Fast and easy in vitro screening assay for cholesterol biosynthesis inhibitors in the post-squalene pathway

A whole-cell assay for screening cholesterol biosynthesis inhibitors in the post-squalene pathway has been developed. HL 60 cells were incubated for 24h with test substances. The nonsaponifiable lipids were extracted by means of liquid-liquid extraction using tert-butylmethylether. The raw extracts were purified by dispersive solid phase extraction using a primary-secondary amine material (PSA) and dried using sodium sulphate. The sterols were derivatized using N-trimethylsilylimidazole. GLC/MS analysis was carried out in less than 12.5 min using fast GLC mode. The obtained sterol patterns indicated which enzyme had been inhibited. Specific sterol patterns which reflect the different enzyme inhibitions were obtained using established inhibitors of cholesterol biosynthesis like AY 9944, NB 598, clotrimazole, aminotriazole and DR 258, a Delta24-reductase inhibitor prepared in our working group. For characterizing IC(50) values we used sodium 2-(13)C-acetate and quantified the incorporation of it into cholesterol relative to control levels after the samples had been normalized to their protein content.     

人隐静脉血管内皮细胞的分离、培养及鉴定

利用冠脉搭桥术后遗弃的隐静脉段获取内皮细胞,采用消化酶消化收集内皮细胞,扩增、冻存、复苏,在体外建立内皮细胞系。此方法简便易行,能在体外获得大量生物学特性保持良好的内皮细胞,为临床血管内皮化研究提供新的细胞来源。     

Confirmatory assay for the determination of tetracyline, oxytetracycline, chlortetracycline and its isomers in muscle and kidney using liquid chromatography-mass spectrometry

A confirmatory method is described for the determination of tetracycline, oxytetracycline and chlortetracycline in muscle and kidney using liquid chromatography-atmospheric pressure chemical ionisation spectrometry. The tetracyclines were extracted from tissue using glycine-HCl buffer and concentrated using solid-phase extraction. HPLC separation was carried out using a gradient and the tetracyclines were detected using a bench-top-LC-MS system. Several ions could be monitored for each tetracycline, allowing ion ratio measurements to be made. The detection limits for the assay were in the region of 10 ng/g in muscle and 20 ng/g in kidney. Validation was carried out at the maximum residue limit, the maximum residue limit and two times the maximum residue limit. The formation of epimers and tautomers of the tetracyclines, their presence incurred mtissues and difficulties in their accurate quantitation is discussed.     

Amplified fragment length polymorphisms reveal genetic differentiation among strains of Xanthomonas albilineans

Xanthomonas albilineans, the causative agent of leaf scald disease (LSD), colonizes the vascular system of sugarcane (Saccharum spp. hybrids). In this study X. albilineans strains from 28 countries were differentiated by using two methods of amplified fragment length polymorphism (AFLP). In the manual procedure, AFLP reactions were performed on 57 X. albilineans strains and after selective amplification using radiolabelled primers, the resulting products were separated using polyacrylamide gel electrophoresis. The autoradiographs were analyzed using GelCompar version 4.1 software (Applied Maths) to construct dendograms from similarity matrices. Fluorescent AFLP (FAFLP) was also employed on 52 X. albilineans strains using three fluorescently labelled primer combinations (automated AFLP). The FAFLP data was converted to a binary format using the Genemapper Software 3.7 (Applied Biosystems). Thereafter, dendograms were generated using the NTSYSpc. Software (USA). Distinct AFLP profiles were produced for the majority of the strains and were found to be useful in differentiating X. albilineans strains from various geographical locations. Fingerprints unique to each strain were reproducibly obtained and may be used to create a database for use in the identification of the various X. albilineans strains. It can be also concluded from the results obtained that the FAFLP has considerable technical advantages compared with the manual AFLP and also that the FAFLP is more sensitive than AFLP using radiolabelled primers in differentiating X. albilineans.     

2007-2008陕西部分零售畜禽肉沙门氏菌血清型和基因型

【目的】研究359株在2007-2008年分离于陕西部分地区零售畜禽肉中沙门氏菌的血清型和基因型,为确保食品安全提供依据。【方法】使用WHO指定的泰国SA公司的沙门氏菌诊断血清,采用玻片凝集法测定沙门氏菌的血清型。使用美国疾病预防控制中心推荐的脉冲场凝胶电泳方法确定沙门氏菌的DNA酶切图谱,BioNumerics软件分析电泳结果,确定沙门氏菌的基因型。【结果】359株沙门氏菌共检出24个血清型,以肠炎沙门氏菌(Salmonella Enteritidis)、鼠伤寒沙门氏菌(S.Typhimurium)、舒卜拉沙门氏菌(S.Shubra)、印第安纳沙门氏菌(S.Indiana)和德尔卑沙门氏菌(S.Derby)等为主,不常见血清型有圣保罗沙门氏菌(Salmonella Saintpaul)、里地乌沙门氏菌(S.Rideau)、田纳西沙门氏菌(S.Tennessee)、汤卜逊沙门氏菌(S.Thompson)、加里玛沙门氏菌(S.Galiema)、卡罗尔沙门氏菌(S.Kallo)、沙门氏菌Ⅲa(S.Ⅲa)、罗森沙门氏菌(S.Rissen)和布兰卡斯特沙门氏菌(S.Brancaster)等。鸡肉中最常见血清型为肠炎沙门氏菌,猪肉和羊肉中以德尔卑沙门氏菌检出率最高,而牛肉中以里地乌沙门氏菌为主。359株沙门氏菌使用XbaⅠ酶切分型后,按照88%的基因同源性,可分为7个大簇。同一血清型的沙门氏菌分型后基本位于同一大簇之中,虽然部分沙门氏菌的血清型不同,但分型后仍表现出较高的基因同源性和相似的基因型。【结论】陕西零售肉沙门氏菌的血清型和基因型表现为多样性的特征。     

Rapid spectrophotometric determination of oxygen consumption using hemoglobin, in vitro: light scatter correction and expanded dynamic range

The method of using absorbance in conjunction with hemoglobin (Hb) to monitor rapid changes in oxygen consumption in vitro was improved by using a non-linear calibration technique and multiwavelength spectroscopy. The O(2) dependence of Hb absorbance was effectively linearized using the current technique (R(2) = 0.990+/-0.002, n = 3), and extended the dynamic range of [O(2)] determinations by 1.6-fold over previous approaches. The association/dissociation rates of O(2) and Hb were evaluated using the current approach and were not significant on the 100-ms time domain. A method was also developed for compensating for large amplitude light scattering changes in turbid media using multiwavelength analysis. Both the nonlinear calibration curve and light scattering corrections were validated in isolated porcine heart mitochondrial preparations.     

The phase diagram of the Lennard-Jones fluid using temperature dependent interaction parameters

The forces of interaction between argon atoms can be described by the Lennard-Jones potential model. It is hypothesised that the use of temperature dependent interaction parameters, instead of using temperature independent interaction parameters, may lead to improvement in the prediction of the vapour–liquid coexistence curve. Published second virial coefficient data were used to fit a simple two-parameter temperature dependent model for the collision diameter and well depth. Vapour–liquid coexistence curve for argon was simulated in the NVT Gibbs ensemble Monte Carlo technique. The simulations were carried out using each of the temperature independent and temperature dependent parameters in the temperature range: 110–148 K. The critical temperature and density were determined using the Ising-scaling model. The results using temperature dependent parameters produce, overall, a more accurate phase diagram compared to the diagram generated using temperature independent interaction parameters. The root mean square deviation is reduced by 42.1% using temperature dependent interaction parameters. Also, there was no significant difference between the results obtained using temperature dependent interaction parameters and the highly accurate and computationally demanding phase diagrams based on three body contributions.     

Desiccation tolerance of spermatozoa dried at ambient temperature: production of fetal mice

Long-term preservation of mouse sperm by desiccation is economically and logistically attractive. The current investigation is a feasibility study of the preservation of mouse sperm by convective drying in an inert gas (nitrogen). Mouse sperm from the B6D2F1 strain isolated in an EGTA-supplemented Tris-HCl buffer were dried using three different drying rates and were stored for 18-24 h at 4 degrees C. The mean final moisture content was <5% for all the protocols. After intracytoplasmic sperm injection (ICSI), the mean blastocyst formation rates were 64%, 58%, and 35% using the rapid-, moderate-, and slow-drying protocols, respectively. The slow-drying protocol resulted in a rate of development significantly lower than that observed using rapid- and moderate-drying protocols and indicated that a slower drying rate may be detrimental to the DNA integrity of mouse sperm. The transfer of 85 two- or four-cell embryos that were produced using rapidly desiccated sperm resulted in 11 fetuses (13%) on Day 15 compared with the production of 34 fetuses (40%) produced using the transfer of 86 two- or four-cell embryos that were produced using fresh sperm (P < 0.05). The results demonstrate the feasibility of using a convective drying protocol for the successful desiccation of mouse sperm and identifies some of the important parameters required for optimization of the procedure.     

Effect of synthesis method and chemical reagents on the structural parameters,particle size,and optical and photoluminescence properties of ZnS nanostructures

In this experimental study, ZnS nanostructures were synthesized using two hydrothermal and co‐precipitation methods with different precursors. Different reagents and precursors were changed to obtain the best product size and morphology. The structure and crystal phase of the products were studied using X‐ray diffraction (XRD) patterns. Some structural parameters were calculated using the XRD results and a product composition was obtained by energy dispersive X‐ray (EDX) analysis and Fourier transform infrared (FT‐IR) spectra to study the chemical composition. The size and morphology of ZnS nanostructures were obtained by scanning electron microscopy (SEM). The optical properties of the synthesized ZnS nanostructures were examined using ultraviolet–visible (UV–Vis) spectra to estimate the optical band gap. Band gap energies were higher than those in the ZnS bulk sample, mainly due to quantum size effects. The photoluminescence (PL) properties of the products were investigated using PL spectra. The results showed the effect of two factors, namely synthesis method and chemical reagents, on the structure parameters, crystallite size, product size and morphology, and optical and PL properties.     

Measurement of DNA length by gel electrophoresis II: Comparison of methods for relating mobility to fragment length

Relationships between DNA length and electrophoretic mobility in an agarose gel have been compared by estimating the lengths of known DNA polymer fragments, using other fragments in the series as standards. Global estimates were made using 10 fragments as standards; local estimates were made using the two closest fragments on either side of the unknown as standards. Most relationships were fitted by least squares. All the relationships gave more accurate local than global estimates. The most accurate results were obtained using the reciprocal relationship, where the maximum error in the local estimates was less than 0.1%. The semilog relationship gave the least accurate results, with a maximum error in the local estimates of almost 5%. The polymer fragments were also used as standards to estimate the lengths of λ DNA restriction fragments. Here the estimates were in error by up to 3%, indicating the influence of base composition and sequence on electrophoretic mobility.     

Isolation and characterization of culturable halophilic microorganisms of salt ponds in Lianyungang,China

The Lianyungang salt ponds are an extreme saline environment, and their microbial communities have not been characterized. A typical extreme halophilic archaeon strain designated as HBCC-2 (GenBank accession number: EF687739) was isolated from the salt ponds of Lianyungang in Jiangsu Province, P. R. China, using conventional microbial culture methods. The other halotolerant bacterial strain designated as HBCC-3 (GenBank accession number: EU377478) was isolated from the same sampling sites. The morphological and physiological characteristics of HBCC-2 and HBCC-3 were observed and examined. G+C content of HBCC-2 and HBCC-3 were determined using high-performance liquid chromatography. The cellular phospholipid fatty acids were analyzed using gas chromatography-mass spectrometry. The 16S rRNA gene sequences of the strains HBCC-2 and HBCC-3 were amplified by PCR using archaeal primers and bacterial primers, respectively. Homology of 16S rRNA gene sequences of the strains HBCC-2 and HBCC-3 were compared with the other similar sequences obtained from GenBank using the BLAST program. Phylogenetic analysis was performed using the software MEGA 4.0 after multiple alignments of sequence data using software CLUSTALW 1.8. The evolutional distances (by Kimura’s model) were calculated and the clusters were performed with the neighbor-joining method. The results showed that the 16S rRNA gene sequences of the strains HBCC-2 and HBCC-3 are related to the genera Halorubrum and Alkalibacillus, respectively. Two phylogenetic trees were constructed by phylogenetic analysis based on the 16S rRNA gene sequence. Based on the above results, the strains HBCC-2 and HBCC-3 were finally identified. The discovery of the two species provides an opportunity to further study these halophilic microorganisms in the Lianyungang salt ponds.     

Measurement of Shoulder Range of Motion in Patients with Adhesive Capsulitis Using a Kinect

Range of motion (ROM) measurements are essential for the evaluation for and diagnosis of adhesive capsulitis of the shoulder (AC). However, taking these measurements using a goniometer is inconvenient and sometimes unreliable. The Kinect (Microsoft, Seattle, WA, USA) is gaining attention as a new motion detecting device that is nonintrusive and easy to implement. This study aimed to apply Kinect to measure shoulder ROM in AC; we evaluated its validity by calculating the agreement of the measurements obtained using Kinect with those obtained using goniometer and assessed its utility for the diagnosis of AC. Both shoulders of 15 healthy volunteers and affected shoulders of 12 patients with AC were included in the study. The passive and active ROM of each were measured with a goniometer for flexion, abduction, and external rotation. Their active shoulder motions for each direction were again captured using Kinect and the ROM values were calculated. The agreement between the two measurements was tested with the intraclass correlation coefficient (ICC). Diagnostic performance using the Kinect ROM was evaluated with Cohen’s kappa value. The cutoff values of the limited ROM were determined in the following ways: the same as passive ROM values, reflecting the mean difference, and based on receiver operating characteristic curves. The ICC for flexion/abduction/external rotation between goniometric passive ROM and the Kinect ROM were 0.906/0.942/0.911, while those between active ROMs and the Kinect ROMs were 0.864/0.932/0.925. Cohen’s kappa values were 0.88, 0.88, and 1.0 with the cutoff values in the order above. Measurements of the shoulder ROM using Kinect show excellent agreement with those taken using a goniometer. These results indicate that the Kinect can be used to measure shoulder ROM and to diagnose AC as an alternative to goniometer.     

两株不同地域的家蚕微孢子虫分离株的细胞侵染力 比较及遗传多样性分析

家蚕微孢子虫(Nosema bombycis)是蚕业生产上一种毁灭性病害—— 微粒子病的病原体。文章将安徽和重庆两地域来源的病原性家蚕微孢子虫分离株进行草地贪夜蛾Sf9细胞感染性检测, 结果显示二者对细胞的侵染能力存在显著差异。为进一步探讨不同家蚕微孢子虫分离株的种群多态性, 进行了孢子虫核糖体DNA序列的测定和系统聚类比较, 结果表明SSU rDNA(Small subunit ribosomal DNA)和ITS(Internal transcribed spacer)在不同地域的种群差异性并不显著。通过检索重庆株全基因组数据及其他地域株rDNA序列, 显示在家蚕微孢子虫rDNA元件的部分SSU rDNA结构复制子中存在MITE-like转座元件的插入, 表明家蚕微孢子虫rDNA结构的多样性。     

双壳贝类线粒体基因组结构的比较

利用比较基因组学和生物信息学方法, 比较分析了已登录到GenBank中的14种海产双壳贝类和2种淡水双壳贝类的线粒体基因组的结构特征。结果发现, 双壳贝类线粒体的基因组结构、基因排列顺序均互不相同; 不同目、科和属之间线粒体基因组的大小、基因排列方式以及基因种类也存在明显的差异, 尤其是基因排列方式没有明显的规律。对16种双壳贝类的线粒体基因组全序列、编码基因序列进行系统分析, 分别得到了不同的聚类结果, 即用基因组全序列聚类时, 16种贝类的聚类结果与传统的形态学分类地位基本相同; 而将16种贝类的所有蛋白质编码基因和2个rRNA基因按照一致顺序排列起来进行聚类时, 所得的系统分类情况与这些贝类传统的形态学分类地位相差较大。     

Distribution of RoekoSeal sealer applied by three obturation techniques

The aim of the study was to evaluate the distribution of Roekoseal Automix sealer using three different obturation techniques. Forty-five single-rooted extracted human teeth were prepared in a crown-down manner using ProFile instruments. After instrumentation the specimens were filled using Roekoseal Automix with the cold lateral condensation, Thermafil and Obtura II techniques. Each root was sectioned horizontally. Color images were obtained using a reflected-light microscope. The cross-sections were assessed by microscopy for distribution of the sealer. Root canals filled with cold lateral condensation technique had statistically significant (p = 0.0001) more sealer in the apical portion in comparison to the apical portion of the specimens obturated with Thermafil and Obtura II techniques.     

Intravenous glucose tolerance test in the polycystic ovary syndrome

The problem of hyperinsulinism and insulin resistance, previously observed by us in PCOS using the tolbutamide test, was studied in the present research using intravenous glucose tolerance test (IVGTT). 16 women (3 obese) aged 14-34 years, affected by PCOS, were studied. The diagnosis of PCOS was made using clinical, hormonal, radiologic and echographic criteria. 8 age matched healthy women were used as controls. Glucose and insulin curves, glucose (GA) and insulin (IA) response areas and IA/GA ratio (insulin resistance index-IRI-) were studied by IVGTT. Both the mean insulin peak and the mean insulin area were significantly more elevated in patients than in controls. Average IRI value also was significantly higher than that of controls. The presence of both an hyperinsulinism and an insulin resistance is shown by the higher values in patients compared to controls. No correlation was found between either insulin areas or IRI values with plasma testosterone and urinary dehydroisoandrosterone, whereas correlations were demonstrated in previous studies, using OGTT, by us and other Authors and by us using tolbutamide test. The difference in the nature of the various stimuli performed seems to explain the different results.     

Multilocus DNA fingerprinting and RAPD reveal similar genetic relationships between strains of Oreochromis niloticus (Pisces: Cichlidae)

Two molecular techniques which reveal highly variable DNA polymorphisms, RAPD and multilocus DNA fingerprinting, were used to evaluate genetic diversity between six aquacultural strains of Oreochromis niloticus (tilapia) from the Philippines. The results using both techniques were in close agreement Within-strain heterozygosity values were similar and were correlated between the two data sets, but statistical errors associated with the RAPD data set were lower. Although genetic distances between strains were greater using DNA fingerprinting, the distances measured using both methods were significantly correlated. Both methods were useful in estimating variation between strains, but they offered different advantages. RAPD was technically easier to perform and produced results with low statistical error, whereas DNA fingerprinting detected greater genetic differentiation between strains. The theoretical basis for using RAPD and multilocus minisatellite markers for population studies is discussed.     

Characterisation of vortex shedding in vascular anastomosis models using pulsed Doppler ultrasound.

Vortex shedding at vascular anastomoses were investigated in vitro using a 20 MHz pulsed-wave Doppler velocimeter. Centreline velocity measurements were made at various axial distances in simplified polyurethane models of proximal and distal end-to-side anastomoses of angles 15, 30, 45, 60 and 80 degrees using pulsatile flow waveforms similar to those in femoropopliteal bypass grafts. The in-phase and quadrature Doppler signals were recorded and the maximum frequency waveform, averaged over 64 cycles, was obtained using short-time Fourier transform. A fourth-order Butterworth low-pass filter was employed to separate the vortex velocity signal from the convective velocity. The vortex signal envelope was calculated using a Hilbert transform method and the vortex amplitude was taken as the maximum of this envelope. The results show that higher vortex amplitude were found in the proximal anastomoses and under resting flow conditions. Although the vortex amplitudes generally increased with angles of anastomosis, they were found to be higher in the 60 degrees than in the 80 degrees proximal anastomosis. The vortex structures were investigated using spectrograms and these show prominent features at 40-50 Hz indicative of the short-duration oscillatory signals during the decelerative phase of systole expected from the passage of vortices. The study indicates that flow disturbances due to vortex shedding may be a common feature in femoropopliteal bypass grafts.     

The synthesis of vitellogenins by the digestive gland of Helix aspersa: evidence from cell-free translation of mRNA.

All the RNAs were extracted separately from the gonads and digestive glands of the garden snail Helix aspersa. After separation by oligo-dT-cellulose chromatography, the mRNA were evaluated using optical density measurements and agarose gel electrophoretic analysis and then used in a cell-free translation system: a rabbit reticulocyte lysate added with 35S methionine. The in vitro synthesized proteins were characterized by immunoprecipitation with polyclonal antibodies which were raised against mature oocyte proteins. The proteins were then evaluated quantitatively using liquid scintillation counting and qualitatively using SDS polyacrylamide gel electrophoresis and fluorography. The results demonstrated that the digestive gland of the garden snail is a vitellogenin synthesis site.