The Saprotrophic Bacterial Complex in the Raised Peat Bogs of Western Siberia

The population density of bacteria in peat deposits along the landscape profile of the Vasyugan Marsh has been found to be as high as tens of millions of CFU/g peat. The abundance and diversity of bacteria increased with depth within the peat deposit, correlating with an increasing level of peat degradation. Variations in these parameters with depth and season were greater in peat deposits located in transaccumulative and transitional positions than in the sedge-sphagnum bogs located at the eluvial region of the profile. In the upper 1-m-thick layer of the peat deposits studied, bacilli, represented by five species, dominated, whereas, in the deeper layers, spirilla and myxobacteria prevailed. These bacteria are major degraders of plant polymers. Unlike the bacterial communities found in the peat deposits of European Russia, the dominant taxa in the studied peat deposits of western Siberia are represented by bacteria resistant to extreme conditions.__________Translated from Mikrobiologiya, Vol. 74, No. 4, 2005, pp. 545–551.Original Russian Text Copyright © 2005 by Golovchenko, Sannikova, Dobrovol’skaya, Zvyagintsev.     

Activity and metabolic regulation of methane production in deep peat profiles of boreal bogs

The potential activity of methane production was determined in the vertical profiles of the peat deposits of three bogs in Tver oblast, which were representative of the boreal zone. In the minerotrophic fen, the rates of methane production measured throughout the profile did not change significantly with depth and comprised 3-6 ng CH4-C g(-1) h(-1). In ombrotrophic peat bogs, the rate did not exceed 5 ng CH4-C g(-1) h(-1) in the upper layer of the profile (up to 1.5 m) and increased to 15-30 ng CH4-C g(-1) h(-1) in the deep layers of the peat deposits. The distribution of fermentative microorganisms and methanogens in the profiles of peat deposits was uniform in all the studied bogs. In bog water samples, the presence of butyrate (up to 14.1 mg l(-1)) and acetate (up to 2.4 mg l(-1)) was revealed throughout the whole profile; in the upper 0.5-m layer of the ombrotrophic bogs, formate (up to 8.9 mg l(-1)) and propionate (up to 0.3 mg l(-1)) were detected as well. The arrangement of local maxima of the fatty acid content and methanogenic activity in the peat deposits, as well as the decrease in the acetate concentrations during summer, support the hypothesis that the initial substrates for methanogenesis come from the upper peat layers. It was established that the addition of sulfate and nitrate inhibits methane production in peat samples: the changes in the concentrations, recorded in situ, may also influence the methane content in peat layers.     

Activity and metabolic regulation of methane production in deep peat profiles of boreal bogs

The potential activity of methane production was determined in the vertical profiles of the peat deposits of three bogs in Tver oblast, which were representative of the boreal zone. In the minerotrophic fen, the rates of methane production measured throughout the profile did not change significantly with depth and comprised 3–6 ng CH₄-C g^?1 h^?1. In ombrotrophic peat bogs, the rate did not exceed 5 ng CH₄-C g^?1 h^?1 in the upper layer of the profile (up to 1.5 m) and increased to 15–30 ng CH₄-C g^?1 h^?1 in the deep layers of the peat deposits. The distribution of fermentative microorganisms and methanogens in the profiles of peat deposits was uniform in all the studied bogs. In bog water samples, the presence of butyrate (up to 14.1 mg 1^?1) and acetate (up to 2.4 mg 1^?1) was revealed throughout the whole profile; in the upper 0.5-m layer of the ombrotrophic bogs, formate (up to 8.9 mg 1^?1) and propionate (up to 0.3 mg 1^?1) were detected as well. The arrangement of local maxima of the fatty acid content and methanogenic activity in the peat deposits, as well as the decrease in the acetate concentrations during summer, support the hypothesis that the initial substrates for methanogenesis come from the upper peat layers. It was established that the addition of sulfate and nitrate inhibits methane production in peat samples; the changes in the concentrations, recorded in situ, may also influence the methane content in peat layers.     

The structure of the micromycete complexes of oligotrophic peat deposits in the southern taiga subzone of West Siberia

The analysis of the micromycete complexes of oligotrophic peat deposits in the Vasyugan Marsh by direct count and culture methods showed that the micromycete carbon comprises no more than 3% of the total peat carbon and that the microscopic fungal biomass varies from 2 to 13 tons/hectare, depending on the season and the peat deposit thickness. Fungal spores were found in all layers of the peat deposits, whereas the mycelium was found only in the active peat layer. The high abundance of eukaryotic cells in the peats was due to the presence of yeastlike cells rather than fungal spores. Analyses by culture methods showed that micromycetes were present in all peat layers and that their abundance tended to decrease with depth, except for yeasts, which were uniformly distributed in a vertical direction. The micromycete complexes of the peat deposits were similar in the diversity and abundance of dominant species but differed in the composition of minor species. Peat yeasts were dominated by ascomycetes.     

The Structure of the Micromycete Complexes of Oligotrophic Peat Deposits in the Southern Taiga Subzone of West Siberia

The analysis of the micromycete complexes of oligotrophic peat deposits in the Vasyugan Marsh by direct count and culture methods showed that micromycete carbon comprises no more than 3% of the total peat carbon and that the microscopic fungal biomass varies from 2 to 13 tons/hectare, depending on the season and the peat deposit thickness. Fungal spores were found in all layers of the peat deposits, whereas the mycelium was found only in the active peat layer. The high abundance of eukaryotic cells in the peats was due to the presence of yeastlike cells rather than fungal spores. Analyses by culture methods showed that micromycetes were present in all peat layers and that their abundance tended to decrease with depth, except for yeasts, which were uniformly distributed in a vertical direction. The micromycete complexes of the peat deposits were similar in their diversity and abundance of dominant species but differed in the composition of minor species. Peat yeasts were dominated by ascomycetes.     

Methanotrophs of the psychrophilic microbial community of the Russian Arctic tundra

In tundra, at a low temperature, there exists a slowly developing methanotrophic community. Methane-oxidizing bacteria are associated with plants growing at high humidity, such as sedge and sphagnum; no methonotrophs were found in polytrichous and aulacomnious mosses and lichens, typical of more arid areas. The methanotrophic bacterial community inhabits definite soil horizons, from moss dust to peat formed from it. Potential ability of the methanotrophic community to oxidize methane at 5 degrees C enhances with the depth of the soil profile in spite of the decreasing soil temperature. The methanotrophic community was found to gradually adapt to various temperatures due to the presence of different methane-oxidizing bacteria in its composition. Depending on the temperature and pH, different methanotrophs occupy different econiches. Within a temperature range from 5 to 15 degrees C, three morphologically distinct groups of methanotrophs could be distinguished. At pH 5-7 and 5-15 degrees C, forms morphologically similar to Methylobacter psychrophilus predominated, whereas at the acidic pH 4-6 and 10-15 degrees C, bipolar cells typical of Methylocella palustris were mostly found. The third group of methanotrophic bacteria growing at pH 5-7 and 5-10 degrees C was represented by a novel methanotroph whole large coccoid cells had a thick mucous capsule.     

Land use increases the recalcitrance of tropical peat

Tropical peat carbon compound composition (CCC) is a highly understudied subject. Advanced understanding of peat CCC and carbon dynamics in differing conditions is desperately needed due to large-scale utilization of these peatlands. We studied the CCC—i.e. the hemicellulosic carbohydrate and uronic acid composition and concentrations of extractives, cellulose, acid-soluble lignin and acid-insoluble lignin—in association with peat profile depth and physical structure of peat, under representative, common land uses. Samples were gathered from an undrained forest and three sites altered 20–30 years prior to the study, which in aggregate form a continuum of increasing land-use intensity (drainage-affected forest; drained and deforested degraded open site; drained and deforested site under cultivation) in Central Kalimantan, Indonesia. Peat samples were taken from depths between 10 and 115 cm that covered mostly oxic, frequently waterlogged and permanently waterlogged, anoxic conditions. Our results demonstrated greater modification of peat properties when both vegetation and hydrological conditions were altered. The differences between sites were mainly present in the topmost peat and decreased with depth. Peat located at the surface contained more labile compounds (hemicelluloses, extractives, uronic acids, cellulose) on forest sites than at the most intensively altered open sites, where peat was enriched with recalcitrant acid insoluble lignin. The effect of drainage was evident in the drained forest site, where at the approximate median water table depth peat more closely resembled open sites in terms of the peat properties. The increased recalcitrance of peat in reclaimed areas has been a result of enhanced decomposition, reduced litter input rates and, at open sites also by repeated fires.     

High abundance of planctomycetes in anoxic layers of a Sphagnum peat bog

The depth distribution of planctomycete abundance has been examined in six different sites of the Sphagnum peat bog in Bakchar, Tomsk oblast, Russia. In situ hybridization of peat with the fluorescently labeled oligonucleotide probes PLA46 and PLA886, reported to be group-specific for representatives of the phylum Planctomycetes, revealed two distinct population maxima of these bacteria in all of the profiles examined. The first population maximum was detected in the uppermost, oxic layer of the bog profile, while the second maximum was located at a depth of 30 cm below the water table level. The population sizes of planctomycetes in the uppermost layer and at a depth of 30 cm were of the same order of magnitude and comprised 0.5-1.5 x 10(7) and 0.4-0.7 x 10(7) cells per g of wet peat, respectively. Only 25-30% of the total number of planctomycete cells in the anoxic layer could be detected if the probe PLA886, whose target specificity is restricted to taxonomically characterized aerobic planctomycetes of the genera Gemmata, Planctomyces, Pirellula, and Isosphaera, was used alone. Other planctomycete cells in this layer were detected only with the probe PLA46, which possesses a much wider scope. This suggests the affiliation of these organisms with a yet undescribed phylogenetic subgroup within the Planctomycetes.     

Testate Amoebae Assemblages (Rhizopoda and Testacea) in the Peat Deposits of the Floodplain Terrace Swamp (the South of Forested Zone of Western Siberia)

Testate amoebae assemblages were investigated in the peat deposits of the floodplain terrace swamp located in the southern taiga subzone of Western Siberia. It was revealed that tests of amoebae were well preserved in the minerotrophic peat. Variations in the structure of assemblages show that these bioindicators are sensitive to changes in the environment. The dynamics of the water table depth in the swamp within an 8500-year period was determined according to the analysis of testate amoebae. It reflects the fluctuations of climate humidity during the Holocene.     

Vertical structure of bacterial communities in peats of the Yakhroma river floodplain

The abundance and taxonomic structure of soil bacterial communities have been studied in different geomorphological parts of the Yakhroma floodplain. It has been found that the numbers of bacteria reach a peak in calcareous peat soil under forest near the floodplain terrace, decreasing to a minimum in soddy alluvial soil near the riverbed. All soils are characterized by the presence of different ecological-trophic bacterial groups capable of peat destruction. Seasonal dynamics of the structure of bacterial communities and, in some soil types, its spatial dynamics accounted for by changes in the botanical structure of peat across its profile have been revealed. All peat soils in the floodplain have high contents of organic matter and neutral pH and, therefore, are favorable biotopes for the development of saprotrophic bacteria. This, in turn, largely accounts for high productivity and stability of this agroecosystem as a whole.     

The bacterial population of a blanket peat

The number of aerobic bacteria in a blanket peat decreased with depth from 26 times 10⁶/g dry peat in the surface layers to 0.5 times 10⁶/g dry peat at 30–40 cm down the profile, thereafter remaining roughly constant. Obligate psychrophiles comprised <2.5% of this population. Anaerobes were most numerous, 9 times 10⁶/g dry peat at 6–10 cm depth, decreasing to 0.5 times 10⁶/g at 20–30 cm. Calculations indicated that these counts, 10³–10⁴-fold lower than the direct counts, substantially underestimated the active microbial population. Gram negative rods, the predominant aerobes in the surface layers, were replaced by unidentified Bacillus strains at 10–20 cm depth but became increasingly more numerous further down the profile. The Gram negative rods were the most numerous organisms/m² but the Bacillus strains, one third of which were present as spores, made the largest contribution to the biomass/m². Gram positive cocci, Arthrobacter and, infrequently, Nocardia were also isolated. Actinomyces -like forms were the predominant obligate anaerobes and were approximately three times more numerous than clostridia and a curved Gram negative rod.     

Methanotrophs of the Psychrophilic Microbial Community of the Russian Arctic Tundra

In tundra, at a low temperature, there exists a slowly developing methanotrophic community. Methane-oxidizing bacteria are associated with plants growing at high humidity, such as sedge and sphagnum; no methanotrophs were found in polytrichous and aulacomnious mosses and lichens, typical of more arid areas. The methanotrophic bacterial community inhabits definite soil horizons, from moss dust to peat formed from it. The potential ability of the methanotrophic community to oxidize methane at 5°C enhances with the depth of the soil profile in spite of the decreasing soil temperature. The methanotrophic community was found to gradually adapt to various temperatures due to the presence of different methane-oxidizing bacteria in its composition. Depending on the temperature and pH, different methanotrophs occupy different econiches. Within a temperature range from 5 to 15°C, three morphologically distinct groups of methanotrophs could be distinguished. At pH 5–7 and 5–15°C, forms morphologically similar to Methylobacter psychrophilus predominated, whereas at the acidic pH 4–6 and 10–15°C, bipolar cells typical of Methylocella palustris were mostly found. The third group of methanotrophic bacteria growing at pH 5–7 and 5–10°C was represented by a novel methanotroph whose large coccoid cells had a thick mucous capsule.     

Studies on the peat deposits of the island of Foula,Shetland

Summary

The results of macroscopic and pollen analytical studies on the island of Foula, Shetland, are described and discussed. The tree pollen count never exceeds 11% of the total pollen count in the pollen diagrams. The dominant vegetation of the island during the period which is represented by the peat deposits is shown to have been Ericaceous heath. Macroscopic studies show that although several species of tree did once occur on the island they were never a dominant part of the island's vegetation. It was found impossible to date the peat deposits on the basis of pollen diagrams in view of the extremely low values of the tree pollen curves.     

High abundance of planctomycetes in anoxic layers of a Sphagnum peat bog

The depth distribution of planctomycete abundance has been examined in six different sites of the Sphagnum peat bog Bakchar, Tomsk oblast, Russia. In situ hybridization of peat with the fluorescently labeled oligonucleotide probes PLA46 and PLA886, reported to be group-specific for representatives of the phylum Planctomycetes, revealed two distinct population maxima of these bacteria in all of the profiles examined. The first population maximum was detected in the uppermost, oxic layer of the bog profile, while the second maximum was located at a depth of 30 cm below the water table level. The population sizes of planctomycetes in the uppermost layer and at a depth of 30 cm were of the same order of magnitude and comprised 0.5–1.5 × 10⁷ and 0.4?0.7 × 10⁷ cells per g^?1 of wet peat, respectively. Only 25–30% of the total number of planctomycete cells in the anoxic layer could be detected if the probe PLA886, whose target specificity is restricted to taxonomically characterized aerobic planctomycetes of the genera Gemmata, Planctomyces, Pirellula, and Isosphaera, was used alone. Other planctomycete cells in this layer were detected only with the probe PLA46, which possesses a much wider scope. This suggests the affiliation of these organisms with a yet undescribed phylogenetic subgroup within the Planctomycetes.     

The large Amazonian peatland carbon sink in the subsiding Pastaza‐Marañón foreland basin,Peru

The carbon (C) dynamics of tropical peatlands can be of global importance, because, particularly in Southeast Asia, they are the source of considerable amounts of C released to the atmosphere as a result of land‐use change and fire. In contrast, the existence of tropical peatlands in Amazonia has been documented only recently. According to a recent study, the 120 000 km² subsiding Pastaza‐Marañón foreland basin in Peruvian Amazonia harbours previously unstudied and up to 7.5 m thick peat deposits. We studied the role of these peat deposits as a C reserve and sink by measuring peat depth, radiocarbon age and peat and C accumulation rates at 5–13 sites. The basal ages varied from 1975 to 8870 cal yr bp , peat accumulation rates from 0.46 to 9.31 mm yr^?1 and C accumulation rates from 28 to 108 g m^?2 yr^?1. The total peatland area and current peat C stock within the area of two studied satellite images were 21 929 km² and 3.116 Gt (with a range of 0.837–9.461 Gt). The C stock is 32% (with a range of 8.7–98%) of the best estimate of the South American tropical peatland C stock and 3.5% (with a range of 0.9–10.7%) of the best estimate of the global tropical peatland C stock. The whole Pastaza‐Marañón basin probably supports about twice this peatland area and peat C stock. In addition to their contemporary geographical extent, these peatlands probably also have a large historical (vertical) extension because of their location in a foreland basin characterized by extensive river sedimentation, peat burial and subsidence for most of the Quaternary period. Burial of peat layers in deposits of up to 1 km thick Quaternary river sediments removes C from the short‐term C cycle between the biosphere and atmosphere, generating a long‐term C sink.     

Die Sukzession der Testaceen-Assoziationen (Protozoa,Rhizopoda) im rezenten und subfossilen Sphagnum des Obersees bei Lunz (Niederösterreich)

The Succession of Testacea-Associations (Protozoa, Rhizopoda) in Recent and Subfossil Sphagnum from the Obersee near Lunz (Austria). The present paper deals with the Testacean micro-distribution and succession on Sphagnum plants and in a peat profile from the Sphagnum bog of the Obersee near Lunz (Austria). The vertical distribution of living Testacea on Sphagnum plants from the Sphagnum bog of the Obersee near Lunz (Austria) was studied as well as the succession of the Testacean nekrocoenoses in a peat profile (0–100 cm). In the green portion of Sphagnum species possessing Zoochlorellae (Amphitrema flavum, Heleopera sphagni, Hyalosphenia papilio) and Centropyxis aculeata are living. The remaining species are distributed in the lower (dead brown) zone. Active animals were seen to a depth of 18 cm. Some Testacea individuals were able to keep alive again to a depth of 45 cm. Certain species of the Forest Moss Type (Trinema lineare, T. enchelys, Euglypha laevis) dominated in recent Sphagnum and in the peat profile to 12 cm depth. In this time the number of specimens increased. At a depth of 18 cm several typical sediment species of the genus Difflugia (amphora, corona, acuminata, lebes) appeared and the populations of Centropyxis aculeata showed characteristics of sediment-inhabiting individuals (tests covered with mineral particles and vaulted, no spines).     

Peat carbon stocks in the southern Mackenzie River Basin: uncertainties revealed in a high-resolution case study

The organic carbon (C) stocks contained in peat were estimated for a wetland‐rich boreal region of the Mackenzie River Basin, Canada, using high‐resolution wetland map data, available peat C characteristic and peat depth datasets, and geostatistics. Peatlands cover 32% of the 25 119 km² study area, and consist mainly of surface‐ and/or groundwater‐fed treed peatlands. The thickness of peat deposits measured at 203 sites was 2.5 m on average but as deep as 6 m, and highly variable between sites. Peat depths showed little relationship with terrain data within 1 and 5 km, but were spatially autocorrelated, and were generalized using ordinary kriging. Polygon‐scale calculations and Monte Carlo simulations yielded a total peat C stock of 982–1025 × 10¹² g C that varied in C mass per unit area between 53 and 165 kg m^?2. This geostatistical approach showed as much as 10% more peat C than calculations using mean depths. We compared this estimate with an overlapping 7868 km² portion of an independent peat C stock estimate for western Canada, which revealed similar values for total peatland area, total C stock, and total peat C mass per unit area. However, agreement was poor within ～875 km² grids owing to inconsistencies in peatland cover and little relationship in peat depth between estimates. The greatest disagreement in mean peat C mass per unit area occurred in grids with the largest peatland cover, owing to the spatial coincidence of large cover and deep peat in our high‐resolution assessment. We conclude that total peat C stock estimates in the southern Mackenzie Basin and perhaps in boreal western Canada are likely of reasonable accuracy. However, owing to uncertainties particularly in peat depth, the quality of information regarding the location of these large stocks at scales as wide as several hundreds of square kilometers is presently much more limited.     

Methane oxidation potential and preliminary analysis of methanotrophs in blanket bog peat using molecular ecology techniques

Abstract: The potential for methane oxidation was measured, and methanotroph gene sequences studied, in a peat core from the Moorhouse Nature Reserve, UK. Methane oxidation potential was observed in all depths of the peat core (down to 30 cm), and was inhibited by addition of acetylene, indicating the involvement of methane-oxidising bacteria. A peak of activity was shown in the 10–12 cm horizon, below which activity decreased with depth. Above this horizon, methane oxidation was relatively high and showed little change with depth. 16S rDNA libraries from several sections of the peat core were screened with methanotroph 16S rDNA probes designed to detect the genera Methylomonas, Methylococcus, Methylobacter and Methylosinus . Two clones, MHP14 and MHP17, hybridised strongly with the Methylosinus probe and upon complete sequencing and phylogenetic analysis were shown to group closely to the Methylosinus/Methylocystis genera of methanotrophs. However, the clones do form a distinct branch of their own, supported by BOOTSTRAP values, and may represent a novel group of acidophilic methanotrophs which have yet to be cultured.     

Spatial variation of redox and trace metal geochemistry in a minerotrophic fen

Pore water and solid phase samples were collected from the upper 50 cm of a peat profile at four sites within a 10 m² area in Kleinstuck Marsh, a minerotropic fen located in Kalamazoo, MI. Although the chosen sites are in close proximity to each other, they differ with respect to vegetation species and density. Pore water analyses for a suite of redox sensitive species (pH, alkalinity, dissolved Mn(II), Fe(II), Fe(III), sulfide, sulfate), together with Fe and Mn distributions inferred from operationally-defined sequential extractions, demonstrate that Fe(III) and Mn(IV) reduction occurs in the shallow peat at three of the four sites. At the fourth site, the only site containing the invasive purple loosestrife (Lythrum salicaria), accumulation of dissolved sulfide in the pore waters and increased levels of oxidizable phases in the shallow peat point to increased net sulfate reduction relative to the other three sites. Speciation calculations indicate that pore water concentrations of phosphate, especially below ∼10 cm depth, are largely controlled by the solubility of phases such as strengite or hydroxylapatite, and that at all but the loosestrife site, dissolved Ca and Mg are likely determined by carbonate solubility. Fe and Mn distribution among operationally defined solid phase fractions are consistent with reductive dissolution of FMO in the uppermost peat, leading to precipitation of Fe sulfides and Mn carbonates deeper in the peat profile. Zn, Co, Cr and Ni distributions are consistent with release from FMO to form sulfides or organic associations deeper in the peat. Pb and Cu may also be released by reductive dissolution of FMO, or more likely, shift from primary association with organic matter to increased association with sulfides under more sulfidic conditions. This study highlights the existence of extreme lateral variations in peat pore water and solid phase geochemical profiles, even over quite small areas.     

Vertical distribution and phylogenetic composition of bacteria in the Eastern Tropical North Pacific Ocean

The vertical community structure of bacteria along a depth profile in the Eastern Tropical North Pacific Ocean (13 degrees N, 104 degrees W) was studied by flow cytometry measurement and 16S rRNA gene clone libraries analysis. Picoeukaryotes and Synechococcus peaked at 30 m and decreased sharply below 50 m, while Prochlorococcus peaked at both 30 and 100 m layers and disappeared below 200 m. Heterotrophic bacteria peaked above shallow thermocline and decreased along the depth profile. Sequences of total 322 clones from four clone libraries (10, 100, 1000, and 3000 m) clustered into nine major lineages. gamma-Proteobacteria dominated all the depths and occupied almost the whole bacterial community at the 3000 m. alpha-Proteobacteria was abundant throughout the water column except near the sea bottom, and delta-Proteobacteria peaked at the 1000 m depth. Cyanobacteria were primarily limited to the photic zone, and the genetic diversity of Prochlorococcus showed a good correlation with niche adaptation. The appearance of the Cytophaga-Flexibacter-Bacteroides (CFB) group did not show a clear relationship with depth. Actinobacteria were found both in the photic zone and in deep water. Planctomyetes, Acidobacteria, and Verrucomicrobia were present as minor groups and more dominant in the deeper layers of water.