Testing biogeographical hypotheses in space and time: faunal relationships of the putative ancient Lake Egˇirdir in Asia Minor

Aim The aims of this study are to establish a multi‐locus phylogeny‐based hypothesis for the biogeographical relationship of gastropods from the putative ancient Lake Egˇirdir, to test the respective null hypothesis, to estimate the timing of biogeographical events based on independent molecular clock approaches, and to interpret the data with respect to the putative ancient character of Lake Egˇirdir. Location Lake Egˇirdir, western Taurus Lake District, Turkey. Methods DNA sequences from the putatively only extant endemic taxon of Lake Egˇirdir, Falsipyrgula pfeiferi, as well as representatives of other pyrgulinid genera from Europe and western Asia are used for phylogenetic analyses based on Bayesian inference. The respective null hypothesis is tested utilizing parametric bootstrapping. The timing of evolutionary events is estimated based on two independent molecular clock approaches, which involve the modelling of judicious errors associated with branch‐length calculations and calibration points. Results Bayesian inference indicates a very close relationship between the Lake Egˇirdir and Ponto‐Caspian taxa. Parametric bootstrapping rejects the null hypothesis that these taxa are not monophyletic (P ≤ 0.01). The alternative hypothesis, namely monophyly of the Ponto‐Caspian and Egˇirdir taxa, can therefore be accepted. The two independent molecular clock approaches show diversion times for the Ponto‐Caspian/Egˇirdir taxa of 0.42 ± 0.18 and 0.43 ± 0.63 Ma. Main conclusions The present study shows that there is no close biogeographical affiliation between the probably only remaining endemic taxon of Lake Egˇirdir and taxa from central Europe or the Balkan region. Instead, there is a very close and relatively young (i.e. late Pleistocene) biogeographical relationship with the Ponto‐Caspian pyrgulinids. However, fossil and comparative data from other invertebrates indicate that biogeographical connections between Lake Egˇirdir and the Ponto‐Caspian region existed during various time periods, i.e. the Miocene/Pliocene, early Pleistocene, and late Pleistocene. Acknowledging the still‐restricted knowledge of the evolutionary history of the lake, the data presented here do not reject the putative ancient status of Lake Egˇirdir. Future studies utilizing endemic taxa of other lakes in the region need to show whether the western Taurus Lake District represents a melting pot of Pleistocene refuge biodiversity from different regions, and whether the admixture of divergent lineages has created a genetically distinct set of taxa that would warrant the designation of the area as a unique biogeographical subregion.     

Phylogeography and taxonomic status of trout and salmon from the Ponto‐Caspian drainages,with inferences on European Brown Trout evolution and taxonomy

Current taxonomy of western Eurasian trout leaves a number of questions open; it is not clear to what extent some species are distinct genetically and morphologically. The purpose of this paper was to explore phylogeography and species boundaries in freshwater and anadromous trout from the drainages of the Black and the Caspian Seas (Ponto‐Caspian). We studied morphology and mitochondrial phylogeny, combining samples from the western Caucasus within the potential range of five nominal species of trout that are thought to inhabit this region, and using the sequences available from GenBank. Our results suggest that the genetic diversity of trout in the Ponto‐Caspian region is best explained with the fragmentation of catchments. (1) All trout species from Ponto‐Caspian belong to the same mitochondrial clade, separated from the other trout since the Pleistocene; (2) the southeastern Black Sea area is the most likely place of diversification of this clade, which is closely related to the clades from Anatolia; (3) The species from the Black Sea and the Caspian Sea drainages are monophyletic; (4) except for the basal lineage of the Ponto‐Caspian clade, Salmo rizeensis, all the lineages produce anadromous forms; (5) genetic diversification within the Ponto‐Caspian clade is related to Pleistocene glacial waves; (6) the described morphological differences between the species are not fully diagnostic, and some earlier described differences depend on body size; the differences between freshwater and marine forms exceed those between the different lineages. We suggest a conservative taxonomic approach, using the names S. rizeensis and Salmo labrax for trout from the Black Sea basin and Salmo caspius and Salmo ciscaucasicus for the fish from the Caspian basin.     

Feeding preferences of an invasive Ponto‐Caspian goby for native and non‐native gammarid prey

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A revision of the fossil Canidae (Mammalia) of north‐western Africa

Abstract: The fossil record of the Canidae in North‐western Africa begins near the Miocene–Pliocene boundary with a form close to Nyctereutes, a genus best known in the late Pliocene of Ahl al Oughlam. This site yields two other canids. Vulpes hassani sp. nov. is a small fox, probably ancestral to the modern V. rueppelli, recorded from the Middle Pleistocene onwards. Lupulella paralius sp. nov. is a primitive jackal that probably belongs to the clade of modern African jackals. In the middle Pleistocene, the most common canid is Lupulella mohibi sp. nov., remarkable by its Nyctereutes‐like dentition and primitive skull‐features. These are all endemic forms, but V. vulpes and C. aureus, of northern origin, appear in the course of the middle Pleistocene. Lycaon has a sparse record in the middle and late Pleistocene.     

Recent drastic changes in the gammarid fauna (Crustacea, Amphipoda) of the Vistula River deltaic system in Poland caused by alien invaders

During the last decade of 20th century, the nonindigenous gammarid species Gammarus tigrinus, Dikerogammarus haemobaphes, Pontogammarus robustoides and Obesogammarus crassus invaded the lower Vistula River and its deltaic, partly brackish regions. G. tigrinus, an oligohaline North‐American species, was introduced to western Europe in the 1950s; the remaining three species are oligohaline/freshwater Ponto‐Caspian species. All these species are now invading central and western Europe using the network of man‐made canals connecting different European river systems. In the Vistula River, the native European freshwater gammarid species Gammarus pulex and G. varsoviensis were replaced in the 1920s by the Ponto‐Caspian Chaetogammarus ischnus (syn. Echinogammarus ischnus), which in turn has been outnumbered by the more recent invasions of D. haemobaphes and P. robustoides. In brackish waters, the native Atlantic‐boreal species Gammarus zaddachi and Gammarus duebeni are replaced or at least outnumbered by G. tigrinus, P. robustoides and O. crassus. Possible invasion routes are discussed.     

Is salinity an obstacle for biological invasions?

Invasions of freshwater habitats by marine and brackish species have become more frequent in recent years with many of those species originating from the Ponto‐Caspian region. Populations of Ponto‐Caspian species have successfully established in the North and Baltic Seas and their adjoining rivers, as well as in the Great Lakes–St. Lawrence River region. To determine if Ponto‐Caspian taxa more readily acclimatize to and colonize diverse salinity habitats than taxa from other regions, we conducted laboratory experiments on 22 populations of eight gammarid species native to the Ponto‐Caspian, Northern European and Great Lakes–St. Lawrence River regions. In addition, we conducted a literature search to survey salinity ranges of these species worldwide. Finally, to explore evolutionary relationships among examined species and their populations, we sequenced the mitochondrial cytochrome c oxidase subunit I gene (COI) from individuals used for our experiments. Our study revealed that all tested populations tolerate wide ranges of salinity, however, different patterns arose among species from different regions. Ponto‐Caspian taxa showed lower mortality in fresh water, while Northern European taxa showed lower mortality in fully marine conditions. Genetic analyses showed evolutionary divergence among species from different regions. Due to the geological history of the two regions, as well as high tolerance of Ponto‐Caspian species to fresh water, whereas Northern European species are more tolerant of fully marine conditions, we suggest that species originating from the Ponto‐Caspian and Northern European regions may be adapted to freshwater and marine environments, respectively. Consequently, the perception that Ponto‐Caspian species are more successful colonizers might be biased by the fact that areas with highest introduction frequency of NIS (i.e., shipping ports) are environmentally variable habitats which often include freshwater conditions that cannot be tolerated by euryhaline taxa of marine origin.     

Relative abundance of Ponto‐Caspian gobiids in the lower Vistula River (Poland) 3‐ to 4 years after first appearance

In the years 2000–2001, specimens of two Ponto‐Caspian gobiids (racer goby Neogobius gymnotrachelus and monkey goby Apollonia fluviatilis) were recorded for the first time in the lower Vistula River, which is a part of the central inland corridor used by Ponto‐Caspian species to migrate in Europe. In 2004, seine net surveys were made in the river course to examine relative abundance of the non‐indigenous gobiids in the local small‐fish community. Altogether 4420 specimens with total lengths ranging from 10 to 340 mm (mostly <100 mm) belonging to 18 species were recorded in 70 hauls. Monkey goby was one of the subdominant species (18.1% of total number of fish captured; 64.3% frequency of occurrence in hauls) together with bleak Alburnus alburnus (21.0, 54.3), roach Rutilus rutilus (18.2, 67.1) and three‐spined stickleback Gasterosteus aculaetus (17.3, 37.1). Racer goby was less abundant but quite common (2.5, 32.9), similar to common bream/white bream Abramis brama/Blicca bjoerkna (6.4, 47.1), Eurasian perch Perca fluviatilis (5.7, 57.1), dace Leuciscus leuciscus (4.2, 40.0) and European bitterling Rhodeus sericeus amarus (3.4, 27.1). The study shows that Ponto‐Caspian gobiids dispersed successfully in the lower Vistula, becoming species common to its nearshore zone 3‐ to 4 years after their first appearance.     

Distribution,abundance and condition of invasive Ponto‐Caspian gobies Ponticola kessleri (Günther, 1861), Neogobius fluviatilis (Pallas, 1814), and Neogobius melanostomus (Pallas, 1814) in the Sava River basin,Croatia

Distributions, population densities, invasive potentials and adverse impacts of invasive Ponto‐Caspian gobies on native fauna in the Sava River basin remain unknown, whereby 23 locations in the Sava basin were sampled during a three‐year period (2011–2013). Among the five Ponto‐Caspian goby species previously reported in Croatia, only Neogobius fluviatilis (291), Neogobius melanostomus (177) and Ponticola kessleri (21) specimens were collected. Proterorhinus semilunaris and Babka gymnotrachelus were not found. N. fluviatilis was dominant among the invasive gobies at the majority of locations and almost omnipresent (apart from the upper Sava reaches) in the Sava basin. N. melanostomus was found only in the navigable Sava reaches, but its distribution range still seems to be expanding. The status of P. kessleri invasion remains unclear, as it was only found in 2011 at three locations in the lower Sava reaches. No significant (P > 0.05) increase in average catch‐per‐unit‐effort (CPUE) values was observed during the three‐year period. There is some evidence that a decline in Gobio gobio populations might be expected in response to increasing N. fluviatilis population densities. The findings suggest that further range expansions by the Ponto‐Caspian gobies can be expected in Croatia and the implementation of measures to limit their spreading should be considered.     

Migration and isolation during the turbulent Ponto‐Caspian Pleistocene create high diversity in the crustacean Paramysis lacustris

The Ponto‐Caspian brackish‐water fauna inhabits estuaries and rivers of the Black, Azov and Caspian seas and is fragmented by higher salinity waters and a major interbasin watershed. The fauna is known for the high levels of endemism, complex zoogeographic histories, and as a recent source of successful invasive species. It remains debated whether the Black and Azov Sea brackish‐water populations survived unfavourable Pleistocene conditions in multiple separate refugia or whether the two seas were (repeatedly) recolonized from the Caspian. Using microsatellite and mtDNA markers, we demonstrate deep among‐ and within‐basin subdivisions in a widespread Ponto‐Caspian mysid crustacean Paramysis lacustris. Five genetic clusters were identified, but their relationships did not reflect the geography of the region. The Azov cluster was the most distinct (4–5% COI divergence), despite its geographic position in the corridor between Black and Caspian seas, and may represent a new species. In the northern Black Sea area, the Dnieper cluster was closer to the Caspian cluster than to the neighbouring Danube–Dniester–Bug populations, suggesting separate colonizations of the Black Sea. Overall, the data implied a predominant gene flow from the east to the Black Sea and highlight the importance of Caspian Sea transgressions in facilitating dispersal. Yet, the presence of distinct lineages in the Black Sea points to the persistence of isolated refugial populations that have gained diagnostic differences under presumably high mutation rates and large population sizes. The unfavourable Pleistocene periods in the Black Sea therefore appear to have promoted diversification of the brackish‐water lineages, rather than extirpated them.     

Species Composition and Distribution of Invasive Ponto‐Caspian Amphipods in the Off‐Channel Microhabitats of a Temperate,Lowland Dam Reservoir

The Włocławek Dam Reservoir located on the lower Vistula River (central Poland) is part of the central corridor used by Ponto‐Caspian species to migrate in Europe. It provides a number of habitats suitable for sustaining populations of several non‐indigenous taxa. Four Ponto‐Caspian amphipod species were recorded in the reservoir: Chaetogammarus ischnus, Chelicorophium curvispinum, Dikerogammarus haemobaphes and Pontogammarus robustoides. We found significant differences in amphipod densities and species composition among various microhabitats in off‐channel areas. P. robustoides was the only amphipod species that occurred on very shallow (<1 m) sandy bottom near the shore. It inhabited also other sites but its share in the total number of amphipods and abundance decreased with the distance from the shore. Furthermore, at sites more distant from shore its affinity for plant substratum was higher. D. haemobaphes, C. ischnus and C. curvispinum clearly preferred sites distant from shore, overgrown by macrophytes or covered by mussel shells. Furthermore, the abundance of C. ischnus was negatively correlated with the presence of P. robustoides. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Historic speciation and recent colonization of Eurasian monkey gobies (Neogobius fluviatilis and N. pallasi) revealed by DNA sequences,microsatellites, and morphology

Aim Hidden diversity within an invasive ‘species’ can mask both invasion pathways and confound management goals. We assessed taxonomic status and population structure of the monkey goby Neogobius fluviatilis across Eurasia, comparing genetic variation across its native and invasive ranges. Location Native populations were analysed within the Black and Caspian Sea basins, including major river drainages (Dnieper, Dniester, Danube, Don and Volga rivers), along with introduced locations within the upper Danube and Vistula river systems. Methods DNA sequences and 10 nuclear microsatellite loci were analysed to test genetic diversity and divergence patterns of native and introduced populations; phylogenetic analysis of mtDNA cytochrome b and nuclear RAG‐1 sequences assessed taxonomic status of Black and Caspian Sea lineages. Multivariate analysis of morphology was used to corroborate phylogenetic patterns. Population genetic structure within each basin was evaluated with mtDNA and microsatellite data using F_ST analogues and Bayesian assignment tests. Results Phylogenetic analysis of mitochondrial and nuclear sequences discerned a pronounced genetic break between monkey gobies in the Black and Caspian Seas, indicating a long‐term species‐level separation dating to c. 3 million years. This pronounced separation further was confirmed from morphological and population genetic divergence. Bayesian inference showed congruent patterns of population structure within the Black Sea basin. Introduced populations in the Danube and Vistula River basins traced to north‐west Black Sea origins, a genetic expansion pattern matching that of other introduced Ponto‐Caspian gobiids. Main conclusions Both genetic and morphological data strongly supported two species of monkey gobies that were formerly identified as subspecies: N. fluviatilis in the Black Sea basin, Don and Volga Rivers, and the Kumo‐Manych Depression, and Neogobius pallasi in the Caspian Sea and Volga River delta. Genetic origins of introduced N. fluviatilis populations indicated a common invasion pathway shared with other introduced Ponto‐Caspian fishes and invertebrates.     

Taxonomic remarks concerning ostracods of the Ponto–Caspian Basin

Taxonomic revision of ostracods of the Pliocene–Pleistocene beds of the Caspian Basin from collections of the VNIGRI and analysis of published data on ostracods of the Ponto–Caspian Sea results in synonymization of 16 species names; one species is provided with a new combination, 40 identifications are improved, and 12 erroneous spellings of ostracod names by certain authors are revealed.     

Microsatellite loci for Ponto-Caspian gobies: markers for assessing exotic invasions

We developed and tested eight polymorphic microsatellite loci for Ponto‐Caspian ‘neogobiin’ gobies, many of which are invasive in Eurasia and North America, whose study will aid understanding of the population genetics underlying their success. We tested samples from one to two locations from 12 taxa in the recently revised genera Babka, Benthophilus, Mesogobius, Neogobius = Apollonia, Ponticola and Proterorhinus; including the bighead, Caspian, knout, monkey, racer, round, tadpole and tubenose gobies; and taxa from introduced vs. native populations, those diverging between fresh and marine waters, and those differentiated between the Black and Caspian Seas. Populations conformed to Hardy–Weinberg equilibrium expectations, averaging five to 15 alleles per locus and 0.11 to 0.67 mean heterozygosity. Allelic variation significantly differentiated among all taxa and populations.     

Isolation and characterization of microsatellites in Neogobius kessleri (Perciformes,Gobiidae) and cross‐species amplification within the family Gobiidae

Fourteen polymorphic microsatellites were isolated from Neogobius kessleri, a benthic fish of Ponto‐Caspian origin which has been recently introduced into the Middle and Upper Danube River. Number of alleles and heterozygosity per locus in a sample of 32 fish individuals ranged from two to four and from 0.13 to 0.75, respectively. These primers will be useful in determining the population structure of N. kessleri. In addition, successful cross‐amplification was obtained for four related species, N. melanostomus, N. fluviatilis, N. gymnotrachelus and Proterorhinus marmoratus. These microsatellite loci may be useful for the evaluation of the origin of non‐native goby populations.     

Molecular markers for systematic identification and population genetics of the invasive Ponto‐Caspian freshwater gammarid Dikerogammarus villosus (Crustacea,Amphipoda)

The Ponto‐Caspian amphipod, Dikerogammarus villosus, is an invasive species of many European rivers. First, we show that size difference of nrDNA ITS1 allows discriminating D. villosus from Dikerogammarus bispinosus, a closely related but morphologically hardly distinguishable species. Second, we present two types of polymorphic markers for D. villosus, three microsatellites and two single nucleotide polymorphisms (SNPs) of mtDNA COI gene, which were scored by polymerase chain reaction‐single strand conformational polymorphism (PCR‐SSCP). These markers will be very useful in studying population genetics of D. villosus.     

There is more than one ‘killer shrimp’: trophic positions and predatory abilities of invasive amphipods of Ponto‐Caspian origin

1. Biological invasions are regarded as one of the greatest threats to biological diversity. One of the macroinvertebrate groups with the largest number of invasive species in fresh water are gammarid amphipods. Their omnivorous (including predatory) feeding behaviour may facilitate their spread and establishment in new areas. 2. Dikerogammarus villosus, the ‘killer shrimp’, is a well‐known example of a Ponto‐Caspian gammarid that is a very effective predator and successful coloniser in Europe. There are, however, other invasive Ponto‐Caspian amphipods, which have spread successfully in Northern, Central and Western Europe. Our aim here was to test whether two of such invaders (Pontogammarus robustoides and Dikerogammarus haemobaphes) are also more predacious than a native species (Gammarus fossarum). 3. Stable isotope analysis (δ¹⁵N and δ¹³C) of Ponto‐Caspian amphipods coexisting in a reservoir demonstrated that the trophic positions of P. robustoides and D. haemobaphes were similar to that of D. villosus. Echinogammarus ischnus and Chelicorophium curvispinum occupied the lowest position in the food web, while the native Gammarus fossarum (collected from another waterbody) had an intermediate trophic position. 4. Stomach content analysis of P. robustoides, D. haemobaphes and G. fossarum collected in the field, as well as laboratory feeding experiments, was used to compare diet and feeding preferences among the two invasive and one native species. All three species were omnivorous and predacious. However, the two invasive species (P. robustoides and D. haemobaphes) were more effective predators than G. fossarum and showed a clear preference for animal prey and tissue. 5. Pontogammarus robustoides and D. haemobaphes may, like D. villosus, also be called ‘killer shrimps’ and could have a similar impact as invaders of European freshwater and brackish waterbodies.     

Biogeography and evolution of Abies (Pinaceae) in the Mediterranean Basin: the roles of long‐term climatic change and glacial refugia

Aim The genus Abies exemplifies plant diversification related to long‐term climatic, geological and evolutionary changes. Today, the Mediterranean firs comprise nine species, one natural hybrid and several varieties. Here I summarize current knowledge concerning the origin and evolution of the genus Abies in the Mediterranean Basin and propose a comprehensive hypothesis to explain the isolation and speciation pattern of Mediterranean firs. Location The Mediterranean Basin. Methods The literature on Abies was reviewed, focusing on the morphology, fossil records, molecular ecology, phytosociology and biogeography of the genus in the Mediterranean Basin. Results Abies fossils from the western Mediterranean indicate a wide Tertiary circum‐Mediterranean distribution of the Abies ancestor. Palaeogeographical data also suggest a single eastern Mediterranean Tertiary ancestor. Following the Miocene to Pliocene climate crisis and marine transgressions, the ancestor of the northern Mediterranean firs is hypothesized to have separated into two eastern groups, one on the Balkan Peninsula and the other in Asia Minor. However, land bridges may have permitted gene flow at times. A southward migration of A. alba to refugia, where older fir species may have remained isolated since the Miocene, could explain recent findings indicating that morphologically distant species are more closely related than expected based on such morphological classification. Main conclusions The Abies genus appears to have undergone significant morphological differentiation that does not necessarily imply reproductive isolation. That is, long‐term Mediterranean Basin dryness along a south‐eastern to north‐western gradient may have caused an initial Miocene–Pliocene speciation sequence. Pleistocene glacial cycles probably forced migrations to occur, leading to repeated contact between fir species in glacial refugia.     

The role of intraspecific competition in the dispersal of an invasive fish

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Molecular phylogeny of the genus Helix (Pulmonata: Helicidae)

The vast diversity of land snail forms is insufficiently understood even in seemingly familiar taxa. This holds for Helix Linnaeus, 1758, a genus with several common edible species which comprises the largest Western Palearctic snails. The taxonomy of this genus, which has a centre of diversity in the eastern Mediterranean, has recently undergone significant changes, in both the delimitation of the genus itself and its species‐level systematics. Here, we compare the lineage diversity of Helix, as revealed by two mitochondrial markers, with the conclusions of the recently published morphology‐based taxonomic revision. For the molecular analysis, we assembled a representative data set covering almost all species of the genus as recognized by the mentioned revision. We obtained sequences not only from fresh and preserved soft tissues but also from dried tissue remains (some of them decades old) from shell collections. Our results show that the genus Helix, in the narrow sense proposed by recent studies, is paraphyletic because the genus Tacheopsis was unambiguously revealed as one of the tip branches of Helix. The monophyly of several species, as presently recognized, was not supported; partly, this may be attributed to a lineage diversity overlooked so far. This holds also for the type species of the genus, H. pomatia, which comprises at least one additional lineage. Greece, the Aegean and western Turkey is the core area for the diversity of Helix and its relatives, and the region is probably a major long‐term refuge for large Helicidae. The highest species diversity is found along the Alpide belt from the western Balkans to southern Turkey. The diversity of Helix in Europe, north of Greece and the Apennines, is a result of a single European radiation. Our data also suggest that past human activities likely influenced the present‐day distributions of some species.     

Diurnal behavioural patterns and spread of the Ponto‐Caspian invader Hemimysis anomala G. O. Sars, 1907 (Crustacea,Mysidacea) in the Elbe River,Czech Republic

The Ponto‐Caspian invader Hemimysis anomala was studied in the river Elbe, Czech Republic. The study confirmed further spread of the species: the presence of juveniles and gravid females indicated that H. anomala is established within the Elbe River. Bottom, mid‐water and surface drift samples were collected during 24‐h cycles from July to September 2007. A tendency to remain hidden was the main behavioural strategy of H. anomala in the riverine environment. The mysid was found mainly in the bottom and mid‐water layers, and observed density and mean length of drifting individuals increased with decreasing light levels, being highest at night. Similarly, density and mean length of drifting individuals increased with increasing turbidity. The effect of turbidity on density was particularly apparent during the night samples, suggesting further advantage to night‐drifting individuals. (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)