数据科学在旧石器考古学中的应用

从考古学诞生之初,对抽象数据的解读与分析就一直伴随。对于旧石器考古学而言,“人工制品”成为了传达史前物质文化信息的主要载体,对人工制品中所提取的数据进行科学解读,成为了复原古代人类历史的关键步骤。数据科学在旧石器考古学中的应用具有三个主要因素,分别是数理统计学、计算机应用,以及旧石器考古学的基础数据与核心科学问题以及理论知识,即采用某种或多种逻辑将旧石器考古学领域的数据进行基于计算机平台的数理统计,并借助计算机语言对庞大的数据进行快速计算,从而帮助我们解释和重建史前人类社会。在目前的旧石器考古学领域,研究者们已经不再满足于对标本所进行的基础的描述性信息统计,对数据进行科学的处理并系统解读的诉求前所未有的强烈,这种诉求不断推动着学科的发展,深化了我们原本对史前社会的认识,甚至开拓出了新的研究领域,极大地推动了旧石器考古学的发展。本文就数据科学的概念、技术路线,以及在旧石器考古学中的应用历史与发展前景做详细介绍,希望通过系统性的梳理,使更多读者熟悉相关的研究手段与具体技术,使更多考古学者对数据科学的应用产生兴趣,从而应用于相关的项目研究中。     

Climate change challenges,plant science solutions

Climate change is a defining challenge of the 21st century, and this decade is a critical time for action to mitigate the worst effects on human populations and ecosystems. Plant science can play an important role in developing crops with enhanced resilience to harsh conditions (e.g. heat, drought, salt stress, flooding, disease outbreaks) and engineering efficient carbon-capturing and carbon-sequestering plants. Here, we present examples of research being conducted in these areas and discuss challenges and open questions as a call to action for the plant science community.

We discuss research aimed at improving carbon sequestering capacity and climate resilience in plants to illustrate how plant science can help to mitigate climate change and enhance food security.     

实验动物福利与人的保护

实验动物学是一门研究实验动物和动物实验的综合性学科。是生命科学研究的基础和支撑条件。随着社会经济的长足发展和生命科学研究的突飞猛进,国际交流与合作的不断加强,实验动物福利倍受人们的关注。进入21世纪后国际上又对从事实验动物饲养管理和动物实验的工作人员的防护问题提出了新的要求,这就要我们必须考虑到人与实验动物如何和谐相处,促进科学发展。既要做到加强动物福利,又要注意人的保护,找到二者之间的平衡点,加快实验动物科学的发展。     

The Rockefeller University Hospital (1910-2010): creating the science of medicine

The year 2010 marked the centennial of the Rockefeller University Hospital, one of the great philanthropic achievements of 20th-century science. For 100 years, the Hospital played a central role in the development and growth of medical science by enabling physician-scientists to make intensive study of human biology and disease. With ingenuity and devotion, they greatly enriched clinical medicine as well as basic biological science. This account emphasizes the founding and first half-century of the Hospital as it became a germinal center for clinical investigation. The second half of the century saw rapid change in medicine and health care with vexing problems, many yet unsolved. This history should serve as a call to arms for maintaining the linkage of science and medicine, supporting patient-oriented research as a basic discipline of medicine.     

Physiology,Hygiene and the Entry of Women to the Medical Profession in Edinburgh c. 1869–c. 1900

Academic physiology, as it was taught by John Hughes Bennett during the 1870s, involved an understanding of the functions of the human body and the physical laws which governed those functions. This knowledge was perceived to be directly relevant and applicable to clinical practice in terms of maintaining bodily hygiene and human health. The first generation of medical women received their physiological education at Edinburgh University under Bennett, who emphasised the importance of physiology for women due to its relevance for the hygienic needs of the family and of society. With the development of laboratory-based science as a distinct aspect of medical education during the later nineteenth century, however, so the direct application of physiology to clinical practice diminished. The understanding of physiology as hygiene was marginalised by the new orthodoxy of scientific medicine. This shift in the physiological paradigm enabled medical women to stake out a specific field of interest within medicine which was omitted from the new definition of physiology as pure medical science: hygiene and preventive medicine. Women physicians were able to take advantage of the shift towards science as the basis of medical theory and practice to define their own specific role within the profession.     

Closing the Gap: Inverting the Genetics Curriculum to Ensure an Informed Public

Over the past 20 years, the focus of national efforts to improve K-12 science education has ranged from curriculum and professional development of teachers to the adoption of science standards and high-stakes testing. In spite of this work, students in the United States continue to lag behind their peers in other countries. This underperformance is true for genetics, as well as for science and math in general, and is particularly worrisome given the accelerating need for scientists and engineers in our increasingly technology-driven economy. A scientifically literate public is essential if citizens are to engage effectively with policymakers on issues of scientific importance. Perhaps nowhere is this conjunction more personally meaningful than in human genetics and medicine. Rapid changes in our field have the potential to revolutionize healthcare, but the public is ill prepared to participate in this transformation. One potential solution is to modernize the genetics curriculum so that it matches the science of the 21^st century. This paper highlights changes in human genetics that support a curricular reorganization, outlines the problems with current genetics instruction, and proposes a new genetics curriculum.     

Milestones and rates of growth in the development of biology.

An attempt has been made to examine the exponetial rate of increase of the great discoveries, the "milestones," in the rise of biology from the beginning of the seventeenth century, and particularly in the rise of genetics from the beginning of the twentieth century. The biological sciences in general, during the three centuries named, exhibit a doubling of the number of great discoveries in each fifty years. Genetics, in the twentieth century, has risen much faster. Its doubling time for the most significant discoveries has been about twenty-two and a half years. Either of these rates is of course far slower than the exponential rise in the total output of biological science, the number of scientists, or the cost of science, which have been generally reported to double about every ten years or less. It follows that, as time passes, and until these exponetial rates become considerably altered, a relationship of diminishing returns is quite evident. As time passes, even though the most significant discoveries continue to increase exponetially, it takes a greater total output, a greater number of (assisting?) scientists, and greater amounts of money to yield a set quantity of major new findings. The rapid rise of the life sciences cannot continue its present course into the twenty-first century without meeting ineluctable limits to expansion. It may be argued that as in other human spheres of activity, so too in natural science there are limits to growth which we are rapidly approaching. From the predictable asymptote only unpredictable breakthroughs might deliver us.     

菌根学对生物类学科发展的意义

菌根（mycorrhiza）是真菌与植物之间形成的最广泛的共生体。菌根真菌（rnycorrhizal fungi）具有丰富遗传多样性、形态多样性、物种多样性、生态系统多样性和功能多样性。菌根真菌与植物协同进化,发挥生理生态功能,对促进农林牧业生产、保持生态系统的稳定及其可持续生产力具有重大而不可替代的作用。经过一个多世纪的研究发展,菌根学（mycorrhizology）——菌物学与植物学的杂交学科终于在21世纪诞生了。随着研究的深入,人们发现菌根学不仅与菌物学和植物学关系极为密切,而且还与生态学、土壤学、保护生物学、植物保护学、微生物学、食用菌学、园林园艺学、作物栽培与耕作学、昆虫学等密切相关。作为一门新兴学科,菌根学自身发展的同时,也大大促进了相关学科的进展。本文系统总结了菌根学对其他学科发展所作的贡献,旨在进一步加强菌根学与其他学科的交叉渗透,为菌根学与其他学科协同进化奠定理论基础、促进多学科合作研究,为21世纪生物学的更大发展注入新的活力。     

Prolegomenon to a history of paleoanthropology: The study of human origins as a scientific enterprise. Part 2. Eighteenth to the twentieth century

Modern scientific theories of human origins can be traced directly back to the discoveries, arguments, and theories of the seventeenth century. But as we have seen in the first part of this paper, a great many critical steps had been taken, ideas proposed, and discoveries made long before this. The scientific advances of the sixteenth and seventeenth centuries owed much to ancient science, while still retaining many aspects of the medieval Christian world view. Yet both science and Christianity changed significantly as a result of the Renaissance, the Protestant Reformation, the Scientific Revolution, the voyages of exploration, and the changes wrought on European society as a result of industrialization. The question of human origins was directly affected by the archeological study of prehistoric ruins, new geological theories, the study of fossils, the discovery of “savage” peoples living in the New World, and the comparison of prehistoric stone implements from Europe with those collected in the New World. This proliferation of new discoveries, new theories, and the emergence of completely new scientific disciplines in the seventeenth century laid the foundation for the dramatic new discoveries and theories that came over the next three centuries.     

Human Origins Studies: A Historical Perspective

Research into the deep history of the human species is a relatively young science which can be divided into two broad periods. The first spans the century between the publication of Darwin’s Origin and the end of World War II. This period is characterized by the recovery of the first non-modern human fossils and subsequent attempts at reconstructing family trees as visual representations of the transition from ape to human. The second period, from 1945 to the present, is marked by a dramatic upsurge in the quantity of research, with a concomitant increase in specialization. During this time, emphasis shifted from classification of fossil humans to paleoecology in which hominids were seen as parts of complex evolving ecosystems. This shift is in no small part due to the incorporation of neo-Darwinian synthetic theory. Finally, technological innovation and changes in social context are considered as influences on human origins studies.     

Ecology after 100 years: Progress and pseudo-progress

Has the science of ecology fulfilled the promises made by the originators of ecological science at the start of the last century? What should ecology achieve? Have good policies for environmental management flowed out of ecological science? These important questions are rarely discussed by ecologists working on detailed studies of individual systems. Until we decide what we wish to achieve as ecologists we cannot define progress toward those goals. Ecologists desire to achieve an understanding of how the natural world operates, how humans have modified the natural world, and how to alleviate problems arising from human actions. Ecologists have made impressive gains over the past century in achieving these goals, but this progress has been uneven. Some sub-disciplines of ecology are well developed empirically and theoretically, while others languish for reasons that are not always clear. Fundamental problems can be lost to view as ecologists fiddle with unimportant pseudo-problems. Bandwagons develop and disappear with limited success in addressing problems. The public demands progress from all the sciences, and as time moves along and problems get worse, more rapid progress is demanded. The result for ecology has too often been poor, short-term science and poor management decisions. But since the science is rarely repeated and the management results may be a generation or two down the line, it is difficult for the public or for scientists to decide how good or bad the scientific advice has been. In ecology over the past 100 years we have made solid achievements in behavioural ecology, population dynamics, and ecological methods, we have made some progress in understanding community and ecosystem dynamics, but we have made less useful progress in developing theoretical ecology, landscape ecology, and natural resource management. The key to increasing progress is to adopt a systems approach with explicit hypotheses, theoretical models, and field experiments on a scale defined by the problem. With continuous feedback between problems, possible solutions, relevant theory and experimental data we can achieve our scientific goals.     

什么是可持续性科学

可持续发展是我们时代的主题,也是人类面临的最大挑战.自20世纪70年代,尤其是近20年来,可持续发展的概念日益频繁地出现在学术文章、政府文件以及公益宣传和商业广告之中.然而,为可持续发展提供理论基础和实践指导的科学——可持续性科学——是在21世纪初才开始形成的.该科学在短短的十几年中迅速开拓、不断发展,正在形成其科学概念框架和研究体系.中国是世界大国,是可持续性科学的哲学思想——“天人合一”——的故乡,有必要承担起时代之重任,在追求“中国梦”的同时促进全球可持续发展,并积极参与进而引领可持续性科学的研究和实践.为了帮助实现这一宏伟而远大目标,本文拟对可持续性科学的基本概念、研究论题和发展前景作一概述.可持续性科学是研究人与环境之间动态关系——特别是耦合系统的脆弱性、抗扰性、弹性和稳定性——的整合型科学.它穿越自然科学和人文与社会科学,以环境、经济和社会的相互关系为核心,将基础性研究和应用研究融为一体.可持续发展的核心内容往往因时、因地、 因人而异.因此,可持续性科学必须注重多尺度研究,同时应特别关注 50到100年的时间尺度和景观以及区域的空间尺度. 景观和区域不但是最可操作的空间尺度,同时也是上通全球、下达局地的枢纽尺度.可持续性科学需要聚焦于生态系统服务和人类福祉的相互关系,进而探讨生物多样性和生态系统过程,以及气候变化、土地利用变化和其他社会经济驱动过程对这一关系的影响.我们认为,景观和可持续性是可持续性科学的核心研究内容,也将是可持续性科学在以后几十年的研究热点.     

遗传学史在遗传学教学中的作用

科学史的研究和发展状况能反映一个国家的科学技术水平,遗传学史是生命科学发展史的一个重要分支,21世纪是生命科学的世纪,在遗传学教学中加强遗传学发展史的介绍,不仅具有教育功能,使学生了解遗传学的产生和发展,而且可以培养学生的思维能力和科学素质。本文就遗传学史的教育功能及在教学中的作用进行论述。     

A decade after the first full human genome sequencing: when will we understand our own genome?

The contrast between the pomp of celebrating the first full human genome sequencing in 2000 and the cautious tone of recollections a decade thereafter could hardly be greater. The promises with regard to medical cures and biotechnology applications have been realized not even nearly to the expectations. Understanding the human genomes means knowing the genes' and proteins' functions and their interconnectedness via biomolecular mechanisms. This articles estimates how long will it take to achieve this goal if we extrapolate from the previous decade (indeed, a century!) and the possible disruptive trends in science, technology and society that may accelerate the pace of progress dramatically.     

Applied genome research in the field of human vaccines

Prophylactic vaccination has made an essential contribution to the improvement of human health over the 20th century. However, we still lack efficient vaccines against major human diseases such as malaria or tuberculosis. Today, the design of therapeutic vaccines referred to as 'pharmaccines' is actively investigated in order to treat diseases such as cancer. In that context, novel ways to rationalize and accelerate vaccine discovery are needed. A series of advances in the fields of molecular biology and computer science, have greatly accelerated the rate at which candidate vaccine antigens can be discovered. In this review, we will present and discuss how applied genome research may facilitate antigen discovery and the design of new prophylactic and therapeutic vaccines.     

"The foolmaster who fooled them"

Throughout the nineteenth century, physicians assumed the major task of analyzing and warning against quackery and unorthodoxy. The nature of this criticism is described, with key reliance on Worthington Hooker's Lessons from the History of Medical Delusions (1850). Most physicians viewed prospects for suppressing quackery more hopefully than Hooker did. Even he, however, would be shocked that delusion could persist so stubbornly despite advancing medical science, expanding education, and increasing regulation. Many factors help explain today's continuing-even burgeoning-quackery. These include a less cheerful view of both human nature and of the future, widespread skepticism about the fruits for science, impatience with governmental regulation, the vogue for self-help in health, increasing promotional sophistication on the part of unorthodox health vendors, and cooperation among various wings of unorthodoxy to maximize political pressure. Examples are given. Champions of alternative therapies predict their triumph over orthodox medical science in the contest being waged for the allegiance of the public.     

The Human Genome Project: an examination of its challenge to the technological imperative

Increasingly scientists and governmental policymakers find themselves leaving their laboratories and office cubicles to share information and decision making with the general public. Contributing in large part to the development of science communication via the mass media has been the Human Genome Project (HGP). Examining the development of the HGP in the United States beginning with the early 1970s helps to establish why and how the general public has become a major player in science policy in the United States during the past quarter century, especially in regard to the ethical, legal, and social implications of research on human genetics. Calling into question the technological imperative--the idea that all things scientific must be pursued without question--the general public came to realize that exerting control over research funding is the key to participating in the scientific process.     

AlphaFold – A Personal Perspective on the Impact of Machine Learning

I outline how over my career as a protein scientist Machine Learning has impacted my area of science and one of my pastimes, chess, where there are some interesting parallels. In 1968, modelling of three-dimensional structures was initiated based on a known structure as a template, the problem of the pathway of protein folding was posed and bets were taken in the emerging field of Machine Learning on whether computers could outplay humans at chess. Half a century later, Machine Learning has progressed from using computational power combined with human knowledge in solving problems to playing chess without human knowledge being used, where it has produced novel strategies. Protein structures are being solved by Machine Learning based on human-derived knowledge but without templates. There is much promise that programs like AlphaFold based on Machine Learning will be powerful tools for designing entirely novel protein folds and new activities. But, will they produce novel ideas on protein folding pathways and provide new insights into the principles that govern folds?     

Contamination through preparation: risk of molecular genetic studies by using biological preservatives for museum collections

In paleogenetic science, artifacts (i.e. non-authentic DNA sequences) are mainly produced by cryptic contamination with (i) edaphon DNA sequences and/or (ii) human biomolecules derived from the involved researchers and the laboratory equipment. A third, and yet underestimated source of contamination with exogenous nucleic acids is provided by (iii) conservation practices applied to old material. Bone glue has been successfully used from the beginning of the 19th century up to the middle of this century, and comprises a rich source of non-authentic nucleic acids. An unequivocal identification of treated samples remains difficult since bone and the glue used for conservatory purposes bear similar chemical properties. Since the majority of agents used for the preservation of museum collections are of biological origin, the differentiation between contaminated and non-treated samples is required.