Phylogenetic Diversity of the Sulfur Cycle Bacteria in the Bottom Sediments of the Chersonesus Bay

The Black Sea is the largest meromictic basin, in the bottom sediments of which a powerful biogenic process of sulfide production occurs. The goal of the present work was to obtain data on phylogenetic diversity of the sulfur cycle microorganisms (sulfate-reducing and sulfur-oxidizing bacteria) in the Black Sea coastal gas-saturated bottom sediments. The samples were collected in the Chersonesus (Blue) Bay near Sevastopol from whitish bacterial mats of sulfurettes, and from the upper layer of the nearby seabed. Using DNA isolated from the native samples and obtained enrichment cultures, PCR analysis was performed with oligonucleotide primers specific to the fragments of the 16S rRNA genes of the main subgroups of sulfatereducing bacteria (SRB) and to the fragments of the dsrB gene (both reductive and oxidative types), encoding the β-subunit of dissimilatory (bi)sulfite reductase, the key enzyme in the sulfur cycle, inherent in both sulfate- reducing and sulfur-oxidizing microorganisms. The presence of 16S rRNA gene fragments specific to the genera Desulfobacterium, Desulfobacter, Desulfococcus–Desulfonema–Desulfosarcina, and Desulfovibrio–Desulfomicrobium was detected in the DNA samples isolated from coastal bottom bacterial mats. Usage of denaturing gradient gel electrophoresis (DGGE) with subsequent sequencing of reamplified dsrB gene fragments revealed that according to deduced amino acid sequences encoded by the dsrB gene (reductive type), SRB from the coastal gas-saturated bottom sediments of the Black Sea had the highest homology (92?99%) with the dsrB gene of cultured SRB belonging to the genera Desulfovibrio, Desulfatitalea, Desulfobacter, and Desulfobacterium, as well as with uncultured SRB strains from various marine habitats, such as bottom sediments of the Northern and Japanese seas. Deduced amino acid sequences encoded by the oxidative dsrB gene had the highest homology (90?99%) with the relevant sequences of the genera Thiocapsa, Thiobaca, Thioflavicoccus, and Thiorhodococcus.     

Implications of absence of seawater-type mitochondria-rich cells and results of molecular analyses for derivation of the non-parasitic Ukrainian brook lamprey <Emphasis Type="Italic">Eudontomyzon mariae</Emphasis>

The Ukrainian brook lamprey Eudontomyzon mariae is the most widespread lamprey species in eastern Europe. Although E. mariae is generally considered a derivative of Eudontomyzon danfordi, an exclusively freshwater parasitic species, it has alternatively been suggested that it was recently derived from a now extinct anadromous Black Sea ancestor. Several non-parasitic lampreys and the landlocked sea lamprey, which have recently evolved from anadromous ancestors, still develop a seawater-type mitochondria-rich cell (SW-MRC) in their gills. In contrast, this cell type is not present in the gills of either Lampetra aepyptera, a non-parasitic lamprey of ancient origin, or the parasitic Ichthyomyzon unicuspis and I. castaneus that likewise have long evolutionary histories in fresh water. Eudontomyzon mariae from the Vistula River in the Baltic River basin does not possess SW-MRC, which is inconsistent with a recent origin from an anadromous ancestor. Mitochondrial DNA sequence data were thus used to infer the relationship between different populations of E. mariae and E. danfordi, and to reconstruct the transition from anadromy to freshwater residency. The results suggest that E. mariae evolved independently in the Baltic, Black, and Caspian Sea basins, and not recently from an anadromous ancestor. Although E. mariae in the Danube River may have arisen relatively recently from E. danfordi (differing by 0.7–1.1% in cytochrome b gene sequence), other E. mariae populations (including in the Vistula River) are genetically closer (0.6%) to the hypothetical ancestor of both E. mariae and E. danfordi. That ancestor was probably a freshwater resident, since SW-MRCs are not rapidly lost following confinement in fresh water.     

Black Sea algal viruses

Monitoring of the Black Sea algal viruses in Sevastopol bays and Crimean water areas has been carried out since 2002. Based on the methods that were developed and patented by the author, more than 200 strains of algal viruses of five species of microalgae that are new to science were isolated: TvV (Tetraselmis viridis virus), DvV (Dunaliella viridis virus), PtV (Phaeodactylum tricornutum virus), PpV (Prorocentrum pusillum virus) and IgV (Isochrysis galbana virus). For the first time in the Black Sea, the Emiliania huxleyi virus (EhV) of microalgae was isolated. Using the method of electron microscopy, the Black Sea algal viruses were identified as icosahedral virions with respective sizes of 56–60, 45–48, 50–53, 88–92, and 128–132 nm, for the TvV, PtV, DvV, PpV and IgV viruses. The EhV size, as determined by the method of filtration, was within the range of 50–200 nm. In the IgV and EhV viruses we revealed a viral envelope. Based on their characters the isolated algal viruses were attributed to the Phycodnaeviridae. The maximum number of algal viruses was observed in the spring and autumn seasons, which is typical for their host phytoplankton species. The Black Sea algal viruses, TvV, PpV, IgV, and EhV, displayed no strict species specificity and have a wide range of available hosts.     

Molecular identification key based on PCR/RFLP for three polychaete sibling species of the genus <Emphasis Type="Italic">Marenzelleria</Emphasis>, and the species’ current distribution in the Baltic Sea

Studies of Marenzelleria species were often hampered by identification uncertainties when using morphological characters only. A newly developed PCR/RFLP protocol allows a more efficient discrimination of the three species Marenzelleria viridis, Marenzelleria neglecta and Marenzelleria arctia currently known for the Baltic Sea. The protocol is based on PCR amplification of two mitochondrial DNA gene segments (16S, COI) followed by digestion with restriction enzymes. As it is faster and cheaper than PCR/sequencing protocols used so far, the protocol is recommended for large-scale analyses. The markers allow an undoubted determination of species irrespective of life stage or condition of the worms in the samples. The protocol was validated on about 950 specimens sampled at more than 30 sites of the Baltic and the North Sea, and on specimens from populations of the North American east coast. Besides this test we used mitochondrial DNA sequences (16S, COI, Cytb) and starch gel electrophoresis to further investigate the distribution of the three Marenzelleria species in the Baltic Sea. The results show that M. viridis (formerly genetic type I or M. cf. wireni) occurred in the Öresund area, in the south western as well as in the eastern Baltic Sea, where it is found sympatric with M. neglecta. Allozyme electrophoresis indicated an introduction by range expansion from the North Sea. The second species, M. arctia, was only found in the northern Baltic Sea, where it sometimes occurred sympatric with M. neglecta or M. viridis. For Baltic M. arctia, the most probable way of introduction is by ship ballast water from the European Arctic. There is an urgent need for a new genetic analysis of all Marenzelleria populations of the Baltic Sea to unravel the current distribution of the three species.     

Abundance and Diversity of Biofilms in Natural and Artificial Aquifers of the Äspö Hard Rock Laboratory,Sweden

Six cores were drilled and retrieved from 186-m depth in the Äspö Hard Rock Laboratory (HRL) tunnel to investigate whether indigenous biofilms develop on fracture surfaces in groundwater-conducting aquifers in granitic rock. A clone library was constructed from fracture surface material (FSM), for community composition analysis. Quantitative polymerase chain reaction (qPCR) was applied to quantify gene copies using the 16S rRNA gene for domain Bacteria and the adenosine-phosphosulfate reductase gene (apsA) for sulfate-reducing bacteria (SRB). Results were compared with three groundwater systems with biofilms in laminar flow reactors (LFRs) at 450-m depth in the Äspö HRL. The total number of cells, counted microscopically, was approximately 2?×?10⁵ cells cm^–2 in the LFR systems, consistent with the obtained qPCR 16S rRNA gene copies. qPCR analysis reported ～1?×?10² up to ～1?×?10⁴ gene copies cm^–2 on the FSM from the drill cores. In the FSM biofilms, 33% of the sequenced clones were related to the iron-reducing bacterium Stenotrophomonas maltophilia, while in the LFR biofilms, 41% of the sequenced clones were affiliated with the genera Desulfovibrio, Desulforhopalus, Desulfomicrobium, and Desulfobulbus. The community composition of the FSM biofilms differed from the drill water community, excluding drill water contamination. This work reports significant numbers of microorganisms on natural hard rock aquifer fracture surfaces with site-specific community compositions. The probability that biofilms are generally present in groundwater-conducting aquifers in deep granitic rock is consequently great.     

Bacterial communities involved in sulfur transformations in wastewater treatment plants

The main sulfate-reducing (SRB) and sulfur-oxidizing bacteria (SOB) in six wastewater treatment plants (WWTPs) located at southern Brazil were described based on high-throughput sequencing of the 16S rDNA. Specific taxa of SRB and SOB were correlated with some abiotic factors, such as the source of the wastewater, oxygen content, sample type, and physical chemical attributes of these WWTPs. When the 22 families of SRB and SOB were clustered together, the samples presented a striking distribution, demonstrating grouping patterns according to the sample type. For SOB, the most abundant families were Spirochaetaceae, Chromatiaceae, Helicobacteriaceae, Rhodospirillaceae, and Neisseriaceae, whereas, for SRB, were Syntrophaceae, Desulfobacteraceae, Nitrospiraceae, and Desulfovibriaceae. The structure and composition of the major families related to the sulfur cycle were also influenced by six chemical attributes (sulfur, potassium, zinc, manganese, phosphorus, and nitrogen). Sulfur was the chemical attribute that most influenced the variation of bacterial communities in the WWTPs (λ = 0.14, p = 0.008). The OTUs affiliated to Syntrophus showed the highest response to the increase of total sulfur. All these findings can contribute to improve the understanding in relation to the sulfur-oxidizing and sulfate-reducing communities in WWTPs aiming to reduce H₂S emissions.     

Distribution of denitrifying bacterial communities in the stratified water column and sediment–water interface in two freshwater lakes and the Baltic Sea

We have studied the distribution and community composition of denitrifying bacteria in the stratified water column and at the sediment–water interface in lakes Plußsee and Schöhsee, and a near-shore site in the Baltic Sea in Germany. Although environmental changes induced by the stratification of the water column in marine environments are known to affect specific populations of denitrifying bacteria, little information is available for stratified freshwater lakes and brackish water. The aim of the present study was to fill this gap and to demonstrate specific distribution patterns of denitrifying bacteria in specific aquatic habitats using two functional markers for the nitrite reductase (nirK and nirS genes) as a proxy for the communities. The leading question to be answered was whether communities containing the genes nirK and nirS have similar, identical, or different distribution patterns, and occupy the same or different ecological niches. The genes nirK and nirS were analyzed by PCR amplification with specific primers followed by terminal restriction fragment length polymorphism (T-RFLP) and by cloning and sequence analysis. Overall, nirS-denitrifiers were more diverse than nirK-denitrifiers. Denitrifying communities in sediments were clearly different from those in the water column in all aquatic systems, regardless of the gene analyzed. A differential distribution of denitrifying assemblages was observed for each particular site. In the Baltic Sea and Lake Plußsee, nirK-denitrifiers were more diverse throughout the water column, while nirS-denitrifiers were more diverse in the sediment. In Lake Schöhsee, nirS-denitrifiers showed high diversity across the whole water body. Habitat-specific clusters of nirS sequences were observed for the freshwater lakes, while nirK sequences from both freshwater lakes and the Baltic Sea were found in common phylogenetic clusters. These results demonstrated differences in the distribution of bacteria containing nirS and those containing nirK indicating that both types of denitrifiers apparently occupy different ecological niches.     

The lifecycle of <Emphasis Type="Italic">Dichelyne minutus</Emphasis> (Rudolphi, 1819) (Nematoda: Cucullanidae) in the estuarine biocenosis of the Black Sea

The lifecycle, the host–parasite system, and the ecological features of the nematode Dichelyne minutus (Rudolphi, 1819), which parasitizes invertebrates and fish in the estuarine biocenosis located at the influx of the Chornaya River into the Black Sea (off Sevastopol), have been studied. The host–parasite system of D. minutus includes the polychaete Hediste diversicolor Müller, 1776 (as an obligatory intermediate host) and nine fish species, of which seven are definitive hosts and two are accidental or captive hosts. It has been found that the lifecycle of D. minutus in the biocoenosis of the Black Sea differs from the lifecycle of this nematode that inhabits the Baltic and North seas. In the studied biocoenosis, nematode larvae occur in polychaetes and fish only in the spring and summer; no larvae are found in the autumn (the study was not conducted in the winter). The nematode parasitizes the polychaete H. diversicolor in the spring; the main source of infection in this period is obviously nematode eggs that were laid in the autumn and have overwintered in the environment. The infection process ends by early summer. The seasonal and size–age dynamics of nematode infection of the round goby, Neogobius melanostomus (Pallas, 1814), are analyzed taking the specifics of fish biology into account. The short period of infection, as characterized by the active emission of nematode larvae, their low survival in polychaetes and fish, a short lifecycle and the mortality of mature nematodes after egg-laying in the autumn result in an over-scattered distribution (mostly of the negative-binomial type) of D. minutus in populations of all the hosts.     

First record of the non-indigenous jellyfish <Emphasis Type="Italic">Blackfordia virginica</Emphasis> (Mayer, 1910) in the Baltic Sea

Marine invasions are of increasing concern for biodiversity conservation worldwide. Gelatinous macrozooplankton contain members, which have become globally invasive, for example the ctenophore Mnemiopsis leidyi or the hydromedusae Blackfordia virginica. B. virginica is characterised by a large salinity tolerance, with a brackish-water habitat preference, and by a metagenic life history strategy with an alternation between sexually reproducing planktonic medusae and asexually reproducing benthic polyps to complete the life cycle. In this study we analysed 8 years of ichthyoplankton survey data (2010–2017) from the Kiel Canal and 14 ichthyoplankton summer surveys in the central Baltic Sea (2008–2017). We report the first presence of B. virginica in northern Europe, namely from the southwestern Baltic Sea and the Kiel Canal. In the Kiel Canal, B. virginica was first sporadically sighted in 2014 and 2015 and has developed persistent populations since summer 2016. Changes in size-frequency distributions during summer 2016 indicate active recruitment in the Kiel Canal at salinities between 7 and 13 and temperatures?>?14 °C. Close vicinity to and direct connection with the southwestern Baltic Sea, where B. virginica was observed during 2017, indicate that the Baltic Sea and other brackish-water habitats of Northern Europe are at risk for colonisation of this non-indigenous species. Our results highlight that monitoring activities should consider gelatinous macrozooplankton for standard assessments to allow for the detection of non-indigenous species at an early stage of their colonisation.     

Alkaliphilic sulfidogenesis on cellulose by combined cultures

Soda lakes are characterized by an intense sulfur cycle that begins with sulfidogenesis. Model laboratory experiments that involved combining of pure cultures showed that, during anaerobic decomposition of cellulose by Clostridium alkalicellulosi, the sulfate-reducing bacteria (SRB) of the species Desulfonatronovibrio hydrogenovorans, Desulfonatronum lacustre, and Desulfonatronum cooperativum, different in their nutritional requirements, may directly use the cellulose fermentation products for sulfidogenesis without mediatory microorganisms. In binary cocultures with SRB, the amount of the H₂S formed constituted from one-third to two-thirds of the cellulose [H] equivalents; acetate was among the products formed. When the syntrophic Contubernalis alkalaceticum, capable of acetate oxidation, was incorporated into the trophic chain along with hydrogenotrophic SRB, the amount of the H₂S formed exceeded by 33–42% the amount of the [H] equivalents in the utilized cellulose, water being the source of additional hydrogen. Thus, the trophic pathway from plant residues to sulfide, previously considered to be the longest in the alkaliphilic microbial community, may involve a minimal number of stages and do without intermediate participation of dissipotrophic fermenting organisms.     

Fossil Mesozoic and Cenozoic weevils (Coleoptera,Obrienioidea, Curculionoidea)

All known extinct species of Mesozoic and Cenozoic weevils are listed. Ten species of Obrienioidea and 895 Curculionoidea species are recognized, including 88 Nemonychidae, 43 Anthribidae, 44 Ithyceridae, 65 Scolytidae, 12 Belidae, 67 Brentidae, 508 Curcuionidae, 45 Rhynchitidae, six Attelabidae, and 16 Platypodidae. The Triassic beds have yielded six fossil species; Jurassic, 64; Jurassic–Cretaceous boundary, 2; Cretaceous, 105; Paleogene, 510; Neogene, 190; and Pleistocene–Holocene, 22 (5 are synonyms). A new subfamily, Montsecbelinae Legalov, subfam. nov. (with the type genus Montsecbelus Zherikhin et Gratshev, 1997); the new tribes Cretochoragini Legalov, trib. nov. (with the type genus Cretochoragus Soriano et al., 2006), Montsecanomalini Legalov, trib. nov. (with the type genus Montsecanomalus Soriano et al., 2006), Montsecbelini Legalov, trib. nov. (with the type genus Montsecbelus Zherikhin et Gratshev, 1997), Gratshevibelini Legalov, trib. nov. (with the type genus Gratshevibelus Soriano, 2009), Davidibelini Legalov, trib. nov. (with the type genus Davidibelus Zherikhin et Gratshev, 2004); the new genera Allandroides Legalov, gen. nov. (with the type species Allandroides vossi Legalov, sp. nov.), Baissabrenthorhinus Legalov, gen. nov. (with the type species Baissabrenthorhinus mirabilis Legalov, sp. nov.), Ithyceroides Legalov, gen. nov. (with the type species Ithyceroides klondikensis Legalov, sp. nov.), Furhylobius Legalov, gen. nov. (with the type species Furhylobius troesteri Legalov, sp. nov.), Electrauletes Legalov, gen. nov. (with the type species Electrauletes unicus Legalov, sp. nov.); new species Allandroides vossi Legalov, sp. nov. (Baltic amber), Glaesotropis gusakovi Legalov, sp. nov. (Baltic amber), G. succiniferus Legalov, sp. nov. (Baltic amber), G. alleni Legalov, sp. nov. (Baltic amber), G. gratshevi Legalov, sp. nov. (Baltic amber), Baissabrenthorhinus mirabilis Legalov, sp. nov. (Baissa locality), Ithyceroides klondikensis Legalov, sp. nov. (Republic Graben locality), Melanapion poinari Legalov, sp. nov. (Baltic amber), M. gusakovi Legalov, sp. nov. (Baltic amber), Furhylobius troesteri Legalov, sp. nov. (Mors locality), Baltocar convexus Legalov, sp. nov. (Baltic amber), and Electrauletes unicus Legalov, sp. nov. (Baltic amber) are newly described.     

Effect of salinity on vegetative growth and sexual reproduction of algae from the genus <Emphasis Type="Italic">Ardissonea</Emphasis> de Notaris (Bacillariophyta)

Effect of salinity on vegetative growth and sexual reproduction was investigated in laboratory cultures of a benthic diatom Ardissonea crystallina (C. Agardh) Grunow from the Black Sea and vegetative growth of Ardissonea sp. from the coast of Martinique, the Atlantic Ocean. Typical water salinity in the places where the populations inhabit differs two times. It was shown that the clones of both populations have a broad tolerance and great ability to adapt to changes in salinity. Cells of different size (i.e., in different stages of the life cycle) responded differently to desalination. Salinities optimal for vegetative growth of these species were not the same. Ardissonea from the coast of Martinique was more sensitive to low levels of salinity as compared with A. crystallina from the Black Sea. It was surprising that salinity optimal for vegetative growth and sexual reproduction of the Black Sea species did not coincide with the real salinity level of the Black Sea. Position of physiological optimums indicates an oceanic (or Mediterranean) origin of the Black Sea population of A. crystallina.     

A new invasive species of buprestid beetles in the Russian fauna: <Emphasis Type="Italic">Lamprodila</Emphasis> (<Emphasis Type="Italic">Palmar</Emphasis>) <Emphasis Type="Italic">festiva</Emphasis> (L.) (Coleoptera,Buprestidae), a pest of Cupressaceae

The buprestid beetle Lamprodila (Palmar) festiva (L.) (Coleoptera, Buprestidae, Poecilonoini), an invasive pest of cultivated Cupressaceae such as Thuja, Chamaecyparis, Cupressus, and Juniperus in the Greater Sochi area (the Russian Black Sea coast), is recorded for the first time for Russia and the former USSR. Data on the systematic position, diagnostic characters, distribution, host plants, biology of the new pest, and its damage to urban plantations are discussed. Recent records of this species in the new areas of Central and Eastern Europe as well as on the Black Sea coast of the Caucasus suggest expansion of its range during the recent decades.     

Genetic variability of anchovy in the Azov-Black Sea basin

The intraspecific structure of the European anchovy (Engraulis encrasicolus) was studied on the basis of mitochondrial cytochrome b gene (cytb) fragment variability in 84 individuals from seven localities of the Black Sea and the Sea of Azov. The data on haplotype and nucleotide diversity and the values of neutrality tests suggested expansive growth of anchovy populations in the Azov-Black Sea basin. All samples from anchovy populations demonstrated a high level of haplotype diversity (Hd = 0.962). Two dominant haplotypes were identified, the frequencies of which were not directional, and they were present in all localities. Sequence analysis of the mitochondrial cytb gene fragment showed no differentiation between the Sea of Azov and the Black Sea subspecies.     

Phototrophic picoeukaryotes of Onega Bay,the White Sea: Abundance and species composition

The abundance, biomass, and composition of phototrophic picoeukaryotes (PPE, cell size less than 3 μm) were studied in Onega Bay of the White Sea in June 2015. The highest PPE abundance and biomass were registered in the 0–5-m water layer. In the bay, in the 0–5-m water layer, the average abundance and biomass varied from 0 to 36.8 × 10⁴ cell/L and from 0 to 117 μg С/m³, respectively. The Illumina sequencing of V4 region of 18S rRNA gene revealed eight classes of PPE. Mamiellophyceae dominated both by number of reads and by operational taxonomic units. The green algae Bathycoccus prasinos, Ostreococcus tauri, and Micromonas pusila, as well as diatoms Skeletonema marinoi and Minidiscus trioculatus, were identified to the species level.     

The prevalence of antibodies to morbilliviruses,Brucella, and Toxoplasma in the Black Sea bottlenose dolphin <Emphasis Type="Italic">Tursiops truncatus ponticus</Emphasis> maintained in captivity

The prevalence of antibodies to morbilliviruses, Brucella and Toxoplasma was studied in the Black Sea bottlenose dolphin Tursiops truncatus ponticus maintained in captivity. Serum from 59 dolphins was tested, and in most cases the tests were repeated 2–4 years later. Antibodies to the tested pathogens were detected in 69% of the dolphins. Sixteen Black Sea bottlenose dolphin maintained in captivity (27%) had antibodies to two, or even three, of the pathogens. No apparent signs of infection were found in the dolphins; however, the high prevalence of antibodies to the morbilliviruses, Brucella, and Toxoplasma may indicate an important role of dolphins in the ecology of these pathogens.     

Findings of new and rare fish species in the coastal zone of the Crimea (the Black Sea)

Characteristics of seven Atlantic-Mediterranean fish species are provided. Of them, four (gobies—yellow-headed Gobius xanthocephalus and red-mouthed G. cruentatus, incognito blenny Parablennius incognitus, and greater pipefish Syngnathus acus) were either first found in the Black Sea coastal zone of the Crimea, or their findings were doubted, and three species (thin-lipped grey mullet Liza ramada, European barracuda Sphyraena sphyraena, and Black Sea salmon Salmo trutta labrax) are very rare. Over the last decade, the authors recorded 15 fish species; of them, seven Atlantic-Mediterranean species have dispersed along the Crimean coasts by now, one endemic of the far eastern seas (chameleon goby Tridentiger trigonocephalus) has naturalized in Sevastopol Bay, four invading species, freshwater by origin, permanently occur in the estuary zones of the peninsula; the remaining three species are known from single findings and apparently belong to the category of accidental fish. An increase in the species composition of ichthyofauna off the Black Sea coasts of the Crimea results from the on-going process of mediterranization—the invasion in the estuary of freshwater tolerant species at the expense of accidental species that penetrated here either independently or with ballast waters.     

Nitrogen fixing bacterial diversity in a tropical estuarine sediments

Microorganisms play a significant role in biogeochemical cycles, especially in the benthic and pelagic ecosystems. Role of environmental parameters in regulating the diversity, distribution and physiology of these microorganisms in tropical marine environment is not well understood. In this study, we have identified dinitrogen (N₂) fixing bacterial communities in the sediments by constructing clone libraries of nitrogenase (nifH) gene from four different stations in the Cochin estuary, along the southeastern Arabian Sea. N₂ fixing bacterial clones revealed that over 20 putative diazotrophs belong to alpha-, beta-, gamma-, delta- and epsilon- proteobacteria and firmicutes. Predominant genera among these were Bradyrhizobium sp. (α-proteobacteria), Dechloromonas sp. (β-proteobacteria); Azotobactor sp., Teredinibacter sp., Methylobacter sp., Rheinheimera sp. and Marinobacterium sp. (γ-proteobacteria); Desulfobacter sp., Desulfobulbus sp. and Desulfovibrio sp. (δ -proteobacteria); Arcobacter sp. and Sulfurospirillum sp. (ε-proteobacteria). Nostoc sp. was solely identified among the cyanobacterial phylotype. Nitrogen fixing Sulfate reducing bacteria (SRBs) such as Desulfobulbus sp., Desulfovibrio sp., Desulfuromonas sp., Desulfosporosinus sp., Desulfobacter sp., were also observed in the study. Most of the bacterial nifH sequences revealed that the identities of N₂ fixing bacteria were less than 95% similar to that available in the GenBank database, which suggested that the sequences were of novel N₂ fixing microorganisms. Shannon-Weiner diversity index of nifH gene ranged from 2.95 to 3.61, indicating an inflated diversity of N₂ fixing bacteria. Canonical correspondence analysis (CCA) implied positive correlation among nifH diversity, N₂ fixation rate and other environmental variables.     

Factors affecting distribution and abundance of jellyfish medusae in a temperate estuary: a multi-decadal study

Three hydrozoan species, reputedly from the Black Sea (Maeotias marginata, Blackfordia virginica, Moerisia lyonsi), are now found throughout the San Francisco Estuary, California, but long-term and seasonal patterns of distribution and abundance have been poorly documented. We evaluated trends from 35 years of monthly otter trawl data and from a 2-year macrozooplankton survey in Suisun Marsh, a brackish region with extensive tidal sloughs and channels that is part of the San Francisco Estuary. Medusae of all three hydrozoans occurred primarily during the dry season (summer–fall). Abundance of M. marginata medusae significantly increased since the 1980s. Moerisia lyonsi was the most abundant hydrozoan in the macrozooplankton medusa survey followed by M. marginata and B. virginica. Salinity and temperature were strongly positively associated with medusa abundance. Maeotias marginata occurred in the lowest salinity range (2.3–9.1 ppt), while M. lyonsi (2.8–9.9 ppt) and B. virginica (5.6–10.3 ppt) occupied slightly higher salinities. Overall, abundance and distribution of medusae of these three hydrozoans in Suisun Marsh depended on seasonal stability of environmental conditions that favored blooms. While harmful effects have yet to be demonstrated, they could become more of a problem as both sea level and water temperatures rise, especially given the combined range of environmental conditions at which the three species occur.     

Morphological variability,chromosome polymorphism,and problems of identifying individual species of gobies of the group <Emphasis Type="Italic">Ponticola</Emphasis> (Gobiidae) and assessing taxonomic relations of local populations

In connection with the problems of identification of certain species of the genus Ponticola, and especially their juveniles, morphological and genetic studies of gobies collected in the northwestern part of the Black Sea basin were carried out using literature data and museum collections. Karyological data indicate a distinct species status of western (P. odessicus) and eastern (P. eurycephalus) mushroom gobies; the range of the latter includes not only the Sea of Azov but also waters of the Black Sea coast of the Crimean Peninsula; these conclusions are supported by preliminary molecular genetic studies. Based on the obtained results of intraspecific morphological variability of species, we propose morphological characteristics for identification of adult P. syrman and P. odessicus, as well as a specific set of characteristics to identify juvenile (body length less than 50 mm) P. syrman, P. kessleri, and P. odessicus. We reveal differences in the karyotype structure of P. syrman from populations of the Sasyk Lake and the Don River, which do not differ in terms of external morphological characteristics and variability of cytochrome b haplotypes. The need for further research of phylogeography and morphological and karyological variability of P. syrman sensu lato is assumed.