A Low-Cost Manipulation of Food Resources Reduces Spatial Overlap Between Baboons (Papio ursinus) and Humans in Conflict

Competition over food and space is a primary driver of human?Cwildlife conflict. In the Cape Peninsula, South Africa, chacma baboons (Papio ursinus) have adapted to a human-modified environment, sleeping on the urban edge and raiding anthropogenic food sources on a daily basis. Human monitors, who herd baboons away from residential areas, are currently the preferred method of conflict mitigation. However, this method is costly and suffers from short-term interruptions, wherein the unexpected absence of monitors may lead to unprepared residents using lethal force to deter raiding baboons. Elsewhere in the chacma baboon distribution (in nonconflict areas), artificial food patches have been shown to alter troop movements drastically by eliciting consistent leadership behavior from alpha males. We investigated whether an artificial patch could be used to draw baboons away from the urban environment in the absence of monitors. First, we introduced an artificial food patch into natural land within a troop??s range and monitored movement and activity patterns. Although the troop utilized the patch, there was not a significant decline in use of the urban space as they continued to favor food in urban waste sites. Maintaining the patch, we then restricted access to these waste sites using wire-mesh fencing and observed a significant reduction in the time the troop spent within the urban space. In both experimental phases we observed consistent leadership, with dominant individuals arriving first at the patch and monopolizing food items thereon. Thus, we recommend the combined strategy of reducing raiding incentives in conjunction with provisioning as a short-term, cost-effective strategy to alter a baboon troop??s movement patterns and raiding frequency.     

The chacma baboon (<Emphasis Type="Italic">Papio</Emphasis><Emphasis Type="Italic">ursinus</Emphasis>) through time: a model of potential core habitat regions during a glacial–interglacial cycle

The aim of this research is to understand changes in the biogeography of the chacma baboon (Papio ursinus) through time, by modelling potential habitat changes through the last glacial–interglacial cycle (last interglacial, glacial maximum and current conditions). An environmental envelope model in a geographic information system is used to produce a range of habitat distribution models for the chacma baboon. Initially it is modelled as a single taxon, following which the data are further divided and explored to model predicted habitats for the chacma clades during different stages of the glacial–interglacial cycle. An area of approximately 1,044,000 km² was identified as potentially having been within the environmental core habitat at some stage of the glacial–interglacial cycle. Of this, 63,700 km² of land was predicted to have been core habitat regardless of the stage of the glacial–interglacial cycle. Additionally, rainfall appears to be the environmental variable with the most limiting effect on habitat size. This is true for the current, last glacial maximum and last interglacial environmental conditions. The largest area that remains within the core habitat throughout the last glacial–interglacial cycle is found in the northern provinces of South Africa. The chacma clades appear to interact in a cyclic pattern of expansion and contraction, each clade being more prominent under different environmental conditions. It appears that grey footed chacma habitat periodically extends northward towards the yellow baboon. These findings suggest dynamic and varied progression of the chacma baboon palaeo-distributions.     

Standardization of Anaesthesia for Radiorenography With Primates Under Laboratory Conditions

The influence of thiopentone intravenous infusion or halothane inhalation on the results of radiorenography was evaluated using, in six chacma baboons (Papio ursinus), ^99mTc-diethyltriamine-pentaacetic acid (DTPA) as scanning agent. The renogram parameters, which depend on the condition of the cardiovascular system, differed significantly for the two anaesthetic agents. Since anaesthesia is necessary in baboon studies for the duration of renogram acquisition, it is imperative to standardize an experimental procedure which will leave the cardiovascular system relatively stable. From this investigation it seemed most appropriate to use as an anaesthetic a constant intravenous infusion of thiopentone.     

Shifts in Climate Foster Exceptional Opportunities for Species Radiation: The Case of South African Geraniums

Climate change is often assumed to be a major driver of biodiversity loss. However, it can also set the stage for novel diversification in lineages with the evolutionary ability to colonize new environments. Here we tested if the extraordinary evolutionary success of the genus Pelargonium was related to the ability of its species to capitalize on the climate niche variation produced by the historical changes in southern Africa. We evaluated the relationship between rates of climate niche evolution and diversification rates in the main Pelargonium lineages and disentangled the roles of deep and recent historical events in the modification of species niches. Pelargonium clades exhibiting higher ecological differentiation along summer precipitation (SPP) gradients also experienced higher diversification rates. Faster rates of niche differentiation in spatially structured variables, along with lower levels of niche overlap among closely related species, suggest recent modification in species niches (e.g. dispersal or range shift) and niche lability. We suggest that highly structured SPP gradients established during the aridification process within southern Africa, in concert with niche lability and low niche overlap, contributed to species divergence. These factors are likely to be responsible for the extensive diversification of other lineages in this diversity hot spot.     

Molecular study of Mhc-DRB in wild chacma baboons reveals high variability and evidence for trans-species inheritance

The MHC class II genes of many primate species were investigated extensively in recent years. However, while Mhc-DRB genes were studied in Old World monkeys such as rhesus macaques, the Mhc-DRB of baboons was only studied in a limited way. Because of their close anatomical and physiological relationship to humans, baboons are often used as models for reproduction and transplantation research. Baboons are also studied as a model species in behavioural ecology. Thus, identification of MHC genes would provide a foundation for studies of Mhc, biology and behaviour. Here, we describe the use of PCR, cloning, denaturing gradient gel electrophoresis (DGGE) and sequencing to identify Mhc-DRB sequences in wild chacma baboons (Papio ursinus). We amplified the highly variable second exon of baboon Mhc-DRB sequences using generic DRB primers. To validate and optimize the DGGE protocol, four DNA samples were initially studied using cloning and sequencing. Clones were screened using a novel RFLP approach to increase the number of clones identified for each individual. Results from cloning and sequencing were used to optimise DGGE conditions for Mhc-DRB genotyping of the remaining study subjects. Using these techniques, we identified 16 Paur-DRB sequences from 30 chacma baboons. On the basis of phylogenetic tree analyses, representatives of the Mhc-DRB1 and Mhc-DRB5 loci, and 13 different DRB lineages were identified. Evidence for trans-species inheritance of some Mhc-DRB sequences comes from high identity between the new Paur-DRB sequences and sequences from Papio cynocephalus, Macaca mulatta and possibly Galago moholi.Nucleotide sequence data reported are available in the GenBank/EMBL/DDBJ databases under the accession numbers DQ339722–DQ339737.     

The Effects of Permanent Injury on the Behavior and Diet of Commensal Chacma Baboons (Papio ursinus) in the Cape Peninsula,South Africa

Primates may suffer injury from both natural (fights with conspecifics, predators) and human-induced (snares, power-lines and guns) causes. Though behavioral flexibility may allow primates to compensate for injuries, permanent disabilities, such as the loss of a limb, may adversely affect both foraging and locomotory efficiency and ultimately the survival and fitness of individuals. In the Cape Peninsula, South Africa, members of the chacma baboon population (Papio ursinus) experience chronic levels of conflict with humans that manifests in high levels (15%) of disabled baboons in groups that overlap with residential areas. In this study we investigate the potential impact of such disabilities by comparing the behavior and diet of disabled baboons with uninjured baboons matched closely for age, sex, and social status from groups of a similar size and composition for 8 mo, from May to December 2005. Disabled baboons spent more time resting and traveling and less time feeding than uninjured baboons. Disabled and uninjured baboons had similar diets but the former consumed fewer food items with high handling costs and fed more on high return foods than the latter. There was no difference in the frequency of grooming or social vigilance behaviors, as might be expected if disability had compromised either competitive ability or predation risk. Further, there was no difference in the survival of disabled or uninjured individuals in each group. Together these results suggest that while permanent injury may affect the behavior and diet of Peninsula baboons, that these constraints may be offset by access to anthropogenic food sources and the lack of natural predators. Disability in baboons may lead to obligate raiding of high-return anthropogenic foods, which is an important challenge for the ongoing management of this population.     

Geophagy in chacma baboons: patterns of soil consumption by age class, sex, and reproductive state

Despite baboons' widespread distribution across Africa, geophagy among all subspecies has been poorly documented. We used video camera traps and soil analyses to investigate geophagy in chacma baboons (Papio cynocephalus ursinus) inhabiting the Western Cape of South Africa. During an 18‐month study, from August 2009 to January 2011, we continually monitored the largest and most frequently visited geophagy sites with camera traps for 545 days and captured soil consumption at one or more sites on 266 of those days (49%). In 3,500 baboon visits to geophagy sites, video camera traps captured 58.6 hr of geophagy. From these data, we evaluated site preference based on time spent consuming soil among these four geophagy sites. One hundred and seventy days of soil consumption data from the most frequently visited geophagy site allowed us to look for demographic trends in geophagy. Selected consumed soils from geophagy sites were analyzed for mineral, physical, and chemical properties. The baboons spent more time consuming white alkaline soils with high percentages of clay and fine silt, which contained higher concentrations of sodium than non‐white acidic soils that contained higher concentrations of iron. Our data indicate that pregnant chacma baboons spent more time consuming soil at monitored geophagy sites than baboons of any other age class, sex, or reproductive state. Based on analytical results, the soils consumed would be effective at alleviating gastrointestinal distress and possibly supplementing minerals for all age/sex classes, but potentially for different age/sex requirements. Am. J. Primatol. 74:48–57, 2012. © 2011 Wiley‐Liss, Inc.     

Capture-release field observations of free-ranging chacma baboons,Papio ursinus,focusing on the behaviour of the sub-adult male segment of the baboon social unit

An adult female and three age-graded male chacma baboons,Papio ursinus, were captured and then artificially introduced into a recipient troop of free-ranging baboons of the same species. Two of the transplanted individuals, the youngest juvenile male and the sub-adult male, were accepted into the troop while the oldest juvenile male and the adult female were aggressively chased off by the sub-adult and adult males of the troop, and they subsequently returned more than 10 km to their home troop. Acceptance of the first two individuals was dependent on the gradual reduction of aggressive behaviour of the sub-adult males. This suggested that successful troop transfers in the wild, occurring more frequently than traditionally believed, may be at least partially contingent on the behaviour of the sub-adult male segment of the baboon social unit. Supported by a Graduate Research Grant from the University of Cape Town.     

Pleistocene Niche Stability and Lineage Diversification in the Subtropical Spider Araneus omnicolor (Araneidae)

The influence of Quaternary climate oscillations on the diversification of the South American fauna is being increasingly explored. However, most of these studies have focused on taxa that are endemic to tropical environments, and relatively few have treated organisms restricted to subtropical biomes. Here we used an integrative phylogeographical framework to investigate the effects of these climate events on the ecological niche and genetic patterns of the subtropical orb-weaver spider Araneus omnicolor (Araneidae). We analyzed the mitochondrial (Cytochrome Oxidase I, COI) and nuclear (Internal Transcribed Subunit II, ITS2) DNA of 130 individuals throughout the species’ range, and generated distribution models in three different climate scenarios [present, Last Glacial Maximum (LGM), and Last Interglacial Maximum (LIG)]. Additionally, we used an Approximate Bayesian Computation (ABC) approach to compare possible demographic scenarios and select the hypothesis that better explains the genetic patterns of A. omnicolor. We obtained high haplotype diversity but low nucleotide variation among sequences. The population structure and demographic analyses showed discrepancies between markers, suggesting male-biased dispersal in the species. The time-calibrated COI phylogenetic inference showed a recent diversification of lineages (Middle/Late Pleistocene), while the paleoclimate modeling indicated niche stability since ~120 Kya. The ABC results agreed with the niche models, supporting a panmictic population as the most likely historical scenario for the species. These results indicate that A. omnicolor experienced no niche or population reductions during the Late Pleistocene, despite the intense landscape modifications that occurred in the subtropical region, and that other factors beside LGM and LIG climate oscillations might have contributed to the demographic history of this species. This pattern may be related to the high dispersal ability and wide environmental tolerance of A. omnicolor, highlighting the need for more phylogeographical studies with invertebrates and other generalist taxa, in order to understand the effects of Quaternary climate changes on Neotropical biodiversity.     

Baboon phylogeny as inferred from complete mitochondrial genomes

Baboons (genus Papio) are an interesting phylogeographical primate model for the evolution of savanna species during the Pleistocene. Earlier studies, based on partial mitochondrial sequence information, revealed seven major haplogroups indicating multiple para‐ and polyphylies among the six baboon species. The most basal splits among baboon lineages remained unresolved and the credibility intervals for divergence time estimates were rather large. Assuming that genetic variation within the two studied mitochondrial loci so far was insufficient to infer the apparently rapid early radiation of baboons we used complete mitochondrial sequence information of ten specimens, representing all major baboon lineages, to reconstruct a baboon phylogeny and to re‐estimate divergence times. Our data confirmed the earlier tree topology including the para‐ and polyphyletic relationships of most baboon species; divergence time estimates are slightly younger and credibility intervals narrowed substantially, thus making the estimates more precise. However, the most basal relationships could not be resolved and it remains open whether (1) the most southern population of baboons diverged first or (2) a major split occurred between southern and northern clades. Our study shows that complete mitochondrial genome sequences are more effective to reconstruct robust phylogenies and to narrow down estimated divergence time intervals than only short portions of the mitochondrial genome, although there are also limitations in resolving phylogenetic relationships. Am J Phys Anthropol, 2013. © 2012 Wiley Periodicals, Inc.     

Nonlethal management of baboons on the urban edge of a large metropole

The transformation of natural land for agricultural and urban use has displaced baboons from large parts of their historical distribution. Abundant resources within transformed areas, however, continue to attract baboons back into these human-dominated areas resulting in chronic levels of conflict throughout much of Africa. In the city of Cape Town, chacma baboons (Papio ursinus) have been raiding human-derived foods for over 200 years. In the last 20 years, the management of this conflict has shifted from predominantly lethal to nonlethal methods. In this study, we assess the success of field rangers to deter baboons from urban areas and investigate whether such management affects the diet and activity patterns of baboons. We opportunistically sampled baboon behavior and movement when field rangers were temporarily absent from managed troops in 2008. We also compared the intensity of baboon management by comparing one troop on days when the field rangers aggressively herded the troop away from the urban edge versus passively monitored them in 2004/2005. Our results reveal that when field rangers were absent, the two troops spent 70% and 80% of their time within the urban edge compared to 3% and 19% when they were present. Both troops also consumed more human-derived foods when field rangers were absent. There was no significant change in the activity budget or daily distance traveled for either troop with and without field rangers. The intensity of herding did have an impact on baboon activity and high levels of herding significantly reduced time spent feeding and increased time spent traveling, socializing, and resting. Habitat use and dietary composition did not differ between high- and low-herding days. Our results suggest that field rangers are a successful nonlethal method for reducing spatial overlap between baboons and urban areas but that intensive, unsystematic herding of the troop does have measurable impacts on behavior and should be prevented.     

The historical biogeography of Scabiosa (Dipsacaceae): implications for Old World plant disjunctions

Aim To reconstruct the temporal and biogeographical history of Old World disjunctions in Scabiosa (Dipsacaceae) and the timing of diversification in the Mediterranean Basin, in order to evaluate the importance of biogeographical and climatological history (particularly the onset of a mediterranean climate) in shaping Scabiosa distributions. Location Europe and the Mediterranean Basin, southern Africa and eastern Asia. Methods This study uses maximum‐likelihood and Bayesian phylogenetic analyses of chloroplast DNA (atpB–rbcL, trnL–trnF, trnS–trnG, psbA–trnH) and nuclear ribosomal DNA [internal transcribed spacer (ITS) and external transcribed spacer (ETS)] from 24 out of c. 37 ingroup taxa, beast molecular dating, and the dispersal–extinction–cladogenesis method (Lagrange ) to reconstruct ancestral geographical ranges and the timing of diversification of the major clades of Scabiosa. Results Biogeographical and divergence time reconstructions showed that Scabiosa originated during the Miocene and diversified in Europe, followed by independent movements into Asia and Africa. Several of the major clades were inferred to have radiated sometime between the late Miocene and early Pleistocene, a timeframe that encompasses the onset of the mediterranean climate in Europe. More recent middle–late Pleistocene radiations in the Mediterranean Basin and southern Africa have played a large role in Scabiosa diversification. Main conclusions Members of Scabiosa appear to have capitalized on adaptations to montane and/or dry conditions in order to colonize similar habitats in different biogeographical regions. The formation of the East African Rift mountains is potentially of great importance in explaining the southward migration of Scabiosa. The initial diversification of Scabiosa in Europe during the Miocene is not consistent with the initiation of the mediterranean climate, but may instead be associated with increased aridity and the retreat of subtropical lineages during this time. However, the radiation of some of the major subclades within Scabiosa may have been associated with an emerging mediterranean climate. More recent and rapid radiations in both the Mediterranean Basin and southern Africa highlight the probable importance of Pleistocene climate fluctuations in Scabiosa diversification.     

Phylogeography of the heavily poached African common pangolin (Pholidota,Manis tricuspis) reveals six cryptic lineages as traceable signatures of Pleistocene diversification

Knowledge on faunal diversification in African rainforests remains scarce. We used phylogeography to assess (i) the role of Pleistocene climatic oscillations in the diversification of the African common pangolin (Manis tricuspis) and (ii) the utility of our multilocus approach for taxonomic delineation and trade tracing of this heavily poached species. We sequenced 101 individuals for two mitochondrial DNA (mtDNA), two nuclear DNA and one Y‐borne gene fragments (totalizing 2602 bp). We used a time‐calibrated, Bayesian inference phylogenetic framework and conducted character‐based, genetic and phylogenetic delineation of species hypotheses within African common pangolins. We identified six geographic lineages partitioned into western Africa, Ghana, the Dahomey Gap, western central Africa, Gabon and central Africa, all diverging during the Middle to Late Pleistocene. MtDNA (cytochrome b + control region) was the sole locus to provide diagnostic characters for each of the six lineages. Tree‐based Bayesian delimitation methods using single‐ and multilocus approaches gave high support for ‘species’ level recognition of the six African common pangolin lineages. Although the diversification of African common pangolins occurred during Pleistocene cyclical glaciations, causative correlation with traditional rainforest refugia and riverine barriers in Africa was not straightforward. We conclude on the existence of six cryptic lineages within African common pangolins, which might be of major relevance for future conservation strategies. The high discriminative power of the mtDNA markers used in this study should allow an efficient molecular tracing of the regional origin of African common pangolin seizures.     

Factors Influencing the Ranging Behavior of Chacma Baboons (Papio hamadryas ursinus) Living in a Human-Modified Habitat

The introduction and eradication of alien invasive plant species potentially alters feeding and spatial ecology of wild primates. We investigated whether the removal of an important dietary resource for wild chacma baboons (Papio hamadryas ursinus), black wattle (Acacia mearnsii), from a nature reserve would result in longer daily path lengths (DPLs) and greater movement toward other resources, specifically alternative black wattle stands outside the reserve, agricultural plots, and sleeping and geophagy sites. We fitted a juvenile male baboon with a self-releasing GPS collar to track the focal troop’s movements on Wildcliff Nature Reserve and adjacent properties, located in the Western Cape, South Africa, from January 25, 2010 to January 18, 2011. During this time, Working for Water, an environmental conservation initiative of the South African Department of Water Affairs, removed black wattle from the baboons’ home range. We estimated monthly home range (5.30–20.58?km²) and DPL (1.7–11.7?km) and quantified the baboons’ use of five dominant vegetation types. Our vegetation use-availability analysis indicated that the troop preferred black wattle, Afromontane forests, and, to a lesser extent, pasture, but used agricultural plots and fynbos less than expected by availability. With increasing black wattle removal in the core area, the troop traveled further toward distant sources of black wattle, using sleeping sites out of their core area to accommodate such long day journeys. A general linear model indicated that movement to black wattle stands, as well as changing sleeping sites, day length, and both spring and winter seasons all significantly increased DPL. We suggest the influence that alien invasive species and their eradication has on ranging behavior should be a consideration in primate conservation and management policies.     

Diversification in the Mexican horned lizard Phrynosoma orbiculare across a dynamic landscape

The widespread montane Mexican horned lizard Phrynosoma orbiculare (Squamata: Phrynosomatidae) represents an ideal species to investigate the relative impacts of Neogene vicariance and Quaternary climate change on lineage diversification across the Mexican highlands. We used mitochondrial DNA to examine the maternal history of P. orbiculare and estimate the timing and tempo of lineage diversification. Based on our results, we inferred 11 geographically structured, well supported mitochondrial lineages within this species, suggesting P. orbiculare represents a species complex. Six divergences between lineages likely occurred during the Late Miocene and Pliocene, and four splits probably happened during the Pleistocene. Diversification rate appeared relatively constant through time. Spatial and temporal divergences between lineages of P. orbiculare and co-distributed taxa suggest that a distinct period of uplifting of the Transvolcanic Belt around 7.5-3 million years ago broadly impacted diversification in taxa associated with this mountain range. To the north, several river drainages acting as filter barriers differentially subdivided co-distributed highland taxa through time. Diversification patterns observed in P. orbiculare provide additional insight into the mechanisms that impacted differentiation of highland taxa across the complex Mexican highlands.     

Infanticide in a chacma baboon troop

This report describes an infanticide and two attacks of an infant and a juvenile by a natal adult male in a troop of chacma baboons (Papio ursinus). The infanticidal male had become the dominant male in his troop five months before the infanticide suggesting that a trigger for infanticidal behavior is a rise in rank to dominant status.     

Refugial isolation and divergence in the Narrowheaded Gartersnake species complex (Thamnophis rufipunctatus) as revealed by multilocus DNA sequence data

Glacial–interglacial cycles of the Pleistocene are hypothesized as one of the foremost contributors to biological diversification. This is especially true for cold‐adapted montane species, where range shifts have had a pronounced effect on population‐level divergence. Gartersnakes of the Thamnophis rufipunctatus species complex are restricted to cold headwater streams in the highlands of the Sierra Madre Occidental and southwestern USA. We used coalescent and multilocus phylogenetic approaches to test whether genetic diversification of this montane‐restricted species complex is consistent with two prevailing models of range fluctuation for species affected by Pleistocene climate changes. Our concatenated nuDNA and multilocus species analyses recovered evidence for the persistence of multiple lineages that are restricted geographically, despite a mtDNA signature consistent with either more recent connectivity (and introgression) or recent expansion (and incomplete lineage sorting). Divergence times estimated using a relaxed molecular clock and fossil calibrations fall within the Late Pleistocene, and zero gene flow scenarios among current geographically isolated lineages could not be rejected. These results suggest that increased climate shifts in the Late Pleistocene have driven diversification and current range retraction patterns and that the differences between markers reflect the stochasticity of gene lineages (i.e. ancestral polymorphism) rather than gene flow and introgression. These results have important implications for the conservation of T. rufipunctatus (sensu novo), which is restricted to two drainage systems in the southwestern US and has undergone a recent and dramatic decline.     

Progressions of adult male chacma baboons (Papio ursinus) in the moremi wildlife reserve

It has been suggested that the sociospatial organization of baboon progressions has a protective function in which the most physically powerful troop members, the adult males, play a key role. This theory implies regularities in adult male progression order for different species of savannah baboons with similar social systems. Quantitative progression data are available from two such similar baboon species, olive and yellow, but not from the third, chacma. The order of movement of 15 adult male chacma baboons was determined from 40 progressions observed at the Moremi Wildlife Reserve, Botswana. The chacma males were most often found in the front sixth of progressions, next most often in the second sixth, and about equally often from there to the rear. As expected from the protection theory, this frontal positioning is consistent with available quantitative data from other species of savannah baboons.