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1.
Seasonal variability in biogeochemical signatures was used to elucidate the dominant pathways of soil microbial metabolism and elemental cycling in an oligotrophic mangrove system. Three interior dwarf mangrove habitats (Twin Cays, Belize) where surface soils were overlain by microbial mats were sampled during wet and dry periods of the year. Porewater equilibration meters and standard biogeochemical methods provided steady-state porewater profiles of pH, chloride, sulfate, sulfide, ammonium, nitrate/nitrite, phosphate, dissolved organic carbon, nitrogen, and phosphorus, reduced iron and manganese, dissolved inorganic carbon, methane and nitrous oxide. During the wet season, the salinity of overlying pond water and shallow porewaters decreased. Increased rainwater infiltration through soils combined with higher tidal heights appeared to result in increased organic carbon inventories and more reducing soil porewaters. During the dry season, evaporation increased both surface water and porewater salinities, while lower tidal heights resulted in less reduced soil porewaters. Rainfall strongly influenced inventories of dissolved organic carbon and nitrogen, possibly due to more rapid decay of mangrove litter during the wet season. During both times of year, high concentrations of reduced metabolites accumulated at depth, indicating substantial rates of organic matter mineralization coupled primarily to sulfate reduction. Nitrous oxide and methane concentrations were supersaturated indicating considerable rates of nitrification and/or incomplete denitrification and methanogenesis, respectively. More reducing soil conditions during the wet season promoted the production of reduced manganese. Contemporaneous activity of sulfate reduction and methanogenesis was likely fueled by the presence of noncompetitive substrates. The findings indicate that these interior dwarf areas are unique sites of nutrient and energy regeneration and may be critical to the overall persistence and productivity of mangrove-dominated islands in oligotrophic settings.  相似文献   

2.
Increasing demands of groundwater in petroleum-recovering regions could elevate the level and mobility of arsenic in groundwater as a result of the enhanced dissolution of arsenic-bearing iron or manganese oxide due to the accelerated sulfate reduction by microorganisms in a reductive environment. To substantiate this possibility, groundwater samples were collected from 220 water wells in the nearby petroleum wells in Kuitun. Dissolved arsenic, iron, manganese, and sulfate levels and pH in groundwater samples were analyzed. The dissolved arsenic levels in groundwater varied from <2.3 to 789.4 μg·L?1, in which approximately 96.4% of the measured values exceeded the allowed limits of the World Health Organization. An inverse relation existed between dissolved arsenic and sulfate levels. Most of the high arsenic-level samples (>300 μg·L?1) were found in wells at close proximity to petroleum wells where a high iron or manganese level was also detected. The oil-exploring activity in the study region seemed to have enhanced the microbial reduction of sulfate in underground environment and hence the level of arsenic in groundwater. The microbial sulfate reduction coupled with the reduction of arsenic-bearing iron oxides in the groundwater environment may explain the spatial heterogeneity of the arsenic level in groundwater.  相似文献   

3.
Permanently cold marine sediments are heavily influenced by increased input of iron as a result of accelerated glacial melt, weathering, and erosion. The impact of such environmental changes on microbial communities in coastal sediments is poorly understood. We investigated geochemical parameters that shape microbial community compositions in anoxic surface sediments of four geochemically differing sites (Annenkov Trough, Church Trough, Cumberland Bay, Drygalski Trough) around South Georgia, Southern Ocean. Sulfate reduction prevails in Church Trough and iron reduction at the other sites, correlating with differing local microbial communities. Within the order Desulfuromonadales, the family Sva1033, not previously recognized for being capable of dissimilatory iron reduction, was detected at rather high relative abundances (up to 5%) while other members of Desulfuromonadales were less abundant (<0.6%). We propose that Sva1033 is capable of performing dissimilatory iron reduction in sediment incubations based on RNA stable isotope probing. Sulfate reducers, who maintain a high relative abundance of up to 30% of bacterial 16S rRNA genes at the iron reduction sites, were also active during iron reduction in the incubations. Thus, concurrent sulfate reduction is possibly masked by cryptic sulfur cycling, i.e., reoxidation or precipitation of produced sulfide at a small or undetectable pool size. Our results show the importance of iron and sulfate reduction, indicated by ferrous iron and sulfide, as processes that shape microbial communities and provide evidence for one of Sva1033’s metabolic capabilities in permanently cold marine sediments.Subject terms: Microbial ecology, Biogeochemistry  相似文献   

4.
In many marine surface sediments, the reduction of manganese (Mn) and iron (Fe) oxides is obscured by sulfate reduction, which is regarded as the predominant anaerobic microbial respiration process. However, many dissimilatory sulfate and sulfur reducing microorganisms are known to utilize alternative electron acceptors such as metal oxides. In this study, we tested whether sulfate and sulfur reducing bacteria are linked to metal oxide reduction based on biogeochemical modeling of porewater concentration profiles of Mn2+ and Fe2+ in Bothnian Bay (BB) and Skagerrak (SK) sediments. Steady-state modeling of Fe2+ and Mn2+ porewater profiles revealed zones of net Fe (0–9 cm BB; ~10 and 20 cm SK) and Mn (0–5 cm BB; 2–8 cm SK) species transformations. 16S rRNA pyrosequencing analysis of the in-situ community showed that Desulfobacteraceae, Desulfuromonadaceae and Desulfobulbaceae were present in the zone of Fe-reduction of both sediments. Rhodobacteraceae were also detected at high relative abundance in both sediments. BB sediments appeared to harbor a greater diversity of potential Fe-reducers compared to SK. Additionally, when the upper 10 cm of sediment from the SK was incubated with lepidocrocite and acetate, Desulfuromonas was the dominant bacteria. Real-time quantitative polymerase chain reaction (qPCR) results showed decreasing dsrA gene copy numbers with depth coincided with decreased Fe-reduction activity. Our results support the idea that sulfur and sulfate reducing bacteria contribute to Fe-reduction in the upper centimeters of both sediments.  相似文献   

5.
A novel method was used to examine the microbial ecology of iron-rich wetland sediments receiving neutral-pH coal mine drainage. Gel probes inserted into the sediments allowed analysis of the distribution and activity of bacterial sulfate reduction (BSR). A mixed population of sulfate-reducing bacteria enriched from anoxic wetland sediments was immobilized in low temperature-gelling agarose held in grooved rods or probes. The probes were inserted vertically into sediments and were allowed to incubate in situ for 48 h. After their retrieval, the gels were sectioned and analyzed for residual BSR activity and were compared to in situ BSR rates and chemical porewater profiles. The depth distribution of residual BSR activity in the immobilized cell gel probes differed significantly from the BSR measured in situ. Approximately 51% of the total integrated residual sulfate reduction activity measured in the gel probes occurred between 0 and 7 cm of the upper 20 cm of sediment. In contrast, ca. 99% of the integrated in situ BSR occurred between 7- and 20-cm depth, and only 1% of the total integrated rate occurred between 0- and 7-cm depth. Lactate-enriched bacteria immobilized in the gel may have been atypical of the majority of sulfate-reducing bacteria in the sediment. Agarose-immobilized sulfate-reducing bacteria might also be able to proliferate in the otherwise inhospitable zone of iron reduction, where sulfate and labile carbon compounds for which they are usually outcompeted can diffuse freely into the gel matrix. Gel probes containing particulate iron monosulfide (FeS) indicated that FeS remained stable in sediments at depths greater than 2 to 3 cm below the sediment-water interface, consistent with the shallow penetration of oxygen into surface sediments.  相似文献   

6.
Challenger Mound, a 150‐m‐high cold‐water coral mound on the eastern flank of the Porcupine Seabight off SW Ireland, was drilled during Expedition 307 of the Integrated Ocean Drilling Program (IODP). Retrieved cores offer unique insight into an archive of Quaternary paleo‐environmental change, long‐term coral mound development, and the diagenetic alteration of these carbonate fabrics over time. To characterize biogeochemical carbon–iron–sulfur transformations in the mound sediments, the contents of dithionite‐ and HCl‐extractable iron phases, iron monosulfide and pyrite, and acid‐extractable calcium, magnesium, manganese, and strontium were determined. Additionally, the stable isotopic compositions of pore‐water sulfate and solid‐phase reduced sulfur compounds were analyzed. Sulfate penetrated through the mound sequence and into the underlying Miocene sediments, where a sulfate–methane transition zone was identified. Small sulfate concentration decreases (<7 mm ) within the top 40 m of the mound suggested slow net rates of present‐day organoclastic sulfate reduction. Increasing δ34S‐sulfate values due to microbial sulfate reduction mirrored the decrease in sulfate concentrations. This process was accompanied by oxygen isotope exchange with water that was indicated by increasing δ18O‐sulfate values, reaching equilibrium with pore‐water at depth. Below 50 mbsf, sediment intervals with strong 34S‐enriched imprints on chromium‐reducible sulfur (pyrite S), high degree‐of‐pyritization values, and semi‐lithified diagenetic carbonate‐rich layers characterized by poor coral preservation, were observed. These layers provided evidence for the occurrence of enhanced microbial sulfate‐reducing activity in the mound in the past during periods of rapid mound aggradation and subsequent intervals of non‐deposition or erosion when geochemical fronts remained stationary. During these periods, especially during the Early Pleistocene, elevated sulfate reduction rates facilitated the consumption of reducible iron oxide phases, coral dissolution, and the subsequent formation of carbonate cements.  相似文献   

7.
Release of phosphorus from sediments in Lake Biwa   总被引:16,自引:0,他引:16  
Two sulfur-mediated reactions are resulting in the eutrophication of Lake Biwa, Japan. The iron (II) phosphate mineral vivianite is dissolving in sulfide-enriched sediments that in places results in porewater concentrations of phosphate exceeding 3 mg l−1. The dissolution of phosphate is evident in profiles of total phosphorus where zones of dissolution and a zone of precipitation in the most oxic surface sediments are visible. At times sulfate reduction in these surface sediments results in pH values as high as 9.9, which can dissolve phosphate adsorbed to iron (III). This release of phosphorus from sediments is at least partially responsible for the recent appearance of blue-green algal blooms. Received: August 4, 2000 / Accepted: March 19, 2001  相似文献   

8.
Microbes may play a key role in the mobilization of arsenic present in elevated concentrations within the aquifers extensively exploited for irrigation and drinking water in West Bengal, Bangladesh, and in other regions of South-East Asia. Microcosm experiments using Cambodian sediments (which are also representative of other similar reducing aquifers containing arsenic-rich waters) show that arsenic release and iron reduction are microbially mediated and demonstrate that the type of organic matter present, not necessarily the total abundance of organic matter, is important in controlling the rate and magnitude of microbially mediated arsenic release from these aquifer sediments. The possible role of naturally occurring petroleum in stimulating this process is also demonstrated. In addition to acting as an electron donor, certain types of organic matter may accelerate arsenic release by acting as an electron shuttle, indicating a dual role for organic matter in the process. The results also suggest that the fine-grained sediment regions of these aquifers are particularly vulnerable to accelerated arsenic release following the introduction of labile organic carbon.  相似文献   

9.
The Great Ouse estuary in southern England is a macrotidal estuary with rather coarse sediment. Two intertidal sites were sampled five times over the year at low tide. The sediments are suboxic, organic poor (approximately 1.5% organic carbon). They are composed mainly of detrital quartz and feldspar with some calcite. At both sites the total phosphorus in the sediments ranges from 0.03 – 0.12% dry weight and total iron from 0.42–1.22% dry weight. Of the total phosphorus 20% is organic and 80% is inorganic of which 10% is water extractable. Total iron and phosphorus correlate well and the ratio of iron:phosphorus is 8.4 which is similar to that found when phosphorus is adsorbed by iron oxyhydroxides, suggesting that iron oxyhydroxides are an important substrate for phosphorus sorption in these sediments. Fluxes of phosphorus from the sediment to the overlying water, measured in cores incubated in the laboratory, are low and show no seasonality. The sodium concentration in the porewaters at both sites is variable suggesting that there is movement of water through the sediment to depths of at least 20 cm. This is borne out by variable phosphorus, iron and phosphorus concentrations in the porewaters and ill defined redox zones in the sediments.  相似文献   

10.
Davison  W. 《Hydrobiologia》1982,91(1):463-471
A model is presented which describes the transport of iron and manganese in the vicinity of a redox boundary. It is based on input of a particulate component, to form a point source, from which soluble species diffuse along a concentration gradient. The shapes of concentration-depth profiles in marine and freshwater sediments and water columns are reviewed and discussed in terms of the model. Transport, either entirely within a water column or within the sediment, may be simply treated because the rate of vertical transport can be regarded as constant. The discontinuity in the rate of vertical transport which occurs at the sediment-water interface can provide a complicated example of the model, especially when it coincides with the redox boundary. Authigenic mineral formation processes can modify the model, sometimes to such an extent that it becomes invalid. This is particularly true for soluble iron profiles in organically rich marine sediments. Sampling interval is critical to the resultant profile shape and must be relevant to the particular environment, e.g. metres in water columns and millimetres in sediments. The differences in the rates of reduction and oxidation of iron and manganese tend to modify both the position of the profile with respect to the redox-cline and its stage of development in a seasonally anoxic system. It is these factors which determine why most of the iron which reaches a sediment is permanently incorporated whereas manganese is re-released. This mechanism determines the average ratio of iron to manganese in sedimentary rocks. The development of peaked profile shapes in water columns implies that under certain conditions dissolved iron and manganese may be transported from the water column to the pore waters of the sediment.  相似文献   

11.
Subseafloor sulfate concentrations typically decrease with depth as this electron acceptor is consumed by respiring microorganisms. However, studies show that seawater can flow through hydraulically conductive basalt to deliver sulfate upwards into deeply buried overlying sediments. Our previous work on IODP Site C0012A (Nankai Trough, Japan) revealed that recirculation of sulfate through the subducting Philippine Sea Plate stimulated microbial activity near the sediment–basement interface (SBI). Here, we describe the microbial ecology, phylogeny, and energetic requirements of population of aero‐tolerant sulfate‐reducing bacteria in the deep subseafloor. We identified dissimilatory sulfite reductase gene (dsr) sequences 93% related to oxygen‐tolerant Desulfovibrionales species across all reaction zones while no SRB were detected in drilling fluid control samples. Pore fluid chemistry revealed low concentrations of methane (<0.25 mM), while hydrogen levels were consistent with active bacterial sulfate reduction (0.51–1.52 nM). Solid phase total organic carbon (TOC) was also considerably low in these subseafloor sediments. Our results reveal the phylogenetic diversity, potential function, and physiological tolerance of a community of sulfate‐reducing bacteria living at ~480 m below subducting seafloor.  相似文献   

12.
Abstract By adding sulfate in the form of solid gypsum, it was possible to transform in situ a predominantly methanogenic sediment ecosystem into a sulfate-reducing one. The concentrations of sulfate, sulfide, methane, acetate, propionate, soluble iron, and manganese were determined in the porewater before and after the transition. Although sulfate was no longer limiting, acetate and propionate continued to accumulate and reached much higher concentrations than under sulfate-limited conditions. Metabolic activities of fermenting bacteria and of sulfate reducers, which belong to the group that incompletely oxidizes organic material, might be responsible for the increased production of volatile fatty acids. The elevated concentrations of soluble Fe(II)2+ and Mn(II)2+ observed in the porewater stem from iron and manganese compounds which may be reduced chemically by hydrogen sulfide and other microbially produced reducing agents or directly through increased activities of the iron and manganese reducing bacteria. In the horizon with high sulfate-reducing activities the methane concentrations in the porewater were lower than in non-stimulated sediment regions. The shape of the concentration depth profile indicates methane consumption through sulfate reducing processes. The in situ experiment demonstrates the response of a natural microbial ecosystem to fluctuations in the environmental conditions.  相似文献   

13.
Porewater acid/base chemistry in near-shore regions of an acidic lake   总被引:1,自引:0,他引:1  
Sediment porewaters in the near-shore region (within 1 m of the shoreline) of an acidic lake (Dart's Lake) were monitored during the summer of 1983 to investigate whether spatial variations in porewater acid/base chemistry were significant in this region of the lake. Previous investigations of Dart's Lake porewaters have indicated that within deeper waters (>2m depth), sediment porewaters are elevated in alkalinity relative to overlying lake water. Within the near-shore region, porewaters both considerably more and less acidic than the lake water were observed. Both reduction of strong acid anions (SO4 2–, NO3 ) and the mobilization of base cations were significant mechanisms of alkalinity production in porewaters exhibiting reducing conditions. In sediments reflecting oxic conditions, porewaters were generally more acidic than the lakewater. Measurement of groundwater seepage into the lake at the near-shore sites indicated that oxic sites exhibited elevated inputs of groundwater when compared to sites where reducing conditions existed. The acidic porewaters associated with high groundwater flows suggests that groundwater inputs to the lake may be a source of acidity (not alkalinity) on a whole-lake basis.  相似文献   

14.
Biogeochemistry of manganese- and iron-rich sediments in Toolik Lake,Alaska   总被引:2,自引:2,他引:0  
The sediments within Toolik Lake in arctic Alaska are characterized by extremely low rates of organic matter sedimentation and unusually high concentrations of iron and manganese. Pore water and solid phase measurements of iron, manganese, trace metals, carbon, nitrogen, phosphorus, and sulfur are consistent with the hypothesis that the reduction of organic matter by iron and manganese is the most important biogeochemical reaction within the sediment. Very low rates of dissolved oxygen consumption by the sediments result in an oxidizing environment at the sediment-water interface. This results in high retention of upwardly-diffusing iron and manganese and the formation of metal-enriched sediment. Phosphate in sediment pore waters is strongly adsorbed by the metal-enriched phases. Consequently, fluxes of phosphorus from the sediments to overlying waters are very small and contribute to the oligotrophic nature of the Toolik Lake aquatic system. Toolik Lake contains an unusual type of lacustrine sediment, and in many ways the sediments are similar to those found in oligotrophic oceanic environments.  相似文献   

15.
The microbial conversion of petroleum hydrocarbons is increasingly employed in bioremediation efforts. In marine sediments, oxygen levels are characteristically depleted, so anaerobic degradation coupled to sulfate reduction dominates. Prior studies have noted that anaerobic degradation is much reduced in the absence of sediments. In this study, a simple centrifugation protocol was used to extract sediment porewaters to obtain a sediment-free bacterial assemblage capable of anaerobic hydrocarbon degradation. In addition, the factors in sediment that were important to degradation rates were determined. Experiments were designed to differentiate among the effects of increased surface area associated with individual grains in sediments, differing levels of organic constituents in sediments and water, and disparate microbiota within the sedimentary matrix and those free living. Anaerobic alkane degradation, sulfate levels and bacterial community structure were monitored over 90 days in five treatments consisting of Bonny Light crude oil added to (1) intact sediment, (2) sediment-free supernate from centrifuged sediment, (3) supernate plus autoclaved sediment, (4) supernate plus organic-free (combusted) sediment, and (5) a control, with autoclaved supernate plus autoclaved sediment. Lack of surface area associated with sediment grains had little effect on degradation. Separation of porewaters from the sedimentary matrix resulted in loss of bacterial biomass, although this had only a temporary negative effect on degradation rates. Reduction of organic matter due to sediment removal had the largest effect, resulting initially in lower degradation rates. However, sulfate depletion in low organic treatments was also reduced so that long-term loss of alkanes was enhanced.  相似文献   

16.
We investigated the composition of porewaters in intertidal sediments in response to the diurnal rise and fall of tides. For this reason, we deployed an in situ voltammetric system to measure vertical distribution and time-series at defined depths of O2, Mn(II), Fe(II), and S(?II) in the porewater of permeable sediments from a protected beach in the Arcachon Bay. We also report microprofiles of O2 and pH together with sediment properties (organic carbon, particulate reactive manganese and iron, porosity and permeability). Results shows that the oxygen dynamics in the upper sediment at low tide appeared to be mainly controlled by microphytobenthos activity, which may migrate downward just before immersion. The tidal forcing seemed to influence the oxygen dynamic in a minor way through flushing of the uppermost sediment porewater layer at the beginning and end of immersion. Vertical profiles and time-series measurements showed that the distributions of reduced species varied with tides. Although this work reveals that the upper sediment layer was subject to redox changes, the response of vertical distributions of redox species to tidal and night?Cday cycles did not have a cyclic pattern.  相似文献   

17.
Lake water, pore water, and sediments were sampled in a seasonally stratified lake affected by coal-mining drainage. Contrasting geochemical processes of iron and manganese in summer were investigated by studying the seasonal distributions of iron and manganese species in the water column, pore water, and sediments. The results show that iron buildup in the water during summer was mainly from the gradual dissolution of particulate matter due to the pH decrease, whereas manganese oxide reduction and manganese-bound carbonate dissolution near the sediment–water interface were mainly responsible for manganese accumulation in the stratified hypolimnion. The geochemical processes of iron and manganese in the sediments during early diagenesis were also discussed in terms of the possible influence on the overlying water. Received: November 29, 1999 / Accepted: June 30, 2000  相似文献   

18.
We have investigated the molecular phylogeny of cold-seep sediments obtained from the Nankai Trough, at depths of about 600, 2,000, and 3,300 m, and compared the microbial diversity profiles of those sediments samples. The gamma-Proteobacteria that might function as sulfide oxidizers and the symbiotically related delta-Proteobacteria which might function as sulfate reducers were identified amongst the bacteria from all depths of the sediments. However, anoxic methane oxidizing archaea (ANME) and methanogens were only found in the 600 m deep sediments. These results indicated that the cold-seep microbial sulfur circulation system could be functioning in the shallow seep sediment at a depth of 600 m and the microbial activities at these sites might be more dynamic than at other deeper cold-seep sites.  相似文献   

19.
Many reports have documented wetlands removing a wide variety of contaminants in mine drainage, including aluminum, arsenic, cadmium, cobalt, copper, cyanide, iron, lead, manganese, nickel, selenium, uranium, and zinc. This article reviews biogeochemical processes responsible for their ability to transform and retain metals into insoluble forms. Shallow depth and large inputs of organic matter are key characteristics of wetlands that promote chemical and biological processes effecting metal removal. Aquatic macrophytes play an essential role in creating and maintaining this environment, but their uptake of metals usually accounts for a minor proportion of the total mass removed. Sorption onto organic matter is important in metal removal, particularly for copper, nickel, and uranium. Aluminum, iron, and manganese are often removed by hydrolysis, with the resulting acidification of water buffered by alkalinity produced in wetland sediments by anaerobic bacteria. Bacterial sulfate reduction accounts for much of this alkalinity. It can also contribute significantly to metal removal by formation of insoluble sulfides. Other important processes include the formation of insoluble carbonates, reduction to nonmobile forms, and adsorption onto iron oxides and hydroxides. Examples from field studies are presented throughout the review to illustrate these processes.  相似文献   

20.
Mining-impacted sediments of Lake Coeur d'Alene, Idaho, contain more than 10% metals on a dry weight basis, approximately 80% of which is iron. Since iron (hydr)oxides adsorb toxic, ore-associated elements, such as arsenic, iron (hydr)oxide reduction may in part control the mobility and bioavailability of these elements. Geochemical and microbiological data were collected to examine the ecological role of dissimilatory Fe(III)-reducing bacteria in this habitat. The concentration of mild-acid-extractable Fe(II) increased with sediment depth up to 50 g kg(-1), suggesting that iron reduction has occurred recently. The maximum concentrations of dissolved Fe(II) in interstitial water (41 mg liter(-1)) occurred 10 to 15 cm beneath the sediment-water interface, suggesting that sulfidogenesis may not be the predominant terminal electron-accepting process in this environment and that dissolved Fe(II) arises from biological reductive dissolution of iron (hydr)oxides. The concentration of sedimentary magnetite (Fe(3)O(4)), a common product of bacterial Fe(III) hydroxide reduction, was as much as 15.5 g kg(-1). Most-probable-number enrichment cultures revealed that the mean density of Fe(III)-reducing bacteria was 8.3 x 10(5) cells g (dry weight) of sediment(-1). Two new strains of dissimilatory Fe(III)-reducing bacteria were isolated from surface sediments. Collectively, the results of this study support the hypothesis that dissimilatory reduction of iron has been and continues to be an important biogeochemical process in the environment examined.  相似文献   

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