<Emphasis Type="Italic">OsMADS22</Emphasis>, an <Emphasis Type="Italic">STMADS11</Emphasis>-like MADS-box gene of rice,is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy

We report the cDNA sequence and gene expression patterns of OsMADS22, a novel member of the STMADS11-like family of MADS-box genes, from rice. In contrast to previously reported STMADS11-like genes, whose expression is detected in vegetative tissues, OsMADS22 is mainly expressed during embryogenesis and flower development. In situ hybridization analysis revealed that OsMADS22 expression is localized in the L1 layer of embryos and in developing stamen primordia. Ectopic expression of OsMADS22 in transgenic rice plants resulted in aberrant floral morphogenesis, characterized by a disorganized palea, an elongated glume, and a two-floret spikelet. The results are discussed in terms of rice spikelet development and a novel non-vegetative role for a STMADS11-like gene.     

水稻内颖畸形或缺失基因OsAPP1的图位克隆及表达分析

在育种基地材料中发现一株内颖畸形或缺失(abnormal or absent palea)突变体,将其命名为app1。该突变体在营养生长时期发育正常,但抽穗后突变体表现出内颖畸形(比外稃短导致颖壳不闭合,或者出现两个内稃)或缺失,其花粉育性为55.52%,结实率为6.48%,千粒重为10.811 g,种子发芽率为55.21%。以突变体app1与日本晴杂交构建了F1和F2群体,F1颖壳表型正常,F2群体出现内颖畸形和正常表型分离,内颖正常和突变表型分离比例为3∶1,表明app1内颖突变表型由单隐性核基因控制。以F2为分离群体,将app1精细定位于第3染色体上,位于分子标记ID4231和ID4246之间,遗传距离1.3 cM,对应物理距离为13.2 kb。该区段内完全包含1个开放阅读框,包含两个部分开放阅读框,经过测序分析发现候选基因LOC_Os03g11614启动子区发生点突变和245 bp缺失,qRT-PCR分析证实LOC_Os03g11614为OsAPP1基因。已有报道LOC_Os03g11614编码OsMADS1,是调控水稻花器官发育的重要明星基因,其不同位置的突变可以导致叶状颖壳和不育、以及控制籽粒大小。与3000份水稻种子资源SNP/Indel变异类型对比分析发现,突变体app1启动子的突变完全不同于现已OsMADS1研究报道突变类型,且与数据库中的自然突变类型多数不同。因此,本研究发现的app1突变体,是以往报道中从未出现的OsMADS1启动子发生突变的新型突变,且该类突变导致了其降低表达量,并产生了不同于前人研究的新表型,这为深入研究OsMADS1基因在水稻花器官发育中的功能提供了新的种质资源和思路。     

MULTI-FLORET SPIKELET1, Which Encodes an AP2/ERF Protein,Determines Spikelet Meristem Fate and Sterile Lemma Identity in Rice

The spikelet is a unique inflorescence structure of grass. The molecular mechanism that controls the development of the spikelet remains unclear. In this study, we identified a rice (Oryza sativa) spikelet mutant, multi-floret spikelet1 (mfs1), that showed delayed transformation of spikelet meristems to floral meristems, which resulted in an extra hull-like organ and an elongated rachilla. In addition, the sterile lemma was homeotically converted to the rudimentary glume and the body of the palea was degenerated in mfs1. These results suggest that the MULTI-FLORET SPIKELET1 (MFS1) gene plays an important role in the regulation of spikelet meristem determinacy and floral organ identity. MFS1 belongs to an unknown function clade in the APETALA2/ethylene-responsive factor (AP2/ERF) family. The MFS1-green fluorescent protein fusion protein is localized in the nucleus. MFS1 messenger RNA is expressed in various tissues, especially in the spikelet and floral meristems. Furthermore, our findings suggest that MFS1 positively regulates the expression of LONG STERILE LEMMA and the INDETERMINATE SPIKELET1 (IDS1)-like genes SUPERNUMERARY BRACT and OsIDS1.In the reproductive phase of angiosperms, the shoot meristem is transformed into an inflorescence meristem, which then produces a floral meristem from which floral organs begin to develop, according to the mechanism known as the ABCDE model (Coen and Meyerowitz, 1991; Coen and Nugent, 1994; Dreni et al., 2007; Ohmori et al., 2009). An inflorescence can be classified as determinate or indeterminate based on whether its apical meristem is transformed into a terminal floral meristem. In an indeterminate inflorescence, the lateral meristem is permanently differentiated from the apical meristem, which is not converted into the terminal floral meristem, as occurs during the development of the inflorescences of Arabidopsis (Arabidopsis thaliana) and snapdragon (Antirrhinum majus). In contrast, in a determinate inflorescence, the apical meristem is transformed into the terminal floral meristem after the production of a fixed number of lateral meristems, as occurs during the development of the inflorescences of tobacco (Nicotiana tabacum) and tomato (Solanum lycopersicum; Bradley et al., 1997; Ratcliffe et al., 1999; Sussex and Kerk, 2001; Chuck et al., 2008).In general, inflorescences in grasses consist of branches and spikelets (Coen and Nugent, 1994; Itoh et al., 2005; Kobayashi et al., 2010). In these organisms, the branch meristem is determinate. It produces several lateral spikelet meristems, followed by the final production of a terminal spikelet meristem. The spikelet, the specific unit of the grass inflorescence, comprises a pair of bracts and one to 40 florets; it shows determinacy or indeterminacy depending on the species (Clifford, 1987; Malcomber et al., 2006). In species with a determinate spikelet, such as rice (Oryza sativa), after the production of fixed lateral floral meristems, the spikelet meristems are converted into terminal floral meristems, resulting in termination of the spikelet meristem fate. In contrast, in species with an indeterminate spikelet, such as wheat (Triticum aestivum), the spikelet meristem fate is maintained continuously and produces a variable number of lateral floral meristems.In Arabidopsis, the gene TERMINAL FLOWER1 (TFL1) was shown to maintain indeterminacy in the fate of the inflorescence. In the tfl1 mutant, the inflorescence meristems were converted into floral meristems earlier than in the wild type, but the ectopic expression of TFL1 resulted in the transformation of floral meristems at a later stage of development to secondary inflorescence meristems (Bradley et al., 1997; Ratcliffe et al., 1999; Mimida et al., 2001). In rice, overexpression of either of the TFL1-like genes, RICE CENTRORADIALIS1 (RCN1) or RCN2, delayed the transition of branch meristems to spikelet meristems and finally resulted in the production of a greater number of branches and spikelets than in the wild type (Nakagawa et al., 2002; Rao et al., 2008).To date, no gene that acts to maintain the indeterminacy of the spikelet meristem has been reported. However, two classes of genes have been shown to be involved in termination of the indeterminacy of spikelet meristems. One of these is the group of terminal floral meristem identity genes. A grass-specific LEAFY HULL STERILE1 (LHS1) clade in the SEPALLATA (SEP) subfamily belongs to this class. LHS1-like genes were found to be expressed only in the terminal floral meristem in species with spikelet determinacy, which suggested that they exclusively determine the production of the terminal floral meristem, by which the spikelet meristem acquires determinacy (Cacharroón et al., 1999; Malcomber and Kellogg, 2004; Zahn et al., 2005). The other class comprises the INDETERMINATE SPIKELET1 (IDS1)-like genes, which belong to the APETALA2/ethylene-responsive factor (AP2/ERF) family. Unlike LHS1-like genes, this class of genes regulates the correct timing of the transition of the spikelet meristem to the floral meristem but does not specify the identity of the terminal floral meristem. In maize (Zea mays), loss of IDS1 function produces extra florets (Chuck et al., 1998). In addition, mutation of SISTER OF IDS1 (SID1), a paralog of IDS1 in maize, resulted in no defects in terms of spikelet development. However, the ids1+sid1 double mutant failed to generate floral organs and instead developed more bract-like structures than are found in wild-type plants (Chuck et al., 2008). The rice genome contains two IDS1-like genes, SUPERNUMERARY BRACT (SNB) and OsIDS1. Loss of activity of SNB or OsIDS1 produced extra rudimentary glumes, and snb+osids1 double mutant plants developed more rudimentary glumes than either of its parental mutants (Lee et al., 2007; Lee and An, 2012). These results revealed that the mutated IDS1-like genes prolonged the activity of the spikelet meristem.In most members of Oryzeae, the spikelet is distinct from those of other grasses, in that it comprises a pair of rudimentary glumes, a pair of sterile lemmas (empty glumes), and one floret (Schmidt and Ambrose, 1998; Ambrose et al., 2000; Kellogg, 2009; Hong et al., 2010). The rudimentary glumes are generally regarded as severely reduced bract organs, but the origin of sterile lemmas has been widely debated. Recent studies suggested that the sterile lemmas are the vestigial lemmas of two lateral florets. The gene LONG STERILE LEMMA (G1)/ELONGATED EMPTY GLUME1 (ELE1) is a member of a plant-specific gene family. In the g1/ele1 mutant, sterile lemmas were found to be homeotically transformed into lemmas (Yoshida et al., 2009; Hong et al., 2010). The OsMADS34 and EXTRA GLUME1 (EG1) genes were also shown to determine the identities of sterile lemmas. In the osmads34 and eg1 mutants, the sterile lemmas were enlarged and acquired the identities of lemmas (Li et al., 2009; Gao et al., 2010; Kobayashi et al., 2010). Additionally, the SEP-like gene LHS1/OsMADS1, which specifies the identities of both the lemma and the palea, was not expressed in sterile lemmas, and ectopic expression in sterile lemmas resulted in the transformation of sterile lemmas to lemmas (Jeon et al., 2000; Li et al., 2009; Tanaka et al., 2012). These findings suggest that the sterile lemma may be homologous to the lemma. Nevertheless, some researchers still considered that the sterile lemmas are instead vestigial bract-like structures similar to the rudimentary glumes (Schmidt and Ambrose, 1998; Kellogg, 2009; Hong et al., 2010).In this study, we isolated the rice MULTI-FLORET SPIKELET1 (MFS1) gene, which belongs to a clade of unknown function in the AP2/ERF gene family. The mutation of MFS1 was shown to delay the transformation of the spikelet meristem to the floral meristem and to result in degeneration of the sterile lemma and palea. These results suggest that MFS1 plays an important role in the regulation of spikelet determinacy and organ identity. Our findings also reveal that MFS1 positively regulates the expression of G1 and the IDS1-like genes SNB and OsIDS1.     

Dwarf and deformed flower 1, encoding an F‐box protein,is critical for vegetative and floral development in rice (Oryza sativa L.)

Recent studies have shown that F‐box proteins constitute a large family in eukaryotes, and play pivotal roles in regulating various developmental processes in plants. However, their functions in monocots are still obscure. In this study, we characterized a recessive mutant dwarf and deformed flower 1‐1 (ddf1‐1) in Oryza sativa (rice). The mutant is abnormal in both vegetative and reproductive development, with significant size reduction in all organs except the spikelet. DDF1 controls organ size by regulating both cell division and cell expansion. In the ddf1‐1 spikelet, the specification of floral organs in whorls 2 and 3 is altered, with most lodicules and stamens being transformed into glume‐like organs and pistil‐like organs, respectively, but the specification of lemma/palea and pistil in whorls 1 and 4 is not affected. DDF1 encodes an F‐box protein anchored in the nucleolus, and is expressed in almost all vegetative and reproductive tissues. Consistent with the mutant floral phenotype, DDF1 positively regulates B‐class genes OsMADS4 and OsMADS16, and negatively regulates pistil specification gene DL. In addition, DDF1 also negatively regulates the Arabidopsis LFY ortholog APO2, implying a functional connection between DDF1 and APO2. Collectively, these results revealed that DDF1, as a newly identified F‐box gene, is a crucial genetic factor with pleiotropic functions for both vegetative growth and floral organ specification in rice. These findings provide additional insights into the molecular mechanism controlling monocot vegetative and reproductive development.     

Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress

High temperature significantly alters the amylose content of rice, resulting in mature grains with poor eating quality. However, only few genes and/or quantitative trait loci involved in this process have been isolated and the molecular mechanisms of this effect remain unclear. Here, we describe a floral organ identity gene, OsMADS7, involved in stabilizing rice amylose content at high temperature. OsMADS7 is greatly induced by high temperature at the early filling stage. Constitutive suppression of OsMADS7 stabilizes amylose content under high temperature stress but results in low spikelet fertility. However, rice plants with both stable amylose content at high temperature and normal spikelet fertility can be obtained by specifically suppressing OsMADS7 in endosperm. GBSSI is the major enzyme responsible for amylose biosynthesis. A low filling rate and high expression of GBSSI were detected in OsMADS7 RNAi plants at high temperature, which may be correlated with stabilized amylose content in these transgenic seeds under high temperature. Thus, specific suppression of OsMADS7 in endosperm could improve the stability of rice amylose content at high temperature, and such transgenic materials may be a valuable genetic resource for breeding rice with elite thermal resilience.     

Expression study of five genes involved in floral organ development in multiple seeded rice

Rice cultivar Jugal is a unique floral organ mutant from South Bengal and Odisa, the two sister states of Eastern India, carries more than one kernels in most of its spikelet. Most of the mature florets of this line possess more than one carpal which later developed into more than one kernels within a single grain on maturity. In order to study the role of floral organ development genes commonly involved, expression study of five selected floral organ developmental genes (OsMADS3, OsMADS13, OsMADS21, OsMADS58, and DL) were studied through real time based quantitative PCR for three consecutive flower organ developmental stages (Sp5, Sp6, and Sp7) with reference to a normal rice line (IR36). All the studied genes showed differential relative expression in respect to the reference gene both in mutant and normal rice lines for the studied genes and stages and individual distinct pattern except DL gene which was almost similar in both Jugal and IR36 at early stage of floral organ development viz Sp5 and Sp6 stage. However, after Sp6 stage the expression is reduced in the normal rice (IR36) but in case of the mutant rice (Jugal) the expression started to increase and at Sp7 the expression level was much higher in the mutant line. The information resulted from the investigation form the basic idea on regulatory aspects of floral organ development in rice.     

Rice ternary MADS protein complexes containing class B MADS heterodimer

To investigate ternary MADS protein complexes involved in the regulation of floral organ development in rice, we identified MADS proteins interacting with the class B MADS heterodimers, OsMADS16-OsMADS4 and OsMADS16-OsMADS2, using yeast three-hybrid assay. The class B heterodimers interacted with OsMADS6, 7, 8, 14 and 17, which belong to AP1-like, SEP-like or AGL6-like MADS proteins, generating ternary complexes. The entire region of the K and C domains of OsMADS4 was required for the formation of the OsMADS16-OsMADS4-OsMADS6 and OsMADS16-OsMADS4-OsMADS7 ternary complexes. Analysis results of transgenic plants concomitantly suppressing OsMADS4 and OsMADS6, together with the results of previous studies, suggest that the OsMADS16-OsMADS4-OsMADS6 ternary complex plays an important role in floral development, especially lodicule development.     

Tissue-specifically regulated site-specific excision of selectable marker genes in bivalent insecticidal, genetically-modified rice

Marker-free, genetically-modified rice was created by the tissue-specifically regulated Cre/loxP system, in which the Cre recombinase gene and hygromycin phosphotransferase gene (hpt) were flanked by two directly oriented loxP sites. Cre expression was activated by the tissue-specific promoter OsMADS45 in flower or napin in seed, resulting in simultaneous excision of the recombinase and marker genes. Segregation of T₁ progeny was performed to select recombined plants. The excision was confirmed by PCR, Southern blot and sequence analyses indicating that efficiency varied from 10 to 53 % for OsMADS45 and from 12 to 36 % for napin. The expression of cry1Ac and vip3A was detected by RT-PCR analysis in marker-free transgenic rice. These results suggested that our tissue-specifically regulated Cre/loxP system could auto-excise marker genes from transgenic rice and alleviate public concerns about the security of GM crops.     

The wheat AGL6-like MADS-box gene is a master regulator for floral organ identity and a target for spikelet meristem development manipulation

The AGAMOUS-LIKE6 (AGL6)-like genes are ancient MADS-box genes and are functionally studied in a few model plants. The knowledge of these genes in wheat remains limited. Here, by studying a ‘double homoeolog mutant’ of the AGL6 gene in tetraploid wheat, we showed that AGL6 was required for the development of all four whorls of floral organs with dosage-dependent effect on floret fertility. Yeast two-hybrid analyses detected interactions of AGL6 with all classes of MADS-box proteins in the ABCDE model for floral organ development. AGL6 was found to interact with several additional proteins, including the G protein β and γ (DEP1) subunits. Analysis of the DEP1-B mutant showed a significant reduction in spikelet number per spike in tetraploid wheat, while overexpression of AGL6 in common wheat increased the spikelet number per spike and hence the grain number per spike. RNA-seq analysis identified the regulation of several meristem activity genes by AGL6, such as FUL2 and TaMADS55. Our work therefore extensively updated the wheat ABCDE model and proposed an alternative approach to improve wheat grain yield by manipulating the AGL6 gene.