An experimental approach for tracing olive processing residues in the archaeobotanical record, with preliminary examples from Tell Tweini, Syria

To help the interpretation of possible olive processing residues at archaeological sites, this study examines the changes which occur in pre- and post-charring breakage surfaces of olive stones at tissue level. Fresh olives were experimentally broken before and after charring and heated to different temperatures (230, 330, 430°C) in oxidising and non-oxidising conditions. The structures obtained by the experiment were studied with scanning electron microscopy (SEM) and the characteristics for the different temperatures, oxidation regimes and pre- or post-charring fractures were recorded. Furthermore, the experimental specimens were compared with recent and possibly old fractures of several archaeological olive stones from Tell Tweini, Syria. Criteria to infer their formation are discussed. These criteria could be developed further through more experimental replication and additional charring variables, and verified extensively on archaeobotanical assemblages in future studies. The described structures and alterations in the olive stones can be observed using reflected light microscopy, which would allow the proposed approach to be rather easy to apply in practice.     

The archaeobotanical significance of immature millet grains: an experimental case study of Chinese millet crop processing

We present evidence from ethnography and experimental processing of foxtail millet (Setaria italica (L.) P. Beauv.) in China that spikelets containing incompletely filled (or immature) grains constitute a significant portion of typical millet harvests and are removed along with other by-products after threshing and winnowing. This study provides a baseline for the identification of immature foxtail grains in archaeobotanical assemblages. Immature millet grains are a frequent component of archaeobotanical assemblages in Neolithic and Bronze Age China, and criteria for their recognition are presented based on our modern experimental result and illustrated with archaeobotanical examples from Shandong and Henan. It is seed morphology rather than size that plays a determinative role in the identification of foxtail millet. It is suggested that those grains with a narrow egg-shaped embryo, which is about 5/6 of the whole grain, and having a round shape can be classed as foxtail millet even though they are small, flat and squashed. While different grades of immaturity in millet grains might be defined, the interpretative potential of these appears to be negligible as all immature grains are concentrated in winnowing waste. This study confirms the suggestion that the ratio of immature to mature millet grains can be employed in archaeobotany in considering whether or not early stage crop processing (threshing and winnowing) contributed to the formation of particular archaeological millet assemblages.     

Functional interpretation of archaeobotanical data: Making hay in the archaeological record

Hay malting and hay meadows have long been of fundamental ecological, economic and social importance in temperate Europe. A variety of archaeological sources suggests that hay making may date back to the Iron Age, but direct archaeobotanical evidence for this practice is problematic. Past grassland communities are imperfectly represented and preserved in archaeobotanical assemblages, and ancient meadow and pasture communities may not resemble present-day communities in terms of management practices or botanical composition. This paper explores the potential of FIBS (Functional Interpretation of Botanical Surveys) in the archaeobotanical investigation of ancient grassland management. The botanical composition of present-day grassland communities was analysed in terms of functional attributes (e.g. canopy height) relevant to cutting, grazing and habitat productivity. The utility of these attributes for distinguishing between present-day meadow, pasture and unmanaged grassland communities has been evaluated. Similar analyses were performed on archaeobotanical data from Neolithic to post-Medieval northwestern and central Europe. Functional shifts over time, interpreted in the light of the functional analysis of modern grassland, suggest that hay-making was well established by the Iron Age. Avenues are suggested for the refinement and further development of the FIBS methodology in the archaeobotanical investigation of grassland management.     

Crop processing of <Emphasis Type=Italic>Olea europaea</Emphasis> L.: an experimental approach for the interpretation of archaeobotanical olive remains

Archaeobotanical research, ethnographic observations and laboratory experiments are put together to create model sequences of olive processing, which are developed, presented and explored as an aid for the interpretation of rich archaeobotanical assemblages of Olea. We conclude that the remains of different processing stages are reasonably distinctive in the archaeobotanical record and assist in the identification of different types of olive remains, such as fragmented olive stones, the inner kernels, and fruit flesh     

Changes in cereal cultivation during the Iron Age in southern Sweden: a compilation and interpretation of the archaeobotanical material

Macrofossil data from 73 sites dating to the south Swedish Iron Age (500 b.c.–a.d. 1100) have been compiled and analyzed in order to elucidate long term changes in cereal cultivation. The analyses indicate that “permanent field” agriculture was established at the end of the Bronze Age utilizing Hordeum vulgare var vulgare as a primary crop and Triticum aestivum ssp vulgare/compactum, Triticum spelta/dicoccum/monococcum, Avena sativa and Secale cereale as secondary crops. An observed change towards the end of Roman Iron Age (1–a.d. 400) is the expansion of Secale cereale and Avena sativa cultivation. Evidence also suggests that winter sowing of the former commenced at the latest during the eighth, ninth and tenth centuries a.d. The introduction of winter sowing possibly coincided with the establishment of crop rotation agriculture. During most of the Iron Age southern Sweden displays significant regional variations with regards to cereal cultivation practice. There is however evidence that a more homogenous agriculture appeared across the investigated area from the beginning of the Viking Age (a.d. 800–1100) onwards.     

Towards the archaeobotanical identification of intensive cereal cultivation: present-day ecological investigation in the mountains of Asturias, northwest Spain

The region of Asturias, northwest Spain, is highly unusual in that a cereal crop (spelt wheat) is cultivated on a garden scale using horticultural methods. A floristic survey was made of the weeds in 65 spelt plots in this region. The ecological attributes of the weed species were then measured and compared to an earlier study of the functional characteristics of weeds associated with pulse crops on the Greek island of Evvia. In this earlier study, it was possible to distinguish between plots cultivated intensively on a garden-scale and plots cultivated extensively in fields, on the basis of a suite of functional attributes of the weed species. The cereal plots from Asturias were correctly identified as gardens on the basis of the same suite of attributes. The Asturias plots were also compared to weed associations from autumn- and spring-sown crops in Germany, using a different suite of attributes, and were classified either as autumn-sown or ambiguously. This is consistent with the sowing time in Asturias, which is spread over late autumn to winter. These results demonstrate that the suites of functional attributes identified to distinguish intensive and extensive cultivation, and to recognise sowing time, can be applied in another geographical area and to another crop type. This paves the way for the application of these attributes to the identification of past agricultural practices from archaeological weed assemblages. Received September 12, 2001 / Accepted December 12, 2002     

An investigation of processing and consumption of pulses among prehistoric societies: archaeobotanical, experimental and ethnographic evidence from Greece

Pulses have constituted an important food source for prehistoric communities in the Old World, yet little is known as regards their processing for consumption through the archaeobotanical record. This paper provides an overview of archaeobotanical evidence for the use of pulses in prehistoric Greece based on two case studies from the north, and explores (a) their preparation for consumption, in particular their detoxification and (b) the consumption of pulses as a component of ordinary daily meals in prehistoric times, as well as those for special occasions, within a context of feasting and ritual. The paper examines charred remains of Vicia ervilia (bitter vetch) and Lathyrus sativus (grass pea) from early Bronze Age Agios Athanasios and late Neolithic Kremasti Koiladas, respectively, as the former provides a basis for a pilot exploration of pulse detoxification and the latter, due to its origin, offers a rare opportunity to discuss the context of consumption. In the pilot exploration of pulse seed preparation for consumption, the inner cotyledon morphology of modern V. ervilia seeds which were experimentally processed with water and pounding was examined macroscopically and through SEM micrographs. Preliminary observations suggest that intentional splitting of pulse seeds as part of processing for consumption as food may be recognisable in the archaeobotanical record. Processing with water may also be detected. The particular context of the Kremasti finds suggests that pulses, in this particular case L. sativus, may have constituted special foods for particular occasions, loaded with symbolic meaning.     

On the advantages of crossed mandibles: an experimental approach

The importance of the crossed mandibles to crossbills for foraging on conifer cones was studied by removing most of the crossed portion of the mandibles of two Red Crossbills L. curvirostra. The foraging rate of these two bill-altered crossbills on the cones of three species of conifers was compared to their rates prior to bill alteration and to two controls. The mandible crossing proved essential for extracting seeds from closed cones. However, as cones open the bill crossing becomes less critical. The mandible crossing appears to be one of several adaptations of crossbills that have extended the period during which conifer seeds can be exploited effectively.     

Janospira - an Ordovician microfossil in search of a Phylum

Janospira is described from early Ordovician (Arenig) rocks of northern Spitsbergen. It is a curious microfossil, probably calcareous, about 1 mm in length, made up of an initial coil which expands distally into a straight tube, at the same time as producing a narrower tube almost in line with the first but in the opposite direction. Although showing some similarities to Foraminifera, molluscs and polychaetes, there are objections to its inclusion in any of these groups, and it is equally probable that it belongs to an unknown group with a planktic early growth stage.     

Photoacclimation in Antarctic bottom ice algae: an experimental approach

The aim of the study was to investigate the capacity of microalgae from the extremely low light habitat of bottom ice to acclimate to different light conditions. During austral spring 1997 the bottom layer of land-fast ice in Terra Nova Bay displayed high values of microalgal biomass up to 2,400 μg Chla L⁻¹ concentrated in a few centimetres ice layer. The algal assemblage was dominated by benthic pennate diatoms. Photoacclimation of the microalgae was addressed in terms of pigment spectra and photosynthetic parameters. Immediate and long term (minutes to days) changes in the photoprotective pigments (DD-cycle) were analysed. Severe photodamage occurred in microalgal assemblages exposed to high light. However, part of the bottom ice algal community showed a notable ability to acclimate to high irradiance levels. Changes in photosynthetic parameters preceded the sudden abrupt changes in pigment synthesis and the rapid increase in biomass and growth rates. This article belongs to a special topic: Five articles on Sea-ice communities in Terra Nova Bay (Ross Sea), coordinated by L. Guglielmo and V. Saggiomo, appear in this issue of Polar Biology. The studies were conducted in the frame of the National Program of Research in Antarctica (PNRA) of Italy.     

Predicting and annotating catalytic residues: an information theoretic approach.

We introduce a computational method to predict and annotate the catalytic residues of a protein using only its sequence information, so that we describe both the residues' sequence locations (prediction) and their specific biochemical roles in the catalyzed reaction (annotation). While knowing the chemistry of an enzyme's catalytic residues is essential to understanding its function, the challenges of prediction and annotation have remained difficult, especially when only the enzyme's sequence and no homologous structures are available. Our sequence-based approach follows the guiding principle that catalytic residues performing the same biochemical function should have similar chemical environments; it detects specific conservation patterns near in sequence to known catalytic residues and accordingly constrains what combination of amino acids can be present near a predicted catalytic residue. We associate with each catalytic residue a short sequence profile and define a Kullback-Leibler (KL) distance measure between these profiles, which, as we show, effectively captures even subtle biochemical variations. We apply the method to the class of glycohydrolase enzymes. This class includes proteins from 96 families with very different sequences and folds, many of which perform important functions. In a cross-validation test, our approach correctly predicts the location of the enzymes' catalytic residues with a sensitivity of 80% at a specificity of 99.4%, and in a separate cross-validation we also correctly annotate the biochemical role of 80% of the catalytic residues. Our results compare favorably to existing methods. Moreover, our method is more broadly applicable because it relies on sequence and not structure information; it may, furthermore, be used in conjunction with structure-based methods.     

Genome editing in cereal crops: an overview

Transgenic Research - Genome-editing technologies offer unprecedented opportunities for crop improvement with superior precision and speed. This review presents an analysis of the current state of...     

Controlling factors of phytoplankton assemblages in wetlands: an experimental approach

The aim of this work is to answer some questions like: what factors control the phytoplankton assemblage? What factor or factors are perturbing the assemblage? What factors are driving or maintaining the stability? Are the different responses to the control factors dependent on the hierarchy level? For that, we tested experimentally the influence of herbivory, planktivory, nutrients and sediment on phytoplankton assemblages and its stability from a hypertrophic wetland (Las Tablas de Daimiel National Park, Spain) in three microcosm experiments. The study of the steady state phytoplankton assemblages in this perturbed system could point out some underlying processes instead of competition. The presence of planktivorous fish and the different composition of zooplankton have minor importance in phytoplankton composition. Conversely, sediment is of paramount importance, promoting a more diverse phytoplankton assemblage. When sediment or nutrient pulses are absent, phytoplankton become dominated by slow-growing algae, present but not dominant in the studied wetland community. We suggest that alternate states of phytoplankton assemblages in a eutrophic wetland occur as a sequence of substitutions persistently altered by perturbations, thanks to the close coupling with sediment, and that possibly trophic relationships are irrelevant.     

The toxicity of aphicide residues to beneficial invertebrates in cereal crops

The toxicity of dimethoate, deltamethrin and pirimicarb residues to Bembidion lampros and Coccinella septempunctata was evaluated by confining groups of insects to winter wheat foliage and soil for 24 h at different times after treatment in the field. Flag leaf residues were found to be more toxic than first leaf residues: soil residues were the least toxic with pirimicarb showing virtually no soil toxicity. In general, dimethoate and deltamethrin showed similar levels of foliar toxicity with flag leaf toxicity on the first day after treatment being in the range 60–80% for B. lampros; deltamethrin was however, less toxic than dimethoate at ground level. Both of these products were more toxic than pirimicarb. The long-term exposure of insects, surviving the 24 h bioassays, to treated soil at different times following application resulted in further mortality and provided estimates of the maximum levels of mortality that populations of predators might suffer migrating into the crop at different times following application. Dimethoate was shown to be particularly harmful at the current recommended field application rate and reduced doses were proposed to limit the severity of the initial effects.     

Restrictions to RNA virus adaptation: an experimental approach

Some basic properties of RNA viruses are their high mutation rate, their enormous population sizes and their short generation time. These properties allow RNA virus populations to quickly explore fitness landscapes. A great adaptability has been amply demonstrated in experimental, as well as in natural, populations of RNA viruses. However, at least from a theoretical point of view, a limit to the extent of viral adaptation may exist as a consequence of adaptive trade-offs arising during evolution in changing environmental conditions. Here, I review previously published results searching for such fitness trade-offs. The following scenario has been explored: the cost of host-range expansion, the cost of resistance to antiviral drugs, and the adaptation to different population densities. Despite the environmental conditions tested, results show a common pattern: whenever a virus adapt to a simple environmental situation it pays a cost in terms of adaptation to alternative situations. However, in those cases where the virus has been simultaneously adapted to different environmental conditions, this cost disappears or, at least, is greatly reduced. Finally, and as another factor imposing a limit to their speed of adaptation, I review results showing that clonal interference also plays an important role during viral evolution. This revised version was published online in August 2006 with corrections to the Cover Date.