Spatial and temporal variation of fungal endophytic richness and diversity associated to the phyllosphere of olive cultivars

Fungal endophytes are micro-organisms that colonize healthy plant tissues without causing disease symptoms. They are described as plant growth and disease resistance promoters and have shown antimicrobial activity. The spatial-temporal distribution of endophytic communities in olive cultivars has been poorly explored. This study aims to investigate the richness and diversity of endophytic fungi in different seasons and sites, within the Alentejo region, Portugal. Additionally, and because the impact of some pathogenic fungi (e.g. Colletotrichum spp.) varies according to olive cultivars; three cultivars, Galega vulgar, Cobrançosa and Azeiteira, were sampled. 1868 fungal isolates were identified as belonging to 26 OTUs; 13 OTUs were identified to the genera level and 13 to species level. Cultivar Galega vulgar and season autumn showed significant higher values in terms of endophytic richness and diversity. At site level, Elvas showed the lowest fungal richness and diversity of fungal endophytes. This study reinforces the importance of exploring the combined spatio-temporal distribution of the endophytic biodiversity in different olive cultivars. Knowledge about endophytic communities may help to better understand their functions in plants hosts, such as their ecological dynamics with pathogenic fungi, which can be explored for their use as biocontrol agents.     

中国不同地理区域鸟兽物种丰富度的相关性

生物类群之间物种丰富度的相关性研究是当前物种多样性研究中的热点问题之一,目前,中国尚无相关的研究报道。我们收集了中国三种区域类型：动物地理亚区、行政区和保护区的鸟兽名录,分析了行政区与保护区、动物地理区和经纬度带中鸟兽物种数比值及其相关性。 结果表明：不同区域、动物地理区和经纬度带中鸟兽物种数都显著相关。保护区尺度鸟兽物种 数的相关系数为0.818和动物地理区中的华北区为0.768,其他所有区域和地理区域的鸟兽物 种数的相关系数都高于0.850。因此,鸟兽物种数的相关关系在一定程度上具有预测价值。我们发现不同区域鸟兽物种数比值无显著性差异;但是,不同区域间鸟兽物种数 比值差异显著。该比值在中国呈中间低四周高的分布趋势,其中东北地区最高。我们还利用历史累积调查数据与非历史累积调查数据进行了鸟兽物种数比值及其相关性分析,发现利用累积数据计算的相关性低于非累积数据计算的相关性,但利用累积数据计算的鸟兽物 种数比值高于非累积数据计算的比值。最后,探讨了为什么鸟类与兽类的物种数目会相关。我们根据物种－面积公式,S=CA^Z,导出了两个生物类群物种丰富度的相关关 系式。利用全国不同区域数据拟合,得到Z₁/Z₂＝0.913,Z₁/Z₂接近于1。于是 ,C₁/C2可视为近似等于R_am。本研究可推广到其他不同生物类群物种。物种数量的相关关系为快速评估区域的物种多样性提供了一条途径。     

Species richness correlations among primary producers in boreal forests

Close correlations in species numbers may make it possible to indirectly assess the species richness of difficult taxonomic groups by investigating indicator groups, for which data are more easily collected. We asked if species numbers correlate among the four dominating groups of primary producers in boreal forests (liverworts, macrolichens, mosses, and vascular plants) and if substrate affiliation of species (ground vs. other substrates), sample plot size (0.01–1000 m²), and stand age (young vs. old) influence correlation strength. We used three sets of study plots from northern Sweden each including wide ranges of species richness. Although there are large differences in the ecophysiology and substrate use of vascular plants and the two bryophyte groups (mosses and liverworts), we found strong positive correlations among them not previously reported from boreal forests. In contrast, no correlation in total species richness was found between macrolichens and the two bryophyte groups, despite large overlaps in their ecology. We suggest that the positive correlations among land plants (liverworts, mosses, and vascular plants) are linked to positive relationships between site moisture and species number for all three groups. In contrast, total species number of macrolichens has not been shown to be strongly associated with moisture. However, ground‐living lichens and mosses correlated negatively in old forests. This may relate to the inability of macrolichens to exploit shaded and wet old forest ground, a habitat that is used by many moss species. Furthermore, lichens and mosses of ‘other substrates’ correlated positively in old forests, probably because the amount of boulders was positively related to species richness in both groups. Generally, correlations became stronger with increasing plot size, whereas stand age had relatively little influence. We conclude that vascular plants could be used as an indicator group for species richness of mosses and liverworts in boreal landscapes.     

Application of species richness estimators for the assessment of fungal diversity

Species richness and distribution patterns of wood-inhabiting fungi and mycetozoans (slime moulds) were investigated in the canopy of a Central European temperate mixed deciduous forest. Species richness was described with diversity indices and species-accumulation curves. Nonmetrical multidimensional scaling was used to assess fungal species composition on different tree species. Different species richness estimators were used to extrapolate species richness beyond our own data. The reliability of the abundance-based coverage estimator, Chao, Jackknife and other estimators of species richness was evaluated for mycological surveys. While the species-accumulation curve of mycetozoans came close to saturation, that of wood-inhabiting fungi was continuously rising. The Chao 2 richness estimator was considered most appropriate to predict the number of species at the investigation site if sampling were continued. Gray's predictor of species richness should be used if statements of the number of species in larger areas are required. Multivariate analysis revealed the importance of different tree species for the conservation and maintenance of fungal diversity within forests, because each tree species possessed a characteristic fungal community. The described mathematical approaches of estimating species richness possess great potential to address fungal diversity on a regional, national, and global scale.     

Inferring Regional-Scale Species Diversity from Small-Plot Censuses

Estimation of the number of species at spatial scales too large to census directly is a longstanding ecological challenge. A recent comprehensive census of tropical arthropods and trees in Panama provides a unique opportunity to apply an inference procedure for up-scaling species richness and thereby make progress toward that goal. Confidence in the underlying theory is first established by showing that the method accurately predicts the species abundance distribution for trees and arthropods, and in particular accurately captures the rare tail of the observed distributions. The rare tail is emphasized because the shape of the species-area relationship is especially influenced by the numbers of rare species. The inference procedure is then applied to estimate the total number of arthropod and tree species at spatial scales ranging from a 6000 ha forest reserve to all of Panama, with input data only from censuses in 0.04 ha plots. The analysis suggests that at the scale of the reserve there are roughly twice as many arthropod species as previously estimated. For the entirety of Panama, inferred tree species richness agrees with an accepted empirical estimate, while inferred arthropod species richness is significantly below a previous published estimate that has been criticized as too high. An extension of the procedure to estimate species richness at continental scale is proposed.     

The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji,Japan

Mid-domain effect (MDE) models predict that the random placement of species'' ranges within a bounded geographical area leads to increased range overlap and species richness in the center of the bounded area. These models are frequently applied to study species-richness patterns of macroorganisms, but the MDE in relation to microorganisms is poorly understood. In this study, we examined the characteristics of the MDE in richness patterns of ectomycorrhizal (EM) fungi, an ecologically important group of soil symbionts. We conducted intensive soil sampling to investigate overlap among species ranges and the applicability of the MDE to EM fungi in four temperate forest stands along an elevation gradient on Mount Fuji, Japan. Molecular analyses using direct sequencing revealed 302 EM fungal species. Of 73 EM fungal species found in multiple stands, 72 inhabited a continuous range along the elevation gradient. The maximum overlap in species range and the highest species richness occurred at elevations in the middle of the gradient. The observed richness pattern also fit within the 95% confidence interval of the mid-domain null model, supporting the role of the MDE in EM fungal richness. Deviation in observed richness from the mean of the mid-domain null estimation was negatively correlated with some environmental factors, including precipitation and soil C/N, indicating that unexplained richness patterns could be driven by these environmental factors. Our results clearly support the existence of microbial species'' ranges along environmental gradients and the potential applicability of the MDE to better understand microbial diversity patterns.     

Species richness of plants and fungi in western Panama: towards a fungal inventory in the tropics

In order to document the species richness of plants and fungi in a tropical area, a trail of 500?m in tropical lowlands in the Chiriquí province, on the Pacific side of western Panama, was sampled each month during 2?years with 2?h dedicated to plants and 2?h dedicated to fungi, each by two botanists or mycologists respectively. The 24 sampling events yielded approximately 4,000 records of plants corresponding to 311 species as well as 1,614 records of fungi corresponding to approximately 567 species. Lists of more or less certain names of plants and fungi as well as voucher specimens are provided. The randomized species accumulation curve for plants approaches an asymptote and estimators yield stable values of 310–318 predicted plant species in the area of investigation. The curve for records of fungal species, however, did not saturate and all applied estimator functions failed to predict the total richness of fungi for the area convincingly. Two plant collections correspond to new records for Panama and 54 species and infraspecific taxa are new for the Chiriquí province. The identification of fungi is still in process and yielded two species probably new to science as well as 17 new records of species for Panama to date. In order to assess biodiversity patterns (e.g. fungi to plant ratios) of tropical fungi more accurately, it is necessary to repeat such investigations in other areas and to improve the tools for taxonomic identification of these highly diverse but mostly microscopic organisms.     

Diversity of saprobic microfungi

The data needed to derive an accurate estimate of saprobic microfungi are insufficient, incomplete and contradictory. We therefore address issues that will ultimately reveal whether there are 1.5 million global fungal species, which is the generally accepted working estimate. Our data indicates that large numbers of fungi occur on host families, such as Musaceae, host genera such as Nothofagus and individual host species such as Eucalyptus globulus, and that fungi may be specific or recurrent on different plant groups. Recent studies have shown that fungal numbers on hosts may be larger than originally thought as saprobes are organ-specific/-recurrent and changes in fungal communities occur as substrata decays. Other issues, such as the impact of geography, of methodology and of taxonomy are also addressed. There is evidence that fungi on the same host at different locations also differs; site-specific factors and geographic distance may be more important than host/substrate in shaping fungal assemblages. Methodology impacts on estimates of species diversity with many more taxa observed using indirect isolation protocols as compared to direct isolations from leaves. Our understanding of fungal species numbers in speciose genera is important. In some fungal groups accepted species have been reduced to a few species, while in other groups many cryptic species are being uncovered. While we make a number of generalisations from the studies reported here, this review also highlights some of the limitations mycologists currently have to contend with. A large body of knowledge exists for certain groups of microfungi or for microfungi occurring on certain substrata/hosts. However, it is likely that we are drawing conclusions from data that are somewhat biased toward fungi and host/substrata that are of interest to human endeavours. The discrepancy between the numbers of fungi described from only one economically important genus, Eucalyptus, and all the other members of the Myrtaceae is but one example of this bias. By incorporating the large body of work that is already available and adding appropriate complementary studies, we can accelerate our understanding of microfungal diversity and this will eventually lead us to a realistic estimate of global fungal species numbers.     

Twenty years of research on community composition and species distribution of arbuscular mycorrhizal fungi in China: a review

The biodiversity and distribution of arbuscular mycorrhizal fungi (AMF) in different ecosystems and plant communities in China has received increasing interest over the past decades. This has led to a steady increase in the number of scientific papers published on this topic. Studies have surveyed AMF-colonizing rhizospheres of most families of angiosperms, bryophytes, pteridophytes, and gymnosperms. China has about 30,000 plant species (one eighth of the plant species worldwide). A total of 104 AMF species within nine genera, including 12 new species, have been reported in environments such as croplands, grasslands, forests, and numerous disturbed environments. In this paper, we review data published over the past 20 years on AMF community composition and species distribution, the mycorrhizal status of plants, AMF spore communities in different habitats, and germplasm collections in China. Possible future trends in the study of the biodiversity of AMF are also briefly discussed. In particular, the aim of our review is to make some of the recent work published in the Chinese literature accessible to a wider international audience.     

Species diversity and endemism of five major Malesian islands: diversity–area relationships

Aim A comparison of biodiversity patterns within Malesia in relation to surface area. Location Analysis of the patterns in species richness and endemism of vascular plants in the five major Malesian islands, i.e. Java, Sulawesi, Sumatra, Borneo and New Guinea. Methods Available data on species richness and species ranges in correlation with the surface area of the respective islands were examined in this work. Estimations of total species numbers for these islands are presented based on extrapolation of all available published Flora Malesiana information and recent checklists, all in all comprising 12,000 different species. The regression analysis of overall species richness and endemism were studied for all species together as well as for different plant families to compare the fit with the Arrhenius species–area model. Results The five islands form a series of independent areas of increasing size suited for an analysis of the species–area relationships at the regional scale. All species taken together and those of families with even distribution throughout Malesia show significant species–area relationships. Non‐significant relationships were detected in families with western or eastern‐centred Malesian distribution patterns. Relationships between number of endemic species and surface area are significant for all species and for the majority of the families with significant species–area relationships. Main conclusions Species–area relationships of families appear to be dependent on species number. Families with high numbers of species usually have a significant species–area relationship whereas small families have not. For the families that display an eastern or western Malesian centred pattern, a historical biogeographical explanation should be invoked. Island surface area appears to be a predictor for island percent endemism in Malesian vascular plants. None of the islands appears to be a hotspot of endemism nor of species diversity, as no significant departure from the Arrhenius model was noted for any of them.     

New records of three Ramichloridium species on banana leaves in Panama and Taiwan

Although bananas are economically important crops and many fungi are recorded from these plants, detailed data about the fungi are scarce, e.g. with respect to their distribution and morphology in the field and in culture. Three hyphomycetes (anamorphic Dothideomycetes) known as potential pathogens on leaves of Musa species were identified based on morphology and DNA sequences. For the first time, Ramichloridium biverticillatum and R. musae are recorded from Panama and R. biverticillatum and R. ducassei from Taiwan and new hosts. The fungi are described and illustrated in detail from observation in situ and compared to their known morphology in vitro, in order to clarify some deviating molecular and morphological data from different sources. An updated preliminary key to Ramichloridium species on banana leaves is provided.     

Exploring potential biodiversity indicators in boreal forests

The present study evaluates indicators in Swedish spruce forests. We ask whether different species groups co-vary in their occurrence and to what extent species richness and composition is predictable from habitat structures. We studied 10 boreal spruce forest stands constituting a gradient in degree of selective logging. Occurrences of vascular plants, bryophytes, epiphytic lichens and wood-inhabiting fungi as well as habitat structures was inventoried. In addition, in five of the stands, beetles were sampled with windows traps. Total species richness was correlated with several habitat factors, mainly particular substrates and degree of forestry impact. However, the richness of a set of species regularly used as indicators did not correlate with habitat factors. Correlation in species richness among different organism groups were few and scale dependent. Only lichens and vascular plants formed nested subset patterns (i.e. species composition at poorer sites is subsets of the species present at richer sites) among the study sites. The study shows that in this forest type one cannot a priori assume that richness in one group of species correlated with richness in other, and measures of single habitat features may be relevant only to particular groups of species. Instead, monitoring and inventories should be based on a set of factors reflecting important aspects for different groups of organisms and if indicator species are to be used these should be chosen from several species groups.     

Correlation analysis between arbuscular mycorrhizal fungal community and host plant phylogeny

 为弄清丛枝菌根(arbuscular mycorrhiza, AM)真菌群落随宿主植物演化的变异规律,通过对MaarjAM数据库进行数据挖掘, 根据每个分子虚拟种(virtual taxa, VT)包含的DNA序列不少于5条的标准, 筛选出188种菌根植物。通过分析植物与其根内AM真菌的关系发现: AM真菌的物种丰富度随着寄主植物的分化而增加; 在不同的植物系统类群中, AM真菌的物种丰富度显著不同; 在起源时间较晚的被子植物和裸子植物中, AM真菌的物种丰富度显著高于起源较早的苔类、角苔类和蕨类植物类群, 而与寄生植物共生的AM真菌物种丰富度与早期植物无显著差异; 不同寄主植物进化类群间AM真菌组成差异显著。以上结果表明: AM真菌群落随着寄主植物进化而发生变化。在进化过程中, 寄主植物倾向于选择保留共生效率较高的AM真菌。     

The relative importance of trees versus lianas as hosts for phytophagous beetles (Coleoptera) in tropical forests

Aim Insect assemblages associated with lianas in tropical forests are poorly studied compared with those associated with trees. The importance of lianas for the maintenance of local species richness of insect herbivores in tropical forests is therefore poorly understood. With this in mind, a comparative study of the relative importance of trees and lianas as hosts for phytophagous beetles was carried out. Location The study area was located in the canopy of a dry tropical forest in Parque Natural Metropolitano, Panama province, Republic of Panama. Methods A crane system was utilized to access the canopy. The number of species and host specialization of adult phytophagous beetles associated with twenty‐six liana species of ten different families, and twenty‐four tree species of twelve different families were compared. Results A total of 2561 host associations of 697 species of beetles were determined (1339 for trees and 1222 for lianas). On average 55.8 ± 6.8 beetle species were found to be associated with each tree species while the comparable number for lianas was 47.0 ± 6.1. The pooled numbers of phytophagous beetle species associated with trees and lianas, respectively, were not significantly different. However, there were significantly more species feeding on green plant parts on lianas than on trees, and there were significantly more wood eaters on trees than on lianas. Phytophagous beetles associated with lianas were significantly more specialized than the tree associates due to a higher degree of specialization among the species feeding on green plant parts of lianas. Wood eaters and flower visitors showed no differences in host specialization on different growth forms. Main conclusion The present study shows that lianas are at least as important as trees for the maintenance of local species diversity of phytophagous beetles at this site. The mechanisms that drive the patterns can only be hypothesized. Plant architecture, size, and length of growing season are probably involved. Further studies, should include measurements of plant traits to elucidate experimentally what mechanisms that drive the patterns. Additional insight would come from similar studies in other forest types, and also studies of other major taxonomic groups of arthropod herbivores.     

The surrogacy potential of white-tailed sea eagle nesting habitat on islands of the Baltic Sea

In order to tackle the current biodiversity crisis, a plethora of tempting shortcuts, such as the surrogate species approach, have recently been used to pinpoint important areas for protection. At the same time, species-specific conservation programmes are implemented in order to ameliorate the status of target threatened species. In the cases where species-specific programmes are evaluated and found to provide no apparent benefit to the target species, it is important to evaluate whether such conservation efforts may benefit other taxa sharing the same landscape with the target species. Here we assess the surrogacy potential of white-tailed sea eagle (WTSE) nesting habitat as indicator of biodiversity richness (using vascular plants and fungi as surrogated taxa) on islands of the Archipelago Sea in South-western Finland. We compared species richness on islands with and without a WTSE nest. We found weak evidence that islands with a WTSE nest support higher richness of vascular plants than islands without a nest. Conversely, we found no evidence that WTSE nests could be valid surrogates for fungi species inhabiting old-growth forests. Within the spatio-temporal and ecological limits of the present study, we suggest that the nesting habitat of WTSE may hold some surrogate potential for taxa, such as vascular plants, that may indicate high habitat diversity. This finding however remains to be confirmed. At the same time, it appears evident that the WTSE nesting habitat has poor surrogate potential with regards to old-growth forests. Overall, our findings line up with a growing body of other studies calling for caution and careful evaluation of the surrogacy efficiency of single species.     

Helminth parasite richness among vertebrates

The numbers of intestinal helminth species (parasite richnesS) recorded from each of 488 vertebrate host species are compared using data compiled from the published literature. Associations between parasite richness, sampling effort, host size and host habitat (aquatic versus terrestrial) are assessed using a method designed to control for phylogenetic association. Parasite richness increases with the number of surveys on which each estimate of parasite richness is based (sampling effort). When the effects of sampling effort are controlled for, there remains a strong positive relationship between parasite richness and host body size. There is no tendency for aquatic hosts to harbour more parasite species than terrestrial hosts independently of differences in sampling effort and body size. The results are interpreted in the context of hosts representing habitats for parasite colonization, resource allocation between parasite species, and the age of the major mammalian radiations.     

Determinants of diversity in a naturally fragmented landscape: humid montane forest avifaunas of Mesoamerica

We used a published data set summarizing avifaunas of 31 montane patches of humid forest in Mesoamerica lo analyze avian distributions with respect to site characteristics. This forest type was originally widespread in the lowlands, and became restricted to mountains during Pleistocene climatic changes. Hierarchical partitioning. a recently developed regression procedure, was used to examine independent factor effects. Total species richness, richness of Mesoamerican endemic species, richness of narrowly endemic species, and richness of habitat specialists were considered separately, each analyzed at three spatial scales. For total richness and Mesoamerican endemics, regional-level variables, notably latitude. were most influential. Narrow endemics exhibited more complex patterns, driven by foci both in western Mexico and in Costa Rica and western Panama. Historical factors are suggested to have contributed to this latitudinal pattern, such that the isthmuses of Tehuantepec and Panama acted as barriers to range expansion and peninsular effects catalyzed speciation. elevating numbers of endemic species. In contrast to many anthropogenic fragmentation studies, area and other local-scale patch attributes had little influence on avifaunas. This discrepancy may be related lo fundamental differences in spatial and temporal scaling, with patterns uncovered herein more indicative of long-term community processes.