Biocide resistance mechanisms

Information about the mechanisms of action and resistance of biocides used as preservatives, sanitizers, and disinfectants continues to accumulate. While biocides are generally not as well-studied as antibiotics, it is becoming clear that bacteria employ the same major resistance strategies against both groups of antibacterial chemicals. The resistance strategies—inhibitor inactivation, target site alteration, and target site exclusion—are described in the context of the presumed mechanisms of action of the biocides using examples drawn from the literature.     

Selectivity-Enhancement of Hydrolase Reactions

This review pinpoints the strategies which can be employed to improve the enantio- and diasteroselectivity of hydrolytic enzymes, i.e. esterases, proteases, and lipases. The influence of variations of reactants, — enzyme and substrate — and conditions — kinetics, medium, temperature, pH — on the chiral recognition process of the enzyme is discussed with examples from the recent literature.     

Metabolic defence against oxidative stress: the road less travelled so far

Bacteria have survived, and many have thrived, since antiquity in the presence of the highly‐reactive chalcogen—oxygen (O₂). They are known to evoke intricate strategies to defend themselves from the reactive by‐products of oxygen—reactive oxygen species (ROS). Many of these detoxifying mechanisms have been extensively characterized; superoxide dismutase, catalases, alkyl hydroperoxide reductase and the glutathione (GSH)‐cycling system are responsible for neutralizing specific ROS. Meanwhile, a pool of NADPH—the reductive engine of many ROS‐combating enzymes—is maintained by metabolic enzymes including, but not exclusively, glucose‐6 phosphate dehydrogenase (G6PDH) and NADP‐dependent isocitrate dehydrogenase (ICDH‐NADP). So, it is not surprising that evidence continues to emerge demonstrating the pivotal role metabolism plays in mitigating ROS toxicity. Stemming from its ability to concurrently decrease the production of the pro‐oxidative metabolite, NADH, while augmenting the antioxidative metabolite, NADPH, metabolism is the fulcrum of cellular redox potential. In this review, we will discuss the mounting evidence positioning metabolism and metabolic shifts observed during oxidative stress, as critical strategies microbes utilize to thrive in environments that are rife with ROS. The contribution of ketoacids—moieties capable of non‐enzymatic decarboxylation in the presence of oxidants—as ROS scavengers will be elaborated alongside the metabolic pathways responsible for their homeostases. Further, the signalling role of the carboxylic acids generated following the ketoacid‐mediated detoxification of the ROS will be commented on within the context of oxidative stress.     

Neighborhood Context,SES, and Parenting: Including a Focus on Acculturation Among Latina Mothers

This study examines the influence of contextual factors on parenting strategies among a sample of 104 Latina, European American, and African American mother–child pairs. The parenting constructs under investigation were selected as part of a collaborative research project among members of the parenting subgroup of the Study Group on Race, Culture, and Ethnicity (SCGCE). Hierarchical regression analyses, predicting parenting outcomes, were conducted with mothers' ethnicity entered in the first step and contextual variables (mothers' annual income, education, subjective neighborhood rating, and stressful life events) entered second. While there were no significant differences in parenting strategies (parental efficacy, parental monitoring, parental warmth, and psychological control) across the three pan-ethnic groups, a contextual variable— subjective neighborhood quality—was associated with mothers' sense of parental efficacy and use of psychological control. Among our subsample of 54 Latina mothers, level of acculturation was similarly related to parental sense of self-efficacy and psychological control strategies.     

Evolution of acuteness in pathogen metapopulations: conflicts between “classical” and invasion-persistence trade-offs

Classical life-history theory predicts that acute, immunizing pathogens should maximize between-host transmission. When such pathogens induce violent epidemic outbreaks, however, a pathogen’s short-term advantage at invasion may come at the expense of its ability to persist in the population over the long term. Here, we seek to understand how the classical and invasion-persistence trade-offs interact to shape pathogen life-history evolution as a function of the size and structure of the host population. We develop an individual-based infection model at three distinct levels of organization: within an individual host, among hosts within a local population, and among local populations within a metapopulation. We find a continuum of evolutionarily stable pathogen strategies. At one end of the spectrum—in large well-mixed populations—pathogens evolve to greater acuteness to maximize between-host transmission: the classical trade-off theory applies in this regime. At the other end of the spectrum—when the host population is broken into many small patches—selection favors less acute pathogens, which persist longer within a patch and thereby achieve enhanced between-patch transmission: the invasion-persistence trade-off dominates in this regime. Between these extremes, we explore the effects of the size and structure of the host population in determining pathogen strategy. In general, pathogen strategies respond to evolutionary pressures arising at both scales.     

The time is now: moving toward virus-specific T cells after allogeneic hematopoietic stem cell transplantation as the standard of care

Adoptive immunotherapy—in particular, T-cell therapy—has recently emerged as a useful strategy with the potential to overcome many of the limitations of antiviral drugs for the treatment of viral complications after hematopietic stem cell transplantation. In this review, we briefly summarize the current methods for virus-specific T-cell isolation or selection and we report results from clinical trials that have used these techniques, focusing specifically on the strategies aimed to broaden the application of this technology.     

Evolutionary biology and psychiatry: The case of anorexia nervosa

A review of the literature and an analysis of 19 case histories suggest that evolutionary mechanisms such as reproductive suppression, kin selection, and parental manipulation are involved in the development of anorexia nervosa. From this perspective, anorexia nervosa is viewed as—in some cases—an adaptive feature of human reproductive strategies and may be best understood as an emergency strategy that is pursued whenever the sovereign handling of one's own reproductive potential is not possible because of socioecological or ontogenetic constraints.     

Strategies to Guide the Return of Genomic Research Findings: An Australian Perspective

In Australia, along with many other countries, limited guidance or other support strategies are currently available to researchers, institutional research ethics committees, and others responsible for making decisions about whether to return genomic findings with potential value to participants or their blood relatives. This lack of guidance results in onerous decision-making burdens—traversing technical, interpretative, and ethical dimensions—as well as uncertainty and inconsistencies for research participants. This article draws on a recent targeted consultation conducted by the Australian National Health and Medical Research Council to put forward strategies for supporting return of finding decision-making. In particular, we propose a pyramid of decision-making support: decision-making guidelines, technical and interpretative assistance, and ethical assistance for intractable “tough” cases. Each step of the pyramid involves an increasing level of regulatory involvement and applies to a smaller subsection of genomic research findings. Implementation of such strategies would facilitate a growing evidence base for return of finding decisions, thereby easing the financial, time, and moral burdens currently placed on researchers and other relevant decision-makers while also improving the quality of such decisions and, consequently, participant outcomes.     

Land‐use strategies to balance livestock production,biodiversity conservation and carbon storage in Yucatán,Mexico

Balancing the production of food, particularly meat, with preserving biodiversity and maintaining ecosystem services is a major societal challenge. Research into the contrasting strategies of land sparing and land sharing has suggested that land sparing—combining high‐yield agriculture with the protection or restoration of natural habitats on nonfarmed land—will have lower environmental impacts than other strategies. Ecosystems with long histories of habitat disturbance, however, could be resilient to low‐yield agriculture and thus fare better under land sharing. Using a wider suite of species (birds, dung beetles and trees) and a wider range of livestock‐production systems than previous studies, we investigated the probable impacts of different land‐use strategies on biodiversity and aboveground carbon stocks in the Yucatán Peninsula, Mexico—a region with a long history of habitat disturbance. By modelling the production of multiple products from interdependent land uses, we found that land sparing would allow larger estimated populations of most species and larger carbon stocks to persist than would land sharing or any intermediate strategy. This result held across all agricultural production targets despite the history of disturbance and despite species richness in low‐ and medium‐yielding agriculture being not much lower than that in natural habitats. This highlights the importance, in evaluating the biodiversity impacts of land use, of measuring population densities of individual species, rather than simple species richness. The benefits of land sparing for both biodiversity and carbon storage suggest that safeguarding natural habitats for biodiversity protection and carbon storage alongside promoting areas of high‐yield cattle production would be desirable. However, delivering such landscapes will probably require the explicit linkage of livestock yield increases with habitat protection or restoration, as well as a deeper understanding of the long‐term sustainability of yields, and research into how other societal outcomes vary across land‐use strategies.     

Assessing the impact of the CPU power-saving modes on the task-parallel solution of sparse linear systems

We investigate the benefits that an energy-aware implementation of the runtime in charge of the concurrent execution of ILUPACK—a sophisticated preconditioned iterative solver for sparse linear systems—produces on the time-power-energy balance of the application. Furthermore, to connect the experimental results with the theory, we propose several simple yet accurate power models that capture the variations of average power that result from the introduction of the energy-aware strategies as well as the impact of the P-states into ILUPACK’s runtime, at high accuracy, on two distinct platforms based on multicore technology from AMD and Intel.     

Temporal genetic dynamics of reintroduced and translocated populations of the endangered golden lion tamarin (<Emphasis Type="Italic">Leontopithecus rosalia</Emphasis>)

Reintroductions—captive-born animals introduced into the species’ original distribution area—and translocations—free-living animals transferred to another location within the historical distribution area—are important conservation strategies for endangered species. Genetic analyses of 239 individuals from unmanaged, translocated and reintroduced populations of Leontopithecus rosalia were performed using 14 microsatellites. These samples were collected during two periods: (a) 1996–1997 (historic), when individuals were translocated and reintroduced into forest fragments in the lowland Atlantic Forest, and (b) 2007–09 (recent). We hypothesized that effective population size and genetic diversity would increase over time and that these management strategies would affect the resulting population genetic structure. We found trends indicating that the effective population size at the translocation site increased while that at the reintroduction sites diminished over time. The inbreeding coefficient of the translocated population diminished over time (from 0.38 to 0.03) and was much lower than that of the native (0.29) and reintroduced (0.13) recent populations. We observed a greater genetic admixture among the reintroduced sites on the historic sampling, as well as a strong genetic structure at the translocation site. In the recent sampling, the population structuring became more site-related suggesting low or inconsistent gene flow between sampling sites. This research highlights how conservation management decisions have an important influence on the genetic outcome of translocations and reintroductions. Future conservation planning should consider population genetic monitoring before and after management measures and maintain population connectivity thereafter to avoid the negative effects of a population size reduction.     

Evolution of sensory systems

Sensory systems evolve and enable organisms to perceive their sensory Umwelt, the unique set of cues relevant for their survival. The multiple components that comprise sensory systems — the receptors, cells, organs, and dedicated high-order circuits — can vary greatly across species. Sensory receptor gene families can expand and contract across lineages, resulting in enormous sensory diversity. Comparative studies of sensory receptor function have uncovered the molecular basis of receptor properties and identified novel sensory receptor classes and noncanonical sensory strategies. Phylogenetically informed comparisons of sensory systems across multiple species can pinpoint when sensory changes evolve and highlight the role of contingency in sensory system evolution.     

The Concept of City Carbon Maps: A Case Study of Melbourne,Australia

Cities are thought to be associated with most of humanity's consumption of natural resources and impacts on the environment. Cities not only constitute major centers of economic activity, knowledge, innovation, and governance—they are also said to be linked to approximately 70% to 80% of global carbon dioxide emissions. This makes cities primary agents of change in a resource‐ and carbon‐constraint world. In order to set meaningful targets, design successful policies, and implement effective mitigation strategies, it is important that greenhouse gas (GHG) emissions accounting for cities is accurate, comparable, comprehensive, and complete. Despite recent developments in the standardization of city GHG accounting, there is still a lack of consistent guidelines regarding out‐of‐boundary emissions, thus hampering efforts to identify mitigation priorities and responsibilities. We introduce a new conceptual framework—based on environmental input‐output analysis—that allows for a consistent and complete reconciliation of direct and indirect GHG emissions from a city. The “city carbon map” shows local, regional, national, and global origins and destinations of flows of embodied emissions. We test the carbon map concept by applying it to the greater metropolitan area of Melbourne, Australia. We discuss the results and limitations of the approach in the light of possible mitigation strategies and policies by different urban stakeholders.     

The importance of rapid, disturbance-induced losses in carbon management and sequestration

Management of terrestrial carbon fluxes is being proposed as a means of increasing the amount of carbon sequestered in the terrestrial biosphere. This approach is generally viewed only as an interim strategy for the coming decades while other longer‐term strategies are developed and implemented — the most important being the direct reduction of carbon emissions. We are concerned that the potential for rapid, disturbance‐induced losses may be much greater than is currently appreciated, especially by the decision‐making community. Here we wish to: (1) highlight the complex and threshold‐like nature of disturbances — such as fire and drought, as well as the erosion associated with each — that could lead to carbon losses; (2) note the global extent of ecosystems that are at risk of such disturbance‐induced carbon losses; and (3) call for increased consideration of and research on the mechanisms by which large, rapid disturbance‐induced losses of terrestrial carbon could occur. Our lack of ability as a scientific community to predict such ecosystem dynamics is precluding the effective consideration of these processes into strategies and policies related to carbon management and sequestration. Consequently, scientists need to do more to improve quantification of these potential losses and to integrate them into sound, sustainable policy options.     

Evolution of regulated phenotypic expression during a transition to multicellularity

Multicellular organisms coordinate growth and differentiation from single cell starting points with developmental programs. While the evolutionary origins of these programs are unknown, it is likely that they are closely tied to the evolution of regulated—not stochastic—phenotypic expression. To determine how such regulation might arise, we consider experimental populations of Pseudomonas fluorescens which evolved stochastic switching in the lab. This switching is directly coupled with environmental oscillations generated by the bacteria themselves. This unique example of niche construction provides reliable information that organisms may incorporate into regulation of phenotypes. We use mathematical models to investigate the success of two forms of regulation that rely on sensing either external or internal information. We find that both strategies can outcompete stochastic strategies for certain combinations of parameters. In particular, external sensing mechanisms are very effective over a large range of parameter space—including parameters that correspond to poor sensing of the extracellular signal and gradual responses. We show with evolutionary simulations that this robustness makes them more likely to evolve from initially stochastically switching populations rather than internal sensing mechanisms which require more tuning of parameters. These results demonstrate that, within this oscillating system, if regulatory mechanisms can evolve to incorporate environmental information then their selective advantage is sufficient for them to fix in the population.     

Ecology and migration patterns of solitary red locusts,Nomadacris septemfasciata (Serville) (Orthoptera: Acrididae) in southwestern Madagascar

Red locusts frequently cause crop damage in Madagascar. This problem has worsened in recent years, likely due to the intensive deforestation that is under way. Little is known about this locust In Madagascar, contrary to continental Africa. Several studies have been carried out in southwestern Madagascar, where locust damage is regularly reported, with the aim of determining the cause of recent outbreaks and improving control strategies—they included surveys of rural inhabitants and an analysis of over 25 years of archival data at the Centre national antiacridien (Malagasy locust control centre). The results revealed several zones between which the red locust—a single-generation species that undergoes imaginal diapause in the dry season—seasonally migrates on a northeast to southwest track, and vice versa, depending on rainfall and wind patterns. The migration dynamics and interannual variations associated with rainfall irregularity certainly partially account for the recurrence of red locust outbreaks in Madagascar.     

Variation strategies of plants in heterogeneous environments

Plant structures exhibit five principal classes of variation in heterogeneous environments, namely uniformity, continuous lability, genetic specialization (polymorphism), environmentally- or statuscued alternatives (conditional choices) and multiple strategies—the simultaneous operation by one plant of distinct types of structures that perform the same function. Multiple strategies are a diverse but neglected class that includes simultaneous cosexuality (hermaphroditism and other monomorphic sex conditions), facultative cleistogamy, heteromorphic diaspores, and reproduction by both seeds and ramets. An analysis of seven functions in the angiosperm flora of New Zealand shows that uniform and labile strategies considered jointly are most common, and multiple strategies are more common than either polymorphisms or conditional choices. Phenotypic models of the natural selection of structural variation are presented. They predict the general conditions under which multiple, conditional and uniform strategies are selected when the environment is spatially heterogeneous for either parents or their offspring. The models can explain many features of variation strategies, including why multiple strategies are a plant speciality, why conditional strategies such as sex choosing are rare and random choices are even more rare (unknown?), and why some self-fertilizing plants have distinct cleistogamous flowers. The models also suggest further avenues of research.     

“Fast” women? The effects of childhood environments on women's developmental timing,mating strategies,and reproductive outcomes

The fast-slow paradigm of life history theory has been a popular approach to individual differences in the evolutionary behavioral sciences. Currently, however, the fast-slow paradigm faces several theoretical and empirical challenges. Motivated by questions regarding the validity of certain assumptions of the paradigm, the current study provides an empirical investigation of human female “fast” versus “slow” strategies. In a sample of 1867 women recruited using MTurk, we use structural equation modeling (SEM) to test whether childhood exposure to different environmental variables had unique effects on proposed life history traits, whether mediated by—or independent of—pubertal timing. Models also test whether the proposed life history traits covary with one another as expected by the paradigm. Data reveal that exposure to violence and poor health in particular, but not environmental harshness or unpredictability in general, had significant effects on pubertal timing. Pubertal timing appeared to mediate effects of childhood environments on age at sexual debut, but not any other adult outcome (e.g., sociosexual orientations, reproductive outcomes). Some associations with mating strategies were incompatible with assumptions of the prevailing fast-slow paradigm; for instance, greater short-term mating orientation was positively associated with childhood socioeconomic status and negatively associated with offspring number. These results highlight the need for a new or revised theoretical approach to understanding developmental, mating, and reproductive strategies.     

Virus–Receptor Interactions: The Key to Cellular Invasion

Virus–receptor interactions play a key regulatory role in viral host range, tissue tropism, and viral pathogenesis. Viruses utilize elegant strategies to attach to one or multiple receptors, overcome the plasma membrane barrier, enter, and access the necessary host cell machinery. The viral attachment protein can be viewed as the “key” that unlocks host cells by interacting with the “lock”—the receptor—on the cell surface, and these lock-and-key interactions are critical for viruses to successfully invade host cells. Many common themes have emerged in virus–receptor utilization within and across virus families demonstrating that viruses often target particular classes of molecules in order to mediate these events. Common viral receptors include sialylated glycans, cell adhesion molecules such as immunoglobulin superfamily members and integrins, and phosphatidylserine receptors. The redundancy in receptor usage suggests that viruses target particular receptors or “common locks” to take advantage of their cellular function and also suggests evolutionary conservation. Due to the importance of initial virus interactions with host cells in viral pathogenesis and the redundancy in viral receptor usage, exploitation of these strategies would be an attractive target for new antiviral therapeutics.