Indigo: an annotated bibliography

This bibliography lists and comments on publications describing the history, preparation, chemistry and some applications of indigo and related dyes. Note that the commentary by the author is in italics after the bibliographic information.     

Indigo: an annotated bibliography

This bibliography lists and comments on publications describing the history, preparation, chemistry and some applications of indigo and related dyes. Note that the commentary by the author is in italics after the bibliographic information.     

Modelling the larval dispersal of Acanthaster planci

The desire to understand the observed patterns of Acanthaster population spread throughout the Great Barrier Reef (GBR) has necessitated the development of numerical models which are capable of simulating the hydrodynamics associated with large assemblages of reefs over the time scale of larval dispersal. Models are presented which provide an overview of the physical processes controlling the advection of larvae within the Cairns Section of the GBR Marine Park, on the scale of tens to hundreds of kilometres. The relevant scales and relative importance of the distinct processes are discussed. The models are based on a previously tested numerical hydrodynamic model and are validated by comparison with observations documented in the physical oceanographic literature. Overall, model outputs correspond well to our understanding of the large-scale features and dynamics of water circulation over the continental shelf. Regional variation in circulation predicted by the models may result in significant differences in the movement of larvae.     

Bias in manta tow surveys of Acanthaster planci

To investigate the biases associated with manta tow surveys of Acanthaster planci, counts obtained by manta-towed observers were compared with counts made on SCUBA swims under a limited range of conditions. Five 10 m wide strip transects on different parts of two reefs and with different densities of A. planci were surveyed. On average, 22.7% of starfish counted on SCUBA searches were counted on manta tows over the same transect (SD=12.0%, n=69). This proportion is termed sightability. As sightability decreases with increasing transect width, we estimate that, on average, less than 5% of the A. planci present are counted on routine manta tows which are conducted over transect of undefined width. Multiple regression analysis was used to determine which of 33 variables explained most of the variation in sightability in 10 m wide transects. The most influential variables were the proportion of cryptic starfish and an index of the degree of reef complexity. A regression equation designed to improve estimates of the abundance of A. planci on routine manta tows was developed. However, as it explained only 39% of the variation in sightability, this equation is of limited value in stabilising the negative bias associated with manta tow counts. In view of the variability of this bias, the manta tow technique is not suitable for estimating absolute densities of A. planci. Manta tow surveys are appropriate for identifying gross relative differences between densities of A. planci, and thus for determining broad-scale patterns of abundance. As such, they are a cost-effective method of estimating the geographical extent of A. planci outbreaks.     

Inter-terminal transportation: an annotated bibliography and research agenda

The seemingly unlimited growth of containerized transport is nowadays associated with an increasing number of seaport container terminals and facilities as well as demand for port-centric value-added and just-in-time logistics services. Intense global and local competition as well as geographical limitations urgently require efficient means to handle inter-terminal transportation. Many factors influence the productivity and efficiency of inter-terminal transportation as well as its economic and environmental implications. In the last two decades, these aspects have led to a growing interest in research, in particular concerning decision analytics and innovative information technology aiming to better understand, improve, and operate inter-terminal transportation. In this paper, we present a chronological overview of related works as an annotated bibliography in order to reflect the current state of research. Furthermore, we identify future research issues and propose a respective research agenda.     

Collagenase in Stomach of Crown-of-thorns Starfish Acanthaster planci

Acetobacter pasteurianus strains IFO3283, SKU1108, and MSU10 were grown under acetic acid fermentation conditions, and their growth behavior was examined together with their capacity for acetic acid resistance and pellicle formation. In the fermentation process, the cells became aggregated and covered by amorphous materials in the late-log and stationary phases, but dispersed again in the second growth phase (due to overoxidation). The morphological change in the cells was accompanied by changes in sugar contents, which might be related to pellicle polysaccharide formation. To determine the relationship between pellicle formation and acetic acid resistance, a pellicle-forming R strain and a non-forming S strain were isolated, and their fermentation ability and acetic acid diffusion activity were compared. The results suggest that pellicle formation is directly related to acetic acid resistance ability, and thus is important to acetic acid fermentation in these A. pasteurianus strains.     

Lichen purple—an annotated bibliography

This bibliography lists and contains comments on publications describing the textile dyeing applications and organic chemistry of purple dyes derived from lichens. Elsewhere in this issue such colorants are termed orcein; the usage “lichen purple” reflects the historical emphasis of the work described. Note that commentary by CJC is placed after the bibliographic information in italics.     

Identification of 23-demethylacanthasterol in an asteroid,Acanthaster planci and its synthesis

23-Demethylacanthasterol was identified in an asteroid, $\text{Acanthaster planci}$, by GC-MS analysis and direct comparison with the synthetic sample prepared from 23-demethylgorgo-sterol. The sterol composition of $\text{A. planci}$ is also described.     

Effects of water-level fluctuations on lakes: an annotated bibliography

Water-level fluctuations (WLF) in lakes and rivers, especially their extent, frequency and duration, are dominant forces controlling the functioning of these ecosystems. In particular, WLF play an important role in the lake’s littoral and aquatic–terrestrial interface processes. WLF may take place on different spatial and temporal scales under natural conditions but water levels have been artificially modified in regulated lakes, and their impacts are expected to be enhanced within the actual global change scenarios with forthcoming management problems. This article presents an overview on the literature published on this important topic since 1991 by using journals indexed in the ISI Web of Knowledge. The overall objective was to examine temporal and spatial trends in publications on WLF, the specific aspect of WLF concerned and their main effects. Throughout the article we have used case studies to illustrate different effects of WLF on the variety of lake habitats and indicators that have been studied. Overall, the number of papers published on the subject since the 1990s has risen steadily, when less than ten papers were published each year; until 2006 and peaking in 2005. The greatest number of papers on WLF has been carried out in Europe and North America (c. 73%). These data also showed that the effects of WLF have not been studied equally for different groups of organisms. There is a greater interest on macrophytes, which are the most studied group of organisms (18.4% of the papers). Nearly 7% of the papers deal with algae, and zooplankton and invertebrates account for a 7% followed by fish. WLF effects on ecosystems are very complex, and the biological effects in lakes are greatest in shallow water and littoral areas, where even small changes in water levels can result in the conversion of large areas of a standing-water environment in air exposed habitats. Finally, these data might serve to highlight knowledge gaps still existing on this topic and, in particular, some of the approaches that can potentially contribute to solve several of these lacunae are explored.     

Aspects of the ecology of the coral-eating starfish Acanthaster planci

In the central region of the Great Barrier Reef, Acanthaster planci eats its own disk area of coral each day. At the southern end of the reef lagoon populations of A. planci eat substantially less than this amount of coral per day. Branching and plate corals are preferred food species and massive and encrusting forms are rejected while the preferred food species are available. Only when branching and plate forms on a reef have been consumed will A. planci attack massive and encrusting species. On Australian reefs preferred food species form between 70–99% of the coral cover.
On the Great Barrier Reef A. planci spawns in January and juveniles settle in the top 3 m of water on the windward edge of reefs or on isolated patch reefs behind the main reef. Intolerance of wave attack forces the growing starfish to migrate into deeper water. Lateral movements, probably induced by shortage of living coral in deep water, bring the starfish around the ends of the reef to the leeward side. Here they destroy most of the living coral.
It is suggested that the visual impact of A. planci on reefs of the Indo-Pacific region is related to the composition of the coral fauna. Reefs with a high proportion of preferred food species will be severely damaged while those with faunas composed mainly of massive and encrusting forms will not be altered greatly by starfish predation.
Work on larval development of A. planci carried out by Henderson & Lucas, 1971 showed that metamorphosis took place only at water temperatures of 28^o -29^o C. This suggests that the A. planci plague on the Great Barrier Reef will not spread south of latitude 20^o S (29^o C isotherm in January).     

A gonad-stimulating peptide of the crown-of-thorns starfish,Acanthaster planci

The crown-of thorns starfish, Acanthaster planci, has been blamed for coral mortality in a large number of coral reef systems in the Indo-Pacific region. Because population outbreaks of A. planci are closely related to reproduction, it is important to examine the mechanism of reproductive control in this starfish. Previously, a relaxin-like gonad-stimulating peptide (RGP) in starfish Asterina pectinifera has been identified as the gonadotropin responsible for final gamete maturation. On the basis of homology research on RGP cDNAs from several species, this study was carried out to identify gonadotropin in A. planci. The cDNA sequence of RGP was determined using a RACE product of mRNA from the radial nerves of A. planci. The coding DNA sequence consisted of 351 base pairs with an open reading frame encoding a peptide of 116 amino acids (aa), including a signal peptide (29 aa), B-chain (19 aa), C-peptide (44 aa), and A-chain (24 aa). The chemical structure of A. planci RGP was exactly the same as that of A. pectinifera RGP. Furthermore, synthetic RGP could induce gamete spawning and oocyte maturation in the ovarian fragments of A. planci. This strongly suggested that the RGP is a gonadotropin in A. planci.     

Reinhart Heinrich (1946-2006): an annotated bibliography

Reinhart Heinrich contributed to many areas of theoretical biology, most notably to metabolic control analysis, a field that he helped to create, but also different aspects of modelling and to the evolution of enzyme catalysis. His interests were initially focussed on the erythrocyte, but subsequently broadened to encompass calcium oscillations, glycolytic oscillations, membrane processes and signal transduction. His publications are arranged here according to subject area, together with some introductory notes.     

Individual recognition and phenotypic variability in Acanthaster planci (Echinodermata: Asteroidea)

Summary A coding method for identifying individuals by utilizing natural attributes (numbers and disposition of arms, madrporites, anuses, spines and deformities) permits individual recognition of crown-of-thorns sea stars Acanthaster planci. Because natural injuries altering parts of the code are frequent in A. planci (present in 20% to 40% of the individuals in a population), the physiognomy of the centrally located periproct, which is much less frequently injured than peripherally located areas, was used in combination with the arrangement of arms and madreporites. Identical madreporite/arm codes occurred in fewer sea stars in Guam (0%) than in Panamá (14%). The greater variability among sea stars at the western Pacific locality could be due in part to the higher incidence of gross deformities (presumed injuries) in Guam (43%) compared with Panamá (17%).     

Acanthaster planci is a major cause of coral mortality in Indonesia

The corallivorous crown-of-thorns starfish (COTS), Acanthaster planci, is recognised as a major cause of coral reef degradation throughout much of the Pacific Ocean. However, the effects of COTS on the high diversity reefs in Indonesia have been largely overlooked. In 2007, high densities of COTS were observed in two regions of Indonesia: Aceh and Halmahera. Densities of COTS ranged from 0 to 52 starfish 2,000 m² across 24 sites in Aceh and from 0 to 18 starfish 2,000 m² at 10 sites in Halmahera. Mortality rates of Acropora spp. were very high at affected sites: over 50 % of colonies had been killed at seven of the 16 affected sites. A review of historical sources going back to 1969 suggests that COTS have damaged many reefs throughout Indonesia, including much activity within the Indonesian section of the Coral Triangle. Furthermore, the data suggest that COTS activity has increased rapidly since 2000. Very little of this activity has been reported in the primary literature, and there is a general lack of awareness in Indonesia of COTS as a potential cause of reef degradation. This lack of awareness, combined with limited monitoring efforts, means that damage caused by COTS is often attributed to other causes, such as destructive fishing, bleaching or tsunami. COTS are clearly a major source of coral mortality in Indonesia of which scientists and government need to be more cognizant.     

Observation of algal colonization on Acropora aspera killed by Acanthaster planci

Algae started colonizing branches of the coral Acropora aspera (Dana) killed by the sea star Acanthaster planci (Linnaeus) within less than 24 hours. Two blue-greens ((Microcoleus lyngbyaceus (Crouan) Ag. and Hormothamnion solutum B. & F.)) dominated the early community but became less abundant than a brown ((Giffordia indica (Sonder) Papenfuss & Chihara)) after 26 days.