Diversity, Composition, and Geographical Distribution of Microbial Communities in California Salt Marsh Sediments

The Pacific Estuarine Ecosystem Indicators Research Consortium seeks to develop bioindicators of toxicant-induced stress and bioavailability for wetland biota. Within this framework, the effects of environmental and pollutant variables on microbial communities were studied at different spatial scales over a 2-year period. Six salt marshes along the California coastline were characterized using phospholipid fatty acid (PLFA) analysis and terminal restriction fragment length polymorphism (TRFLP) analysis. Additionally, 27 metals, six currently used pesticides, total polychlorinated biphenyls and polycyclic aromatic hydrocarbons, chlordanes, nonachlors, dichlorodiphenyldichloroethane, and dichlorodiphenyldichloroethylene were analyzed. Sampling was performed over large (between salt marshes), medium (stations within a marsh), and small (different channel depths) spatial scales. Regression and ordination analysis suggested that the spatial variation in microbial communities exceeded the variation attributable to pollutants. PLFA analysis and TRFLP canonical correspondence analysis (CCA) explained 74 and 43% of the variation, respectively, and both methods attributed 34% of the variation to tidal cycles, marsh, year, and latitude. After accounting for spatial variation using partial CCA, we found that metals had a greater effect on microbial community composition than organic pollutants had. Organic carbon and nitrogen contents were positively correlated with PLFA biomass, whereas total metal concentrations were positively correlated with biomass and diversity. Higher concentrations of heavy metals were negatively correlated with branched PLFAs and positively correlated with methyl- and cyclo-substituted PLFAs. The strong relationships observed between pollutant concentrations and some of the microbial indicators indicated the potential for using microbial community analyses in assessments of the ecosystem health of salt marshes.     

Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments

The Pacific Estuarine Ecosystem Indicators Research Consortium seeks to develop bioindicators of toxicant-induced stress and bioavailability for wetland biota. Within this framework, the effects of environmental and pollutant variables on microbial communities were studied at different spatial scales over a 2-year period. Six salt marshes along the California coastline were characterized using phospholipid fatty acid (PLFA) analysis and terminal restriction fragment length polymorphism (TRFLP) analysis. Additionally, 27 metals, six currently used pesticides, total polychlorinated biphenyls and polycyclic aromatic hydrocarbons, chlordanes, nonachlors, dichlorodiphenyldichloroethane, and dichlorodiphenyldichloroethylene were analyzed. Sampling was performed over large (between salt marshes), medium (stations within a marsh), and small (different channel depths) spatial scales. Regression and ordination analysis suggested that the spatial variation in microbial communities exceeded the variation attributable to pollutants. PLFA analysis and TRFLP canonical correspondence analysis (CCA) explained 74 and 43% of the variation, respectively, and both methods attributed 34% of the variation to tidal cycles, marsh, year, and latitude. After accounting for spatial variation using partial CCA, we found that metals had a greater effect on microbial community composition than organic pollutants had. Organic carbon and nitrogen contents were positively correlated with PLFA biomass, whereas total metal concentrations were positively correlated with biomass and diversity. Higher concentrations of heavy metals were negatively correlated with branched PLFAs and positively correlated with methyl- and cyclo-substituted PLFAs. The strong relationships observed between pollutant concentrations and some of the microbial indicators indicated the potential for using microbial community analyses in assessments of the ecosystem health of salt marshes.     

Salt marsh stabilization affects algal primary producers at the marsh edge

As sea level rise and human activities erode coastal wetlands, managers rebuild or preserve wetlands that can perform the ecosystem services of a natural system. One increasingly common mitigation activity is the construction of rock sills in the low marsh zone to stabilize marsh elevation. Sills dramatically alter the physical structure of marshes by changing elevation, adding hard substrate and potentially altering the spatial structure of benthic algal communities in and adjacent to the low marsh. We documented differences in benthic algal abundance at the seaward marsh edge in silled and unsilled marshes in North Carolina. We found that sills were associated with reduced standing stocks of benthic algal primary production and reduced macroalgal taxonomic richness, and this difference was driven primarily by differences in macroalgal abundance. We experimentally tested the effect of macroalgal abundance on cordgrass (Spartina alterniflora) growth in the low zone of an unmanipulated marsh, and found that macroalgal removal had no effect on final cordgrass abundance. Our study suggests that salt marsh management through the construction of sills in low marsh zones impacts benthic primary production in the low marsh zone, but that benthic algal production does not affect cordgrass growth over a growing season.     

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill

Coastal salt marshes are highly sensitive wetland ecosystems that can sustain long-term impacts from anthropogenic events such as oil spills. In this study, we examined the microbial communities of a Gulf of Mexico coastal salt marsh during and after the influx of petroleum hydrocarbons following the Deepwater Horizon oil spill. Total hydrocarbon concentrations in salt marsh sediments were highest in June and July 2010 and decreased in September 2010. Coupled PhyloChip and GeoChip microarray analyses demonstrated that the microbial community structure and function of the extant salt marsh hydrocarbon-degrading microbial populations changed significantly during the study. The relative richness and abundance of phyla containing previously described hydrocarbon-degrading bacteria (Proteobacteria, Bacteroidetes, and Actinobacteria) increased in hydrocarbon-contaminated sediments and then decreased once hydrocarbons were below detection. Firmicutes, however, continued to increase in relative richness and abundance after hydrocarbon concentrations were below detection. Functional genes involved in hydrocarbon degradation were enriched in hydrocarbon-contaminated sediments then declined significantly (p<0.05) once hydrocarbon concentrations decreased. A greater decrease in hydrocarbon concentrations among marsh grass sediments compared to inlet sediments (lacking marsh grass) suggests that the marsh rhizosphere microbial communities could also be contributing to hydrocarbon degradation. The results of this study provide a comprehensive view of microbial community structural and functional dynamics within perturbed salt marsh ecosystems.     

Habitat selection of wintering passerines in salt marshes of the German Wadden Sea

The salt marshes of the Wadden Sea are important wintering areas for some species of granivorous passerines, which have declined considerably since the 1960s. We investigated the habitat choice of all wintering passerines in eight study areas in German salt marshes with special consideration of human impact on these habitats. Granivorous species that almost exclusively winter in salt marshes, Shorelark (Eremophila alpestris), Snow Bunting (Plectrophenax nivalis) and Twite (Carduelis flavirostris) were concentrated in the lower salt marsh vegetation and in the driftlines, while all other species preferred the high upper salt marsh communities, although Rock Pipits (Anthus petrosus littoralis) fed in muddy areas along ditches. Shorelarks switched habitat in conditions where seeds were scarce to feed instead on arthropods in upper salt marshes. Intensively sheep-grazed upper salt marshes resemble lower salt marshes in their vegetation and were therefore mainly visited by Shorelarks, Snow Buntings and Twites. In winter, the driftline is preferred by the two former species, while in autumn and spring more birds foraged in the salt marshes. Twites prefer to feed mainly on seeds of Salicornia. Areas with S. europaea are visited mainly in late autumn and early winter, while areas with S. stricta are used throughout the winter because of a steady supply of seeds. Several years after embankment, polders are hardly used any more by the lower salt marsh species as the habitat changes into freshwater marshes. Large embankment projects since the early 1960s have included salt marshes and intertidal flats, and the resultant loss of habitat is responsible for the decline of lower salt marsh species. For other passerine species the effects of reclamation are unknown. The effects of intensified grazing on the wintering populations of Shorelark, Snow Bunting and Twite are still unresolved. Although grazing supports lower salt marsh vegetation, the seed production per plant is much lower there and some important seed producers hardly occur. Since grazing was reduced and embankment projects have been stopped, the salt marsh areas (especially lower salt marshes) have increased and so have the wintering populations of Shorelark, Snow Bunting and Twite. For the other species, the consequences of habitat changes are unknown, although it is suggested that reduced grazing will support them. Reducing the human impact on salt marshes will, in the long run, probably lead to a natural salt marsh with much variety in elevation and in its corresponding vegetation and bird communities. Meanwhile, management by grazing might be required in parts of the salt marshes.     

Algal studies of the Danish Wadden Sea. V. Blue-green algae in higher salt march areas — their seasonal and spatial distribution

The blue-green algal flora in the higher salt marsh areas (above average high tide level) at Rejsby in the Danish Wadden Sea area has been investigated regularly throughout a one-year period. Twenty nine pigmented and two colourless taxa were recorded, and their morphology described in detail. The blue-green algae were particularly well developed in the the grazed Puccinellia marsh, at other sites the occurrence was scattered. In winter and spring few algae were seen. Mats appeared in June and then persisted for shorter or longer periods, in some areas throughout the rest of the year. On the basis of frequency analyses, thirteen assemblages characterized by the dominating species were recognized. Factors affecting the spatial and temporal distribution are discussed. The assemblages are compared to the algal communities described by Polderman.     

Integrated management of artificially created salt marshes in the Wadden Sea of Schleswig-Holstein, Germany

In the about 10,000 km² large Wadden Sea 353 km² of salt marshes exist. The great majority of these are artificial, i.e. developed through accretion enhancement techniques. Salt marshes in the Wadden Sea have a high coastal defence value as well as ecological significance. High salt marshes in front of sea walls reduce the wave-impact on the dikes and, therewith, the danger of breaching. At the same time, the salt marshes have a high ecological value, e.g., as resting places for migratory birds. In consequence, for coastal defence, salt marshes should be created and/or maintained. For nature protection, natural dynamic processes (incl. erosion) should prevail. To anticipate this possible conflict among coastal defence and environmental administration, in Schleswig-Holstein an interdepartmental working group established a salt marsh management concept. For information of the interested parties and for monitoring of the concept, an integrated salt marsh board was established, consisting of representatives from public administration and local interest groups (NGO's, dike and water boards, municipalities). Five years after implementation of the concept, this board established a first progress report. Although the concept was, in the beginning, met with great scepticism, five years of practical experience demonstrate that it functions well. The salt marshes are stable or growing, i.e. the management measures are successful. As a planning instrument, the concept is unambiguous, i.e. provides clear guidelines on how to manage the salt marshes. Finally, as an instrument of participation, the salt marsh board is valued positively by all members.     

Relationships between Sediment Microbial Communities and Pollutants in Two California Salt Marshes

Salt marshes are important ecosystems whose plant and microbial communities can alter terrestrially derived pollutants prior to coastal water discharge. However, knowledge regarding relationships between anthropogenic pollutant levels and salt marsh microbial communities is limited, and salt marshes on the West Coast of the United States are rarely examined. In this study, we investigated the relationships between microbial community composition and 24 pollutants (20 metals and 4 organics) in two California salt marshes. Multivariate ordination techniques were used to assess how bacterial community composition, as determined by terminal restriction fragment length polymorphism and phospholipid fatty acid analyses, was related to pollution. Sea urchin embryo toxicity measurements and plant tissue metabolite profiles were considered two other biometrics of pollution. Spatial effects were strongly manifested across marshes and across channel elevations within marshes. Utilizing partial canonical correspondence analysis, an ordination technique new to microbial ecology, we found that several metals were strongly associated with microbial community composition after accounting for spatial effects. The major patterns in plant metabolite profiles were consistent with patterns across microbial community profiles, but sea urchin embryo assays, which are commonly used to evaluate ecological toxicity, had no identifiable relationships with pollution. Whereas salt marshes are generally dynamic and complex habitats, microbial communities in these marshes appear to be relatively sensitive indicators of toxic pollutants.     

Effect of salinity-altering pulsing events on soil organic carbon loss along an intertidal wetland gradient: a laboratory experiment

Salinity changes resulting from storm surge, tides, precipitation, and stormwater run-off are common in coastal wetlands. Soil microbial communities respond quickly to salinity changes, altering the rate of soil organic carbon (SOC) loss and associated biogeochemical processes. This study quantified the impact of salinity-altering pulses on SOC loss, defined as microbial respiration (CO₂ flux) at high and low tide, CH₄ flux, and dissolved OC (DOC) release, in 3 intertidal wetlands (Jacksonville, FL, USA). Intact soil cores from a freshwater tidal, brackish, and salt marsh were exposed to simulated tides and 3 salinity pulsing events during a 53-day laboratory experiment. Soil and water physio-chemical properties, nutrient release, and microbial indicators were measured. Microbial respiration was the dominate pathway of SOC loss (>97 %). Soil hydraulic conductivity was greater in brackish and salt marshes and was critical to overall soil respiration. High tide CO₂ flux was greatest in the freshwater marsh (58 % of SOC loss) and positively correlated with DOC concentration; low tide CO₂ flux was greatest in brackish and salt marshes (62 and 70 % of SOC loss, respectively) and correlated with NH₄ ⁺ and microbial biomass. The freshwater marsh was sensitive to brackish pulses, causing a 112 % increase in respiration, presumably from accelerated sulfate reduction and N-cycling. SOC loss increased in the salt marsh pulsed with freshwater, suggesting freshwater run-off may reduce a salt marsh’s ability to keep-pace with sea level rise. Increased inundation from storm surges could accelerate SOC loss in freshwater marshes, while decreasing SOC loss in brackish and salt marshes.     

New multi-metric Salt Marsh Sediment Microbial Index (SSMI) application to salt marsh sediments ecological status assessment

Salt marshes are very important areas for biogeochemical cycling, sediment accretion, pollution filtration and retention and erosion and stabilization of the river margins. The high organic matter content in the salt marsh plant sediments along with the radial oxygen diffusion provided by these halophyte root systems gather the ideal conditions for the development of a microbial rhizosphere community. Due to the quick feedback of the microbial communities to an environmental change, these organisms become important monitors for environmental impact assessment. A Salt marsh Sediment Microbial Index (SSMI) that reflected physical–chemical and microbial parameters was applied to plant rhizosphere sediments of five salt marshes from three important water bodies from Portugal. The SSMI revealed to be plant-independent evaluating efficiently the different marshes according to their maturity degree and disturbance influence. Mature salt marshes SSMI classification grouped all the systems at this development stage, while the younger salt marshes are classified in different groups according to their evolution degree. Also the impact degree is reflected at this level discriminating also the more adversely impacted salt marshes. Being a multi-metric index, the SSMI sub-metrics are also susceptible of ecological interpretation, giving important backstage information about the underlying biogeochemical cycling processes.     

Delineation of spatial boundaries in a wetland habitat

A probabilistic similarity technique was used to locate spatial and temporal biotic boundaries in two west-central Florida marshes. By investigating spatial and temporal boundaries simultaneously, insights into community dynamics that were not apparent from examination of either kind of boundary in isolation were obtained. Recurring spatial boundaries in both marshes were found at the edges of deeper basins or near the edges of the marshes. Spatial boundaries shifted more frequently in Big Marsh, a large, well-drained marsh with extensive transition zones, than in Little Marsh, a poorly drained marsh with a relatively stable water level. Temporal boundaries occurred most frequently in autumn in both marshes. Temporal boundaries were associatd frequently with changes in spatial boundaries in Big Marsh, but only infrequently in Little Marsh. Simultaneous investigation of spatial and temporal boundary dynamics can be used to identify transition zones within marshes and can be used to determine from one year seasonal sampling surveys whether wetland boundaries will remain stable over more than one year.     

Role of biotic interactions and physical factors in determining the distribution of marsh species along an estuarine salinity gradient

Understanding the mechanisms that shape plant distribution patterns is a major goal in ecology. We investigated the role of biotic interactions (competition and facilitation) and abiotic factors in creating horizontal plant zonation along salinity gradients in the Elbe estuary. We conducted reciprocal transplant experiments with four dominant species from salt and tidal freshwater marshes at two tidal elevations. Ten individuals of each species were transplanted as sods to the opposing marsh type and within their native marsh (two sites each). Transplants were placed at the centre of 9‐m² plots along a line parallel to the river bank. In order to disentangle abiotic and biotic influences, we set up plots with and without neighbouring vegetation, resulting in five replicates per site. Freshwater species (Bolboschoenus maritimus and Phragmites australis) transplanted to salt marshes performed poorly regardless of whether neighbouring vegetation was present or not, although 50–70% of the transplants did survive. Growth of Phragmites transplants was impaired also by competition in freshwater marshes. Salt marsh species (Spartina anglica and Puccinellia maritima) had extremely low biomass when transplanted to freshwater marshes and 80–100% died in the presence of neighbours. Without neighbours, biomass of salt marsh species in freshwater marshes was similar to or higher than that in salt marshes. Our results indicate that salt marsh species are precluded from freshwater marshes by competition, whereas freshwater species are excluded from salt marshes by physical stress. Thus, our study provides the first experimental evidence from a European estuary for the general theory that species boundaries along environmental gradients are determined by physical factors towards the harsh end and by competitive ability towards the benign end of the gradient. We generally found no significant impact of competition in salt marshes, indicating a shift in the importance of competition along the estuarine gradient.     

Constraints on Salt Marsh Development Following Managed Coastal Realignment: Dispersal Limitation or Environmental Tolerance?

Salt marshes restored through managed coastal realignment (MR) often develop slowly and show persistent differences in vegetation from natural marshes. Development might be constrained by the availability of propagules or poor suitability of the abiotic environment for their establishment. To distinguish between these factors, we compared vegetation colonization and environmental conditions at a salt marsh created by MR at Brancaster, Norfolk, UK, with five reference marshes, varying in age from 30 to circa 6,000 years. After 5 years, plant communities of the MR site remained different from those in mature reference marshes. In contrast, the communities of the youngest reference marsh were not significantly different from mature reference marshes. At the MR site, abundance of perennial and later‐successional species was low and large areas remained unvegetated. These differences are unlikely to be due to dispersal limitation, because 76% of the species from the local species pool colonized the site within 5 years. Although the annuals Salicornia europaea and Suaeda maritima were abundant by year 2, they were not ubiquitous until the end of the study. Tidal elevations of the MR site were suitable for vegetation development, but soil redox potentials were lower than that at the reference sites. Reducing conditions in the MR site appear to be the major cause of vegetation differences from the reference marshes, as they are associated with an abundance of bare ground and a small range of vegetation clusters. Measures to avoid low sediment redox potentials may have a great benefit in some salt marsh restoration projects.     

The environmental consequences of climatic change on British salt marsh vegetation

The present relationship between sea level and the zonation of salt marsh vegetation is discussed in terms of the salt marshes of the Essex and Kent coasts. These marshes are already decreasing in area as a result of a number of different environmental pressures, including the sinking of the land relative to the sea, at a rate of about 3 mm per year, the result of isostatic adjustment following the last glaciation. Because most British salt marshes are backed by a sea wall the marshes can not respond to rising sea levels by migrating landwards, thus increasing the impact of sea level change. In view of this and of the importance of salt marshes as protection for the sea walls themselves, a conceptual model has been developed, of the likely impact of climate change and the resulting sea level rise, on British salt marsh vegetation. The basis of this approach is the assumption that a rise in sea level will cause the drowning of certain existing vegetation zones and their subsequent replacement by new vegetation types appropriate to the changed sea level. Estimates have been made of the likely impact of rises in sea level of 0.5, 1.0 and 1.5 metres on the five major vegetation zones identified in East Anglia. The validity of this approach is discussed, together with the likely additive effect of present degenerative changes observed in the Essex salt marshes. It is estimated that over the next 60 years a sea level rise of only 0.5 m, when existing degeneration is taken to account, would cause a loss of over 40% of the present area of salt marsh in Essex and probably also in Kent. These losses would mainly effect the higher salt marsh vegetation zones which would be replaced by pioneer communities. These predictions would be greatly magnified by larger rises in sea level. The wider ecological implication of these changes and some possible remedial measures are considered. These predictions are discussed in relation to the situation in the rest of East Anglia and for Britain as a whole.     

The natural regeneration of salt marsh on formerly reclaimed land

Question: Does the vegetation of restored salt marshes increasingly resemble natural reference communities over time? Location: The Essex estuaries, southeast England. Methods: Abandoned reclamations, where coastal defences had been breached in storm events, and current salt marsh recreation schemes were surveyed giving a chronosequence of salt marsh regeneration from 2 to 107 years. The presence, abundance and height of plant species were recorded and comparisons were made with adjacent reference salt marsh communities at equivalent elevations. Results: Of the 18 paired sites surveyed, 13 regenerated marshes had fewer species than their adjacent reference marsh, three had an equal number and two had more. The plant communities of only two de‐embankment sites matched that of the reference community. 0–50 year old sites and 51–100 year old sites had fewer species per quadrat than the 101+ year sites and the reference salt marshes. There was a weak relationship between differences in species richness for regenerated and reference marshes and the time since sites were first re‐exposed to tidal inundation. Cover values for the invasive and recently evolved Spartina anglica were greater within regenerated than reference marshes. Conclusions: Salt marsh plants will colonise formerly reclaimed land relatively quickly on resumption of tidal flooding. However, even after 100 years regenerated salt marshes differ in species richness, composition and structure from reference communities.     

Utilisation of Wadden Sea salt marshes by geese in relation to livestock grazing

To arctic breeding geese, the salt marshes of the International Wadden Sea are important spring staging areas. Many of these marshes have always been grazed with livestock (mainly cattle and sheep). To evaluate the influence of livestock grazing on composition and structure of salt-marsh communities and its consequences for habitat use by geese, a total of 17 pairs of grazed and ungrazed marshes were visited both in April and May 1999, and the accumulated grazing pressure by geese was estimated using dropping counts. Observed grazing pressure was related to management status and to relevant vegetation parameters.The intensity of livestock grazing influences the vegetation on the marsh. Salt marshes that are not grazed by livestock are characterised by stands with a taller canopy, a lower cover of grasses preferred by geese, and a higher cover of plants that are not preferred.Overall goose-dropping densities are significantly lower in ungrazed marshes compared to marshes grazed by livestock. Some ungrazed marshes had comparatively high goose grazing pressure, and these were all natural marshes on a sandy soil, or artificial mainland marshes with a recent history of intensive livestock grazing. Goose grazing is associated with a short canopy. The plant communities with short canopy, dominated by Agrostis stolonifera, Festuca rubra and Puccinellia maritima, together account for 85% of all goose droppings in our data.The sites that were not visited by geese differed very little from those that were visited, in the parameters we measured. This might indicate that there was no shortage of available habitat for spring staging geese in the Wadden Sea, in the study period.     

Development and N2-Fixing Activity of the Benthic Microbial Community in Transplanted Spartina alterniflora Marshes in North Carolina

Growth and maturation of transplanted salt marshes is often limited by the availability of nitrogen (N). We examined the role of N₂-fixing benthic microbial assemblages (microalgae and associated bacteria) in two restored marshes (1-year-old and 6-year-old marsh) and a natural salt marsh in the Newport River Estuary, North Carolina. Benthic N₂ fixation (nitrogenase activity, NA), chlorophyll a (Chl a ) concentration, Spartina alterniflora (smooth cordgrass) stem counts, and sediment organic matter content were determined in the three marshes. Significant differences were observed between sites for both Chl a and NA. The 1-year-old marsh always exhibited the highest levels of NA and Chl a . Sediment organic matter content was lowest in the 1-year-old marsh (∼2%), intermediate in the 6-year-old marsh (∼5%), and highest in the natural marsh (∼10%). Carbon and nitrogen analyses were also performed on the 1-year-old marsh sediments, which were depleted in N. A positive correlation was observed between surface sediment N and Chl a . Remineralized, microbially derived N may provide growth-limiting inorganic N to Spartina transplants. N₂-fixing microbial assemblages in the 1-year-old marsh may also be an important food source for marsh infauna. Benthic N₂-fixing microbial assemblages play a key role in the N economy of restored salt marshes.     

Dynamics of Bacterial and Fungal Communities on Decaying Salt Marsh Grass

Both bacteria and fungi play critical roles in decomposition processes in many natural environments, yet only rarely have they been studied as an integrated microbial community. Here we describe the bacterial and fungal assemblages associated with two decomposition stages of Spartina alterniflora detritus in a productive southeastern U.S. salt marsh. 16S rRNA genes and 18S-to-28S internal transcribed spacer (ITS) regions were used to target the bacterial and ascomycete fungal communities, respectively, based on DNA sequence analysis of isolates and environmental clones and by using community fingerprinting based on terminal restriction fragment length polymorphism (T-RFLP) analysis. Seven major bacterial taxa (six affiliated with the α-Proteobacteria and one with the Cytophagales) and four major fungal taxa were identified over five sample dates spanning 13 months. Fungal terminal restriction fragments (T-RFs) were informative at the species level; however, bacterial T-RFs frequently comprised a number of related genera. Amplicon abundances indicated that the salt marsh saprophyte communities have little-to-moderate variability spatially or with decomposition stage, but considerable variability temporally. However, the temporal variability could not be readily explained by either successional shifts or simple relationships with environmental factors. Significant correlations in abundance (both positive and negative) were found among dominant fungal and bacterial taxa that possibly indicate ecological interactions between decomposer organisms. Most associations involved one of four microbial taxa: two groups of bacteria affiliated with the α-Proteobacteria and two ascomycete fungi (Phaeosphaeria spartinicola and environmental isolate “4clt”).     

Impacts of environmental stress on resistance and resilience of algal‐associated bacterial communities

Algal‐associated bacteria are fundamental to the ecological success of marine green macroalgae such as Caulerpa. The resistance and resilience of algal‐associated microbiota to environmental stress can promote algal health and genetic adaptation to changing environments. The composition of bacterial communities has been shown to be unique to algal morphological niches. Therefore, the level of response to various environmental perturbations may in fact be different for each niche‐specific community. Factorial in situ experiments were set up to investigate the effect of nutrient enrichment and temperature stress on the bacterial communities associated with Caulerpa cylindracea. Bacteria were characterized using the 16S rRNA gene, and the community compositions were compared between different parts of the algal thallus (endo‐, epi‐, and rhizomicrobiome). Resistance and resilience were calculated to further understand the changes of microbial composition in response to perturbations. The results of this study provide evidence that nutrient enrichment has a significant influence on the taxonomic and functional structure of the epimicrobiota, with a low community resistance index observed for both. Temperature and nutrient stress had a significant effect on the rhizomicrobiota taxonomic composition, exhibiting the lowest overall resistance to change. The functional performance of the rhizomicrobiota had low resilience to the combination of stressors, indicating potential additive effects. Interestingly, the endomicrobiota had the highest overall resistance, yet the lowest overall resilience to environmental stress. This further contributes to our understanding of algal microbiome dynamics in response to environmental changes.     

Strong associations between plant genotypes and bacterial communities in a natural salt marsh

Although microbial communities have been shown to vary among plant genotypes in a number of experiments in terrestrial ecosystems, relatively little is known about this relationship under natural conditions and outside of select model systems. We reasoned that a salt marsh ecosystem, which is characterized by twice‐daily flooding by tides, would serve as a particularly conservative test of the strength of plant–microbial associations, given the high degree of abiotic regulation of microbial community assembly resulting from alternating periods of inundation and exposure. Within a salt marsh in the northeastern United States, we characterized genotypes of the foundational plant Spartina alterniflora using microsatellite markers, and bacterial metagenomes within marsh soil based on pyrosequencing. We found significant differences in bacterial community composition and diversity between bulk and rhizosphere soil, and that the structure of rhizosphere communities varied depending on the growth form of, and genetic variation within, the foundational plant S. alterniflora. Our results indicate that there are strong plant–microbial associations within a natural salt marsh, thereby contributing to a growing body of evidence for a relationship between plant genotypes and microbial communities from terrestrial ecosystems and suggest that principles of community genetics apply to this wetland type.