional and compositional stability of plant community; functional stability is the temporal community variance in primary productivity; compositional stability is represented by compositional resistance, turnover, species extinction and invasion. Community variance was partitioned into population variance defined as community productivity weighted average of the species temporal variance in performance, and species synchrony defined as the degree of temporal positive covariation among species. Compared to treatments with mycorrhizal suppression, the intact AM fungal communities reduced community variance in primary productivity by reducing species synchrony at high levels of P addition. Species synchrony and population variance were linearly associated with community variance with the intact AM fungal communities, while these relationships were decoupled or weakened by mycorrhizal suppression. The intact AM fungal communities promoted the compositional resistance of plant communities by reducing compositional turnover, but this effect was suppressed by P addition. P addition increased the number of species extinctions and thus promoted compositional turnover. Our study shows P addition and AM fungal communities can jointly and independently modify the various components of ecosystem stability in terms of plant community productivity and composition.     

Megafauna decline have reduced pathogen dispersal which may have increased emergent infectious diseases

The Late Quaternary extinctions of megafauna (defined as animal species > 44.5 kg) reduced the dispersal of seeds and nutrients, and likely also microbes and parasites. Here we use body-mass based scaling and range maps for extinct and extant mammal species to show that these extinctions led to an almost seven-fold reduction in the movement of gut-transported microbes, such as Escherichia coli (3.3–0.5 km² d⁻¹). Similarly, the extinctions led to a seven-fold reduction in the mean home ranges of vector-borne pathogens (7.8–1.1 km²). To understand the impact of this, we created an individual-based model where an order of magnitude decrease in home range increased maximum aggregated microbial mutations 4-fold after 20 000 yr. We hypothesize that pathogen speciation and hence endemism increased with isolation, as global dispersal distances decreased through a mechanism similar to the theory of island biogeography. To investigate if such an effect could be found, we analysed where 145 zoonotic diseases have emerged in human populations and found quantitative estimates of reduced dispersal of ectoparasites and fecal pathogens significantly improved our ability to predict the locations of outbreaks (increasing variance explained by 8%). There are limitations to this analysis which we discuss in detail, but if further studies support these results, they broadly suggest that reduced pathogen dispersal following megafauna extinctions may have increased the emergence of zoonotic pathogens moving into human populations.     

Reducing horizontal and vertical diversity in a foodweb triggers extinctions and impacts functions

Species loss can result in secondary extinctions and changes in ecosystem functions at distant trophic levels. Such effects of species loss are predicted to be affected by both the number of species lost within a trophic level (horizontal diversity) and the number of trophic levels lost (vertical diversity). We experimentally manipulated horizontal and vertical diversity within an aquatic insect community, and examined responses throughout the food web. Horizontal and vertical diversity both impacted ciliates: reduction of detritivorous insect diversity resulted in secondary extinctions and decreased density of ciliates, but only when an insect predator was simultaneously absent. Horizontal and vertical diversity differed in their effect on other foodweb processes, including detrital processing, predator growth, and densities of rotifers, flagellates and flatworms. These results caution that foodweb effects of multitrophic species loss may not be reliably predicted from manipulations of just one dimension of diversity.     

Local extinctions and recolonisations of passerine bird populations in small woods

This paper considers, for eight species of woodland bird, the factors that influenced both local extinctions and recolonisations in 145 woods over 3 years. In all species, probability of local extinction was inversely related to population size; most local extinctions occurred in woods containing one to three breeding pairs. However, considerable variation in extinction probabilities occurred between species and between years. In addition, the suitability of habitat within a wood (more extinctions in less suitable woods) was important for wren Troglodytes troglodytes, song thrush Turdus philomelos and blue tit Parus caeruleus; also, the structure of the surrounding landscape was important for blue tit, great tit Parus major, and chaffinch Fringilla coelebs (more extinctions in localities with less woodland). In only two species was the probability of recolonisation related to any of the measured variables. Wrens were more likely to recolonise larger woods, whereas song thrushes were more likely to recolonise woods with a high habitat suitability rating and those which are more isolated from other woodland     

Foraminiferal turnover across the Eocene–Oligocene transition at Fuente Caldera, southern Spain: No cause–effect relationship between meteorite impacts and extinctions

We studied planktic and small benthic foraminifera from the Fuente Caldera section, southern Spain, across the Eocene–Oligocene transition. Benthic foraminifera indicate lower bathyal depths for the late Eocene and earliest Oligocene. Detailed high-resolution sampling and biostratigraphical data allowed us to date precisely layers with evidence for meteorite impact (Ni-rich spinel), which occur in the lower part of the planktic foraminiferal Globigerapsis index Biozone and in the middle part of the small benthic foraminiferal Cibicidoides truncanus (BB4) Biozone (middle Priabonian, late Eocene). Major turnovers of foraminifera occur at the Eocene/Oligocene boundary, only. The impact did not occur at a time of planktic or benthic foraminiferal extinction events, and the late Eocene meteorite impacts did thus not cause extinction of foraminifera. The most plausible cause of the Eocene/Oligocene boundary extinctions is the significant cooling, which generated glaciation in Antarctica and eliminated most of the warm and surface-dwelling foraminifera.     

Reconstruction of Indian monsoon variability over the past 230,000 years: Planktic foraminiferal evidence from the NW Arabian Sea open-ocean upwelling area

We determined the faunal composition and total number of tests (#/g) of planktic foraminifera (> 125 μm) in core KH00-05 GOA 6 near Oman in order to decipher monsoon-induced variability of oceanographic productivity in the open-ocean upwelling area in the northwest Arabian Sea. The core contains a continuous record of sedimentation over the last 230 kyr, with the age model based on oxygen isotope and accelerator mass spectrometry ¹⁴C dates. We focused on species (Globigerina bulloides and Globigerinita glutinata) typical for SW monsoonal upwelling and species typical for NE monsoon conditions (Neogloboquadrina incompta, Neogloboquadrina dutertrei, Globigerinoides ruber, and Globigerinoides sacculifer). The changes in relative abundance of these monsoonal indicators suggest that the open-ocean upwelling area was dominated by the SW monsoon during interglacial periods, but by the NE monsoon during glacial periods.Increases in total test abundance during glacial periods confirmed that the NE monsoon rather than SW monsoon contributes largely to planktic foraminiferal productivity in this area. We argue that three types of circumstances resulted in high productivity, with nine high productivity events occurring at a 23-kyr frequency. The first type caused high productivity events at 102 and 199 ka (interglacial periods), characterized by the dominance of upwelling species, indicating high productivity during strong SW monsoons, correlated with high July insolation at 45° N. An exceptional high productivity event occurred at 37 ka during interglacial marine isotope stage (MIS) 3, with contributions from both SW and NE monsoons. The second type of high productivity event occurred at 61, 147, and 175 ka, during glacial periods, characterized by dominance of NE monsoon species, and correlated with low January insolation at 45° N. In addition, a high productivity event at 85 ka (interglacial period) also was induced by enhanced NE monsoons. The last two high productivity events occurred during transitional periods from glacial to interglacial (MIS 6/5.5 and 2/1), were characterized by the replacement of NE monsoon species with upwelling species, and corresponded to abrupt climate warming, suggesting that they are related to both accelerated SW monsoon systems and reduced NE monsoon systems.     

Why was there a delayed radiation after the end‐Palaeozoic extinctions?

Data from widespread dysaerobic facies, carbon/sulphur ratios and cerium anomalies suggest that the early Triassic was a time when anoxic conditions spread widely over epicontinental seas. These conditions, associated with marine transgression following the latest Permian regression, are likely to be a prime cause of the mass extinction of Palaeozoic marine faunas. The occurrence of many Lazarus taxa in the Middle and Upper Triassic indicates, however, that the extinctions at the end of the Permian were less severe than has been widely assumed, and that the turnover from Palaeozoic to Mesozoic faunas was considerably extended in time, being finally accomplished only after the end‐Triassic mass extinction event.     

Impacts of climate warming and habitat loss on extinctions at species' low-latitude range boundaries

Polewards expansions of species' distributions have been attributed to climate warming, but evidence for climate‐driven local extinctions at warm (low latitude/elevation) boundaries is equivocal. We surveyed the four species of butterflies that reach their southern limits in Britain. We visited 421 sites where the species had been recorded previously to determine whether recent extinctions were primarily due to climate or habitat changes. Coenonympha tullia had become extinct at 52% of study sites and all losses were associated with habitat degradation. Aricia artaxerxes was extinct from 50% of sites, with approximately one‐third to half of extinctions associated with climate‐related factors and the remainder with habitat loss. For Erebia aethiops (extinct from 24% of sites), approximately a quarter of the extinctions were associated with habitat and three‐quarters with climate. For Erebia epiphron, extinctions (37% of sites) were attributed mainly to climate with almost no habitat effects. For the three species affected by climate, range boundaries retracted 70–100 km northwards (A. artaxerxes, E. aethiops) and 130–150 m uphill (E. epiphron) in the sample of sites analysed. These shifts are consistent with estimated latitudinal and elevational temperature shifts of 88 km northwards and 98 m uphill over the 19‐year study period. These results suggest that the southern/warm range margins of some species are as sensitive to climate change as are northern/cool margins. Our data indicate that climate warming has been of comparable importance to habitat loss in driving local extinctions of northern species over the past few decades; future climate warming is likely to jeopardize the long‐term survival of many northern and mountain species.     

The loss of indirect interactions leads to cascading extinctions of carnivores

Species extinctions are biased towards higher trophic levels, and primary extinctions are often followed by unexpected secondary extinctions. Currently, predictions on the vulnerability of ecological communities to extinction cascades are based on models that focus on bottom‐up effects, which cannot capture the effects of extinctions at higher trophic levels. We show, in experimental insect communities, that harvesting of single carnivorous parasitoid species led to a significant increase in extinction rate of other parasitoid species, separated by four trophic links. Harvesting resulted in the release of prey from top‐down control, leading to increased interspecific competition at the herbivore trophic level. This resulted in increased extinction rates of non‐harvested parasitoid species when their host had become rare relative to other herbivores. The results demonstrate a mechanism for horizontal extinction cascades, and illustrate that altering the relationship between a predator and its prey can cause wide‐ranging ripple effects through ecosystems, including unexpected extinctions.     

Functional links and robustness in food webs

The robustness of ecosystems to species losses is a central question in ecology, given the current pace of extinctions and the many species threatened by human impacts, including habitat destruction and climate change. Robustness from the perspective of secondary extinctions has been addressed in the context of food webs to consider the complex network of species interactions that underlie responses to perturbations. In-silico removal experiments have examined the structural properties of food webs that enhance or hamper the robustness of ecosystems to species losses, with a focus on the role of hubs, the most connected species. Here we take a different approach and focus on the role of the connections themselves. We show that trophic links can be divided into functional and redundant based on their contribution to robustness. The analysis of empirical webs shows that hubs are not necessarily the most important species as they may hold many redundant links. Furthermore, the fraction of functional connections is high and constant across systems regardless of size and interconnectedness. The main consequence of this scaling pattern is that ecosystem robustness can be considerably reduced by species extinctions even when these do not result in any secondary extinctions. This introduces the possibility of tipping points in the collapse of ecosystems.     

Climate‐driven shifts in the distribution of koala‐browse species from the Last Interglacial to the near future

The koala's Phascolarctos cinereus distribution is currently restricted to eastern and south‐eastern Australia. However, fossil records dating from 70 ± 4 ka (ka = 10³ yr) from south‐western Australia and the Nullarbor Plain are evidence of subpopulation extinctions in the southwest at least after the Last Interglacial (~128–116 ka). We hypothesize that koala sub‐population extinctions resulted from the eastward retraction of the koala's main browse species in response to unsuitable climatic conditions. We further posit a general reduction in the distribution of main koala‐browse trees in the near future in response climate change. We modelled 60 koala‐browse species and constructed a set of correlative species distribution models for five time periods: Last Interglacial (~128–116 ka), Last Glacial Maximum (~23–19 ka), Mid‐Holocene (~7–5 ka), present (interpolations of observed data, representative of 1960–1990), and 2070. We based our projections on five hindcasts and one forecast of climatic variables extracted from WorldClim based on two general circulation models (considering the most pessimistic scenario of high greenhouse‐gas emissions) and topsoil clay fraction. We used 17 dates of koala fossil specimens identified as reliable from 70 (± 4) to 535 (± 49) ka, with the last appearance of koalas at 70 ka in the southwest. The main simulated koala‐browse species were at their greatest modelled extent of suitability during the Last Glacial Maximum, with the greatest loss of koala habitat occurring between the Mid‐Holocene and the present. We predict a similar habitat loss between the present and 2070. The spatial patterns of habitat change support our hypothesis that koala extinctions in the southwest, Nullarbor Plain and central South Australia resulted from the eastward retraction of the dominant koala‐browse species in response to long‐term climate changes. Future climate patterns will likely increase the extinction risk of koalas in their remaining eastern ranges.     

Cascading extinctions and community collapse in model food webs

Species loss in ecosystems can lead to secondary extinctions as a result of consumer–resource relationships and other species interactions. We compare levels of secondary extinctions in communities generated by four structural food-web models and a fifth null model in response to sequential primary species removals. We focus on various aspects of food-web structural integrity including robustness, community collapse and threshold periods, and how these features relate to assumptions underlying different models, different species loss sequences and simple measures of diversity and complexity. Hierarchical feeding, a fundamental characteristic of food-web structure, appears to impose a cost in terms of robustness and other aspects of structural integrity. However, exponential-type link distributions, also characteristic of more realistic models, generally confer greater structural robustness than the less skewed link distributions of less realistic models. In most cases for the more realistic models, increased robustness and decreased levels of web collapse are associated with increased diversity, measured as species richness S, and increased complexity, measured as connectance C. These and other results, including a surprising sensitivity of more realistic model food webs to loss of species with few links to other species, are compared with prior work based on empirical food-web data.     

The influence of local extinctions on the probability of fixation of chromosomal rearrangements

We investigated the influence of local extinctions in a subdivided population on the probability of fixation of an initially rare allele, for different migration rates. The selective regimes considered were strict underdominance, meiotic drive, and underdominance associated with meiotic drive. We show that local extinctions can increase the probability of fixation of initially rare alleles in underdominant loci for relatively high migration rates, even when both homozygotes have the same fitness. This increase is due to drift during founder events. On the contrary, local extinctions decrease the probability of fixation of alleles favoured by meiotic drive. For a locus where both meiotic drive and underdominance act, the effect of local extinctions depends on the relative strength of the two selective regimes and the initial frequency of the rare allele. For parameter values such that the rare allele is initially selected against, local extinctions decrease the probability of fixation for low migration rates while they cause an increase for moderate migration rates. When the parameter values are such that the rare allele should always be favoured by selection, local extinctions always decrease the probability of fixation. In this latter case, we show the existence of an optimal migration rate which maximizes the probability of fixation.