Natural interploidy hybridization among the key taxa involved in the origin of horticultural chrysanthemums

Understanding hybridization and introgression between natural plant populations can give important insights into the origins of cultivated species. Recent studies suggest differences in ploidy might not create such strong reproductive barriers as once thought, and thus studies into cultivated origins should examine all co-occurring taxa, including those with contrasting ploidy levels. Here, we characterized hybridization between Chrysanthemum indicum L., Chrysanthemum vestitum (Hemsley) Ling and Chrysanthemum vestitum var. latifolium (Zhou & Chen), the most important wild species involved in the origins of cultivated chrysanthemums. We analyzed the population structure of 317 Chrysanthemum accessions based on 13 microsatellite markers and sequenced chloroplast trnL-trnF for a subset of 103 Chrysanthemum accessions. We identified three distinct genetic clusters, corresponding to the three taxa. We detected 20 hybrids between species of different ploidy levels, of which 19 were between C. indicum (4x) and C. vestitum (6x) and one was between C. indicum and C. vestitum var. latifolium (6x). Fourteen hybrids between C. indicum and C. vestitum were from one of the five study sites. Chrysanthemum vestitum and C. vestitum var. latifolium share only one chloroplast haplotype. The substantially different number of hybrids between hybridizing species was likely due to different levels of reproductive isolation coupled with environmental selection against hybrids. In addition, human activities could play a role in the different patterns of hybridization among populations.     

HS-SPME-GC-MS法分析3种块菌子囊果主要挥发性成分

本研究采用顶空-固相微萃取结合气相色谱-质谱联用技术(HS-SPME-GC-MS)比较分析了假喜马拉雅块菌Tuber pseudohimalayense、中华夏块菌T. sinoaestivum和印度块菌T. indicum子囊果主要挥发性有机化合物(volatile organic compounds,VOCs)组成与含量。结果表明,在3种块菌子囊果中共鉴定到173种VOCs,其中假喜马拉雅块菌、中华夏块菌和印度块菌子囊果中分别检测到79、63和71种挥发性成分,3种块菌子囊果中共有成分11种,其中1-辛烯-3-醇是含量最高的共有化合物(39.52%、38.98%和8.46%)。利用挥发性成分对3种块菌种类进行判别分析,结果表明2-丁酮、庚醛、苯乙烯、1-辛烯-3-醇和环十四烷能100.0%地将3种块菌样品按照种类正确分类。本研究初步确定了3种块菌子囊果VOCs组成和含量的差异,并探究了用VOCs相对含量区分3种块菌种类的可行性,为我国块菌质量评价,尤其是加工的块菌商品的鉴别提供了重要的理论依据。     

西藏东南部柏木属群落类型及物种多样性

西藏东南部柏木属植物群落是青藏高原天然林资源的重要组分,在维持高原生物多样性与生态安全方面作用显著.为明确其群落类型及物种多样性,本研究通过在米林县、朗县和波密县设置典型样地和划分群落类型,分析了不同群落物种组成、物种多样性指数及建群种径级结构.结果表明: 柏木属植物群落可划分为4个群落类型:西藏柏木-柳叶忍冬+绒毛山梅花-凤尾蕨+紫马唐群落(群落Ⅰ)、巨柏-圆锥山蚂蝗+砂生槐-线形草沙蚕+芸香草+固沙草群落(群落Ⅱ)、巨柏-甘肃野丁香-杂配藜+固沙草群落(群落Ⅲ)、巨柏-小蓝雪花-藏沙蒿+固沙草+蒺藜群落(群落Ⅳ).各群落Margalef丰富度指数、Shannon多样性指数、Pielou均匀度指数及种间相遇机率指数均表现为:群落Ⅰ＞群落Ⅱ＞群落Ⅲ＞群落Ⅳ.4个群落的建群种幼龄级个体多而中老龄级少,植株由幼龄级向中龄级过渡阶段死亡率较高,柏木属植物种群呈衰退趋势.     

辣椒R2R3-MYB转录因子家族的全基因组鉴定与比较进化分析

MYB转录因子作为植物中最大的转录因子家族之一,参与植物的生长、代谢、抵御生物和非生物胁迫等多种生理生化过程。R2R3-MYB是MYB转录因子家族的主要存在形式。辣椒是具有重要经济价值的蔬菜作物,其R2R3-MYB转录因子缺乏系统的研究。从一年生辣椒(Capsicum annuum)、浆果状辣椒(C. baccatum...     

Phylogenetic relationships within Pyrenodesmia sensu lato and the role of pigments in its taxonomic interpretation

Most lichens of the family Teloschistaceae (Ascomycota) produce yellow-orange-red anthraquinone pigments. However, the genus Pyrenodesmia encompasses species in which anthraquinones are absent and replaced by a gray pigment Sedifolia-gray. It was shown recently that these species are related to taxa with both anthraquinones and Sedifolia-gray (Caloplaca xerica group, C. haematites group, and C. cretensis) and to species with a brown pigment instead of both anthraquinones and Sedifolia-gray (C. demissa, C. obscurella, and C. reptans). Nevertheless, relationships between mentioned anthraquinone-containing and anthraquinone-lacking species remained unclear. In total, 8 DNA loci from 41 species were used here to resolve these uncertainties. We concluded that C. demissa, C. obscurella, and C. reptans are rather distant from the core of Pyrenodesmia, and we place them outside of Pyrenodesmia sensu lato. Within Pyrenodesmia sensu lato, three lineages were revealed and recognized on a generic level: the genus Pyrenodesmia sensu stricto (21 species), the genus Kuettlingeria (14 species), which is resurrected here, and the genus Sanguineodiscus (4 species), which is newly described here. The genus Pyrenodesmia includes taxa that never contain anthraquinones, but Sedifolia-gray. It matches with the former C. variabilis group. Taxa of the genera Kuettlingeria and Sanguineodiscus have anthraquinones in their apothecia and Sedifolia-gray in their thalli. The genus Kuettlingeria includes the former C. xerica group plus C. cretensis and C. diphyodes. The genus Sanguineodiscus includes the former C. haematites group and C. bicolor. The identity of Kuettlingeria (Caloplaca) diphyodes was clarified and the name Pyrenodesmia helygeoides was resurrected. Twenty-four new combinations were proposed.     

Etude chimio-taxonomique dans le genre cistus

The composition of 3 species of genus Cistus L. has been analysed and compared: C. labdaniferus L. contains essentially compounds of labdane type, namely labdane-8, 15, 19-triol whose structure has been confirmed; C. monspeliensis L. contains almost exclusively compounds having a new squeleton, the cistane, with a cis-junction of A and B; no cyclic diterpenes have been isolated from C. salvifolius L. which has been found rich in unsaturated aliphatic acids one of which is a mono conjugated triethylenic acid.     

用传统分离培养法和高通量测序技术分析印度块菌子囊果内细菌的群落结构

块菌是重要的经济真菌, 在其生长发育过程中, 细菌扮演了重要角色。本文利用传统分离培养方法和高通量测序技术分析了印度块菌(Tuber indicum)子囊果内细菌的群落结构。共分离得到细菌532株, 根据物种累积曲线, 选取其中的112株细菌进行了16S rRNA基因序列分析, 共鉴定出4属40种, 其中假单胞菌属(Pseudomonas)菌株占所测菌株数的80%, 不动杆菌属(Acinetobacter)占12.5%, 链霉菌属(Streptomyces)占5%, 贪噬菌属(Variovorax)占2.5%。通过对印度块菌子囊果16S rRNA基因的V1-V3区高通量测序分析, 共获得细菌序列9,862条, 分属于7门43属220种, 其中变形菌门、拟杆菌门和放线菌门的物种占总物种数的99.7%, 是印度块菌子囊果内的优势细菌。黄杆菌属(Flavobacterium)、壤霉菌属(Agromyces)、微杆菌属(Microbacterium)、剑菌属(Ensifer)和寡养食单胞菌属(Stenotrophomonas)的物种数占总物种的86.3%, 是印度块菌子囊果内细菌的优势属。研究结果表明, 采用胰蛋白大豆培养基仅分离得到印度块菌子囊果内少数细菌物种, 而采用高通量测序技术分析发现, 印度块菌子囊果内细菌物种种类丰富, 群落结构复杂。     

Iridoid glycosides of Cornus canadensis: a comparison with some other Cornus species

The iridoid glycosides scandoside, scandoside methyl ester, monotropein, and galioside were found in Cornus canadensis from several widely distributed collection sites. Cornin and hastatoside were isolated from C. nuttallii. No iridoids were found in C. stolonifera, that instead yielded cornoside and halleridone, also independent of collection location. The results were compared with previous studies and current phylogenetic work on the genus Cornus.     

Delineation of Chondrus (Gigartinales, Florideophyceae) in China and the origin of C. crispus inferred from molecular data

Complete nuclear ribosomal DNA (nrDNA) internal transcribed spacer (ITS) sequences were obtained for 18 Chondrus populations collected at 15 sites from eight countries worldwide. Pairwise comparisons with the multiple alignment revealed that intraspecific divergences of ITS sequences ranged from 0.3 to 1.8% in C. crispus Stackhouse (except for the entity SVLH from France) and from 0.0 to 0.6% in C. ocellatus Holmes, whereas interspecific divergences in Chondrus varied from 1.4 to 5.0%. Three phylogenetic methods (neighbour joining, maximum parsimony and maximum likelihood) confirmed three main lineages: the North Atlantic lineage containing entities of C. crispus from Canada, France, Germany, England, Portugal, Ireland and Wales; a second lineage comprising three species: C. sp. 1, C. armatus (Harvey) Yamada et Mikami, and C. pinnulatus (Harvey) Okamura from the Northern Pacific; and a third lineage containing just one species: C. ocellatus from the Northern Pacific. Chondrus yendoi Yamada et Mikami separated from other Chondrus species singly. nrDNA ITS data indicate that a previous assignment of C. sp. 2 to Mazzaella japonica (Mikami) Hommersand may be incorrect, and additional evidence is needed to resolve the generic placement of this entity. It is inferred from the nrDNA ITS data that three Chondrus species are presently known in China with two, C. ocellatus and C. nipponicus, in Qingdao and two, C. armatus and C. nipponicus, in Dalian. We hypothesize that the ancestor of North Atlantic C. crispus had a Pacific origin, and that the present distribution of C. crispus in the Atlantic Ocean correlates with a trans-Arctic dispersal and vicariance events associated with Pleistocene glaciation maxima.     

薹草属少花薹草组（莎草科）小坚果形态和微形态及其分类学意义

利用扫描电镜对少花薹草组（Carex sect. Paniceae）27种及4变种（东亚14种4变种,北美13种）小坚果形态与微形态特征进行比较观察。结果表明（：1）所有材料小坚果的形状为倒卵球形和钝三棱状,组内很一致,长度为1.53～3.59 mm,同种不同居群个体差异不显著（P>0.05）。（2）表皮细胞一般为五至七边形,偶有四边形或八边形,丝柄薹草（C. rouyana）不同个体间有变异;垂周璧式样直或微波状;硅质台平,偶有凹或略凸,具1个中心体,C. filipes var. kuzakaiensis和C. filipes var. tremula中偶见2个中心体,无卫星体,这些性状种内稳定。（3）利用表皮细胞形状、硅质台凹凸情况和中心体个数对于区分近似种具有价值,如白马薹草（C. baimaensis）和线柄薹草（C. filipes）,且可以区分一些种下等级,如线柄薹草及其变种var. kuzakaiensis、var. oligostachys和var. tremula。（4）sect. Paniceae s.s.和sect. Laxiflorae小坚果形态和微形态...     

A yeast clade near Candida kruisii uncovered: nine novel Candida species associated with basidioma-feeding beetles

Yeasts similar to Candida kruisii were isolated repeatedly from the digestive tracts of basidioma-feeding beetles, especially nitidulids inhabiting and feeding on a variety of agarics in the southeastern USA and Barro Colorado Island, Panama. Based on the identical sequences of the D1/D2 domains of the LSU rRNA gene (rDNA) and host beetle information, the isolates were grouped into 19 genotypes which varied from C. kruisii by up to 38 nucleotide differences in the D1/D2 region. Phylogenetic analysis of rDNA sequences and phenotypic traits placed the isolates in C. kruisii and in nine undescribed taxa. The new species and type strains are designated as Candida pallodes (NRRL Y-27653^T), C. tritomae (NRRL Y-27650^T), C. panamensis (NRRL Y-27657^T), C. lycoperdinae (NRRL Y-27658^T), C. atbi (NRRL Y-27651^T), C. barrocoloradensis (NRRL Y-27934^T), C. aglyptinia (NRRL Y-27935^T), C. stri (NRRL Y-48063^T), and C. gatunensis (NRRL Y-48064^T). A phylogeny based on analysis of a combined database of sequences of SSU and LSU rDNA and the ITS region showed that the nine new species formed a novel sister clade to C. kruisii that was strongly supported by bootstrap analysis. Candida pallodes, C. tritomae, C. panamensis, and C. lycoperdinae formed one subclade, while C. atbi, C. barrocoloradensis, C. aglyptinia, C. stri, and C. gatunensis formed a second distinct subclade within the larger clade. Candida pallodes and C. atbi showed a strong host specificity to beetle species in the genus Pallodes (Coleoptera: Nitidulidae) collected from a variety of agarics. On the other hand, C. panamensis, C. tritomae, and C. lycoperdinae were associated with several unrelated beetles in Erotylidae, Scarabaeidae, Tenebrionidae, and Curculionidae as well as Lycoperdina ferruginea (Nitidulidae). Candida pallodes, C. tritomae, C. lycoperdinae, and C. atbi have been isolated repeatedly in the USA, while the other five new species have been found only at Barro Colorado Island, Panama.     

夹竹桃灭钉螺效果初报

A laboratory experiment at 20±5℃ shows that the water extract of fresh Nerium indicum had an obvious effect on killing Oncomelania hupensis. Treated with 0.1% water extract for four days, the mortality of O. hupensis was up to 100%. The effect of different tissues of N. indicum on O. hupensis was in order of stem phloem>leaf>root phloem>flower. The effect of N. indicum on O. hupensis was about ten times higher than that of Pterocarya stenoptera and Rumex japonicus, and was equal to that of 1×10^-3mg·L^-1 niclosamidum.     

Microhabitat selection in intertidal gobiid fishes: Species- and size-associated variation

Patterns of space use and the individual-based behaviour of microhabitat selection were investigated in three intertidal gobiid fishes, Bathygobius fuscus, Chaenogobius annularis and C. gulosus, from Kyushu, southern Japan. While the three species tended to occupy slightly different types of tidepool, their patterns of distribution largely overlapped in the field. Laboratory experiments involving choice of shelter (i.e. underneath a stone plate) and four different substrate types were conducted to examine size- and time-related variation in habitat selection. The shelter area was preferred by small- and large-sized C. gulosus (day and night), large C. annularis (day and night) and small C. annularis (daytime only), while no preference was evident in small B. fuscus (day and night) and small C. annularis (night). Patterns of substrate choice also differed among species, size groups and between day and night. Size differences in substrate use were evident in B. fuscus and C. gulosus but not in C. annularis, while diel differences were shown by all species groups except large B. fuscus. The gravel and sand substrates tended to be used more frequently than the bare rock substrate, but the strength of preference of a particular substrate type varied among individuals/species. Our results demonstrate that habitat selection by the three gobiid species is variable depending on species, body size and time of day, which must ultimately bear upon mitigating intra-/interspecific interactions in tidepool environments.     

长白山区苔草泥炭沼泽植物物种多样性

本研究以长白山区典型苔草沼泽为对象,分析了密丛型苔草(瘤囊苔草、乌拉草)沼泽和疏丛型苔草(毛苔草)沼泽的植物物种多样性.结果 表明:3种苔草沼泽植物群落共有83个物种,隶属于36科59属.其中,乌拉草沼泽有71个物种,瘤囊苔草沼泽有61个物种,毛苔草沼泽有26个物种.密丛型苔草沼泽植物物种数和物种丰富度明显高于疏丛型苔...     

Caffeine metabolism in Coffea arabica and other species of coffee

High performance liquid chromatography has been used to measure the quantities of caffeine, theobromine, and theophylline in aqueous extracts of endosperm from immature and mature fruits of Coffea arabica and six other species of Coffea. Caffeine was the alkaloid present in largest amounts and, with one exception, in concentrations that were broadly similar in immature and mature fruit. The highest concentrations of caffeine were found in C. canephora at 35.1 and 24.5 mg g⁻¹, respectively, in immature and mature endosperm. The lowest concentrations were in C. bengalensis, where caffeine was not detected in extracts from mature fruit. [8-³H]Caffeine was metabolised relatively slowly by immature endosperm of C. arabica and C. canephora. In contrast, C. dewevrei, C. eugenioides, C. stenophylla, C. salvatrix and C. bengalensis all appeared to metabolise [8-³H]caffeine much more rapidly, as the percentage recovery of the applied label was much lower and there was more extensive incorporation of radioactivity into theobromine, theophylline, 3-methylxanthine and two unidentified polar metabolites. The endogenous caffeine concentrations and the metabolism data indicate that there may be marked differences in the rate of turnover of caffeine in the various species of Coffea. Potential sources of material for the production of naturally decaffeinated coffee are discussed.     

Acid phosphatases bind to the main high density lipoprotein apolipoprotein A-I

Light-dependent Ca²⁺ efflux via the Ca²⁺/H⁺ antiport in the photosynthetic purple sulfur bacterium Chromatium vinosum was inhibited by three phenothiazines: chlorpromazine; trifluoperazine and phenothiazine. The inhibitors had no effect on Ca²⁺ uptake by C. vinosum in the dark nor any effect on the light-dependent efflux of either Na⁺ or Tl⁺ catalyzed, respectively, by the C. vinosum Na⁺/H⁺ or K⁺/H⁺ antiports. Ruthenium red and LaCl₃, neither of which inhibited light-dependent Ca²⁺ efflux in C. vinosum, markedly inhibited Ca²⁺ uptake in the dark by C. vinosum cells. Ruthenium red had no effect on the uptake of either Na⁺or the K⁺ analog T1⁺ by C. vinosum cells in the dark. These results have been interpreted in terms of two separate Ca²⁺ transport systems in C. vinosum: (i) a phenothiazine-sensitive and ruthenium red, La³⁺-insensitive Ca²⁺/H⁺ antiport responsible for Ca²⁺ efflux in the light; and (ii) a ruthenium red and La³⁺-sensitive but phenothiazine-insensitive Ca²⁺ uptake system.     

Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica

Interspecific hybridization events have played a major role in plant speciation, yet the evolutionary origin of hybrid species often remains enigmatic. Here, we inferred the evolutionary origin of the allotetraploid species Coffea arabica, which is widely cultivated for Arabica coffee production. We estimated genetic distances between C. arabica and all species that are known to be closely related to C. arabica using genotyping-by-sequencing (GBS) data. In addition, we reconstructed a time-calibrated multilabeled phylogenetic tree of 24 species to estimate the age of the C. arabica hybridization event. Ancestral states of self-compatibility were also inferred to shed new light on the evolution of self-compatibility in Coffea. Coffea canephora and C. eugenioides were confirmed as the putative progenitor species of C. arabica. These species most likely hybridized between 1.08 million and 543 000 years ago, coinciding with periods of environmental upheaval, which may have induced range shifts of the progenitor species that facilitated the emergence of C. arabica.     

舌鳎亚科鱼类单系起源和同种异名的线粒体DNA证据

舌鳎亚科鱼类因形态特征的特殊性, 其分类及系统发育关系一直存在争议。本研究测定了中国沿海14种舌鳎亚科鱼类线粒体DNA的16S rRNA和Cyt b基因的部分片段。两个基因构建的舌鳎亚科系统发育树结果显示, 中国沿海舌鳎亚科鱼类为明显的单系群, 但舌鳎亚科鱼类内部的系统发育关系与形态分类划分的亚属并不完全一致, 日本须鳎(Paraplagusis japonica)与其他舌鳎属(Cynoglossus)种类并未形成不同的分支。虽然舌鳎属内的舌鳎亚属(Cynoglossus)、拟舌鳎亚属(Cynoglossoides)和三线舌鳎亚属(Areliscus)均可以聚为独立分支, 但长吻红舌鳎(C. lighti)与短吻红舌鳎(C. joyneri)、短吻三线舌鳎(C. abbreviatus)与紫斑舌鳎(C. purpureomaculatus)、半滑舌鳎(C. semilaevis)与窄体舌鳎(C. gracilis)及褐斑三线舌鳎(C. trigrammus)这三组物种可能存在同种异名现象。这一结果提示, 基于形态学对舌鳎亚科的种属分类鉴定尚存在不足, 线粒体DNA的系统发育关系可为其分类的修订提供有意义的参考和佐证。     

The geographic distribution and host range of Capillaria hepatica (Bancroft) (Nematoda) in Australia.

The geographic distribution, host range and prevalence of Capillaria hepatica were recorded in 4629 house mice, Mus domesticus, 263 black rats, Rattus rattus, and 58 Norway rats, R. norvegicus. The parasite was found at five localities, all in or near large towns along the coast. The two Rattus species appeared to be the primary hosts of C. hepatica in Australia. Published and unpublished data on helminth infections of Australian native mammals from 1162 murids (26 species), 3018 marsupials (67 species) and 99 monotremes (two species) were compiled. Only seven animals from three murid species were infected with C. hepatica; all were from the same rainforest in northern Queensland. C. hepatica was distributed widely, occurring in the house mouse, black rat and Norway rat on a 10,850 ha farm but there was no infection in cattle, sheep or goats (abattoir records). Also, 52 rabbits, four cats and one fox (shot samples) and 27 marsupial mice, Sminthopsis crassicaudata (museum specimens), had no sign of C. hepatica infection. Overall, the results indicate that transmission of C. hepatica to native, domestic and feral mammals is rare, presumably because of ecological constraints on egg embryonation and survival. In the light of these findings, the potential use of C. hepatica as a biological agent to control mouse plagues in Australia is discussed.