茉莉酸信号受体COI蛋白家族的分子进化与基因表达分析

茉莉酸(Jasmonic acid,JA)存在于所有高等植物中,是植物对病原微生物和虫害防御反应的关键激素。在茉莉酸信号转导中,COI1(COR-insensitive 1)作为茉莉酸信号受体蛋白在其中发挥关键作用。本研究采用生物信息学方法,从藻类、苔藓类、蕨类、裸子及单、双子叶植物多谱系对COI蛋白家族进行比较基因组学研究,并取得以下结果:(1)同源基因鉴定结果发现,在所选的7种陆生植物中一共鉴定了55个COIs同源基因,然而,在低等的水生植物包括绿藻类(Chlorophytes)、红藻类(Rhodophytes)、硅藻类(Bacillariophytes)、灰胞藻类(Glaucophytes)及褐藻类(Phaeophytes)等基因组中均未发现其同源基因;(2)系统进化树分析表明,植物COI蛋白家族可以分为4个保守的亚家族,且在陆生植物扩增的同时可能已发生功能分化;(3)基因结构分析显示,植物COI家族基因结构表现多样性,主要体现在内含子的数目和长度上;(4)基因表达数据提示,COI基因家族成员参与植物生长发育的多个时期,且在不同组织器官以及不同的胁迫应答反应中发挥不同的作用。以上结果将为植物COI基因家族的深入研究提供参考。     

Extracellular release of a heterologous phytase from roots of transgenic plants: does manipulation of rhizosphere biochemistry impact microbial community structure?

To maintain the sustainability of agriculture, it is imperative that the reliance of crops on inorganic phosphorus (P) fertilizers is reduced. One approach is to improve the ability of crop plants to acquire P from organic sources. Transgenic plants that produce microbial phytases have been suggested as a possible means to achieve this goal. However, neither the impact of heterologous expression of phytase on the ecology of microorganisms in the rhizosphere nor the impact of rhizosphere microorganisms on the efficacy of phytases in the rhizosphere of transgenic plants has been tested. In this paper, we demonstrate that the presence of rhizosphere microorganisms reduced the dependence of plants on extracellular secretion of phytase from roots when grown in a P-deficient soil. Despite this, the expression of phytase in transgenic plants had little or no impact on the microbial community structure as compared with control plant lines, whereas soil treatments, such as the addition of inorganic P, had large effects. The results demonstrate that soil microorganisms are explicitly involved in the availability of P to plants and that the microbial community in the rhizosphere appears to be resistant to the impacts of single-gene changes in plants designed to alter rhizosphere biochemistry and nutrient cycling.     

Wound- and systemin-inducible calmodulin gene expression in tomato leaves

Using a calmodulin (CaM) cDNA as a probe in northern analyses, transgenic tomato plants that overexpress the prosystemin gene were found to express increased levels of CaM mRNA and protein in leaves compared to wild-type plants. These transgenic plants have been reported previously to express several wound-inducible defense-related genes in the absence of wounding. Calmodulin mRNA and protein levels were found to increase in leaves of young wild-type tomato plants after wounding, or treatment with systemin, methyl jasmonate, or linolenic acid. CaM mRNA appeared within 0.5 h after wounding or supplying young tomato plants with systemin, and peaked at 1 h. The timing of CaM gene expression is similar to the expression of the wound- or systemin-induced lipoxygenase and prosystemin genes, signal pathway genes whose expression have been reported to begin at 0.5–1 h after wounding and 1–2 h earlier than the genes coding for defensive proteinase inhibitor genes. The similarities in timing between the synthesis of CaM mRNA and the mRNAs for signal pathway components suggests that CaM gene expression may be associated with the signaling cascade that activates defensive genes in response to wounding.     

Jasmonic acid in wound signal transduction pathways

Wounding induces expression of genes encoding defense-related proteins involved in wound healing. An intensive survey has been carried out to clarify the initial signal transduction pathways that mediate this stress to expression of genes. In this context, signal molecules that intermediate in the wound signal to cellular response have been actively searched for. Jasmonic acid (JA) has been considered to be a key signal molecule in this pathway. Systemin, ABA, ethylene, and electrical current have been suggested to function by transmitting the wound signal to JA. A mitogen-activated protein kinase has been shown to respond rapidly to wounding, and proposed to function as one of the key enzymes involved in JA biosynthesis. Transgenic plants overexpressing a gene encoding a Rab-type, small GTP-binding protein contained 6-fold higher levels of cytokinins than wild-type plants, and responded to wounding by rapidly producing JA and, uncommonly, accumulating salicylic acid (SA), a pathogenic signal. These phenomena observed in the transgenic plants were reproduced when wild-type plants were wounded in the presence of the synthetic cytokinin, benzylaminopurine, suggesting that cytokinins are indispensable in the control of endogenous levels of JA and SA.     

释放后的转抗病虫基因作物对土壤生物群落的影响

土壤生物,尤其是土壤微生物多样性与活性的保持是农业生态系统健康稳定的基础,农业活动尤其是农作物植被类型的改变对土壤生物的群落结构和活性具有显著的影响。释放后的转基因作物作为生态系统的一种新的生物组分,被引入农田生态系统之间后所引发的农田生物群落（包括土壤微生物群落）的变化及其对农业生态系统的健康与稳定产生的影响,已成为研究热点,本文对转抗虫Bt基因作物、转T4-溶菌酶基因作物,转蛋白酶抑制剂I基因作物的基因产物、作物残体在土壤中的行为（如降解产物的存留形态与生物活性）及其对根际或残体周围土壤中各类生物,尤其是微生物群落结构与功能的影响进行了简要综合评述,指出基因表达产物的后效肯定是存在的且长远的,由其引发的土壤生物群落结构的变化是复杂的,因而有必要对不同类型的转基因作物释放后的生态效应做长期的跟踪研究,建议未来的研究工作应集中在以下3个方面：（1）不同的转基因表达产物在环境中的迁移、结构变化、消长动态及其对生物保持毒杀性的时间;（2）不同类型转基因的植物对土壤生物群落结构的影响趋势;（3）在实验条件下,研究分离纯化的各种转基因表达产物对土壤各生物功能类群的影响。     

Plants respond to pathogen infection by enhancing the antifungal gene expression of root-associated bacteria

Plant health and fitness widely depend on interactions with soil microorganisms. Some bacteria such as pseudomonads can inhibit pathogens by producing antibiotics, and controlling these bacteria could help improve plant fitness. In the present study, we tested whether plants induce changes in the antifungal activity of root-associated bacteria as a response to root pathogens. We grew barley plants in a split-root system with one side of the root system challenged by the pathogen Pythium ultimum and the other side inoculated with the biocontrol strain Pseudomonas fluorescens CHA0. We used reporter genes to follow the expression of ribosomal RNA indicative of the metabolic state and of the gene phlA, required for production of 2,4-diacetylphloroglucinol, a key component of antifungal activity. Infection increased the expression of the antifungal gene phlA. No contact with the pathogen was required, indicating that barley influenced gene expression by the bacteria in a systemic way. This effect relied on increased exudation of diffusible molecules increasing phlA expression, suggesting that communication with rhizosphere bacteria is part of the pathogen response of plants. Tripartite interactions among plants, pathogens, and bacteria appear as a novel determinant of plant response to root pathogens.     

Control of plant development: Signals from without—Signals from within

The powerful technology for transferring functional foreign genes into plants can only express its potential to the extent that our knowledge about signals and signal transmission in plants improves. In higher plants gene expression is regulated by ‘signals from within’ and ‘signals from without’ (e.g., light). Since light-mediated changes provide the basis for much of plant development, photocontrol of gene expression will mainly be considered. The recently discovered ‘plastidic factor’ will serve as the prototype of an intracellular ‘signal from within’. Particular emphasis will be laid on rapid interorgan signal transmission since these novel observations suggest a revision of the presently held concepts about the means of communication within a plant. It will be concluded in the end that the prevailing views about the nature of plants underestimate the degree of sophistication actually exhibited by higher plants.     

A large family of class III plant peroxidases

Class III plant peroxidase (POX), a plant-specific oxidoreductase, is one of the many types of peroxidases that are widely distributed in animals, plants and microorganisms. POXs exist as isoenzymes in individual plant species, and each isoenzyme has variable amino acid sequences and shows diverse expression profiles, suggesting their involvement in various physiological processes. Indeed, studies have provided evidence that POXs participate in lignification, suberization, auxin catabolism, wound healing and defense against pathogen infection. Little, however, is known about the signal transduction for inducing expression of the pox genes. Recent studies have provided information on the regulatory mechanisms of wound- and pathogen-induced expression of some pox genes. These studies suggest that pox genes are induced via different signal transduction pathways from those of other known defense-related genes.     

绿色荧光蛋白基因作为报告基因在水稻基因转化中的应用研究

本研究中 ,构建了含有编码绿色荧光蛋白的改进型基因质粒pJPM5。用基因枪法分别把pJPM5和另一带有绿色荧光蛋白基因的质粒pSBG70 0转入水稻TNG6 7愈伤组织。用South ern杂交法证实了转基因的存在 ,而且表明多数转基因植株含有 1到 8个拷贝的转基因。取 2个月的转基因植株上的叶片用于分析绿色荧光蛋白基因表达。用SLM - 80 0 0荧光分析仪定量测定绿色荧光蛋白。多数转基因植株具有很高的绿色荧光蛋白信号。虽然水稻植株有少量自发荧光 ,但是绿色荧光蛋白基因表达出的绿色荧光蛋白信号比植株的自发荧光强得多 ,其测定不会受自发荧光的太大影响。在荧光显微镜下观察到了绿色荧光蛋白基因的表达。借助观察分析绿色荧光蛋白基因的瞬时表达 ,本研究还发现基因枪法转化中 ,如果两枪的气压为90 0psi& 135 0psi,比两枪的气压都为 90 0psi或者 135 0psi更好 ,因其能使质粒进入更多的细胞。研究结果表明 ,绿色荧光蛋白基因可以作为水稻 (甚至小麦、玉米 )转基因研究中的报告基因。研究还显示 ,MAR序列能明显增强绿色荧光蛋白基因的表达能力 (这一结果在另文讨论 ) .     

植物耐盐相关基因克隆的研究进展

随着植物分子生物学快速发展,植物耐盐性研究已深入到耐盐相关基因的克隆、基因的结构分析以及基因表达特性等领域.目前,耐盐相关基因的克隆工作进行的如火如荼,有很多植物的耐盐基因已经被克隆,这些已克隆的耐盐相关基因涉及盐胁迫信号传导、基因表达的调控因子、渗透调节物质、胚胎发育晚期丰富蛋白LEA(Late-embryogensiS-abundant)等,本文就盐胁迫涉及的信号传导基因、基因表达调控因子等的克隆研究进展作一简要概述.     

'happy on norflurazon' (hon) mutations implicate perturbance of plastid homeostasis with activating stress acclimatization and changing nuclear gene expression in norflurazon-treated seedlings

Various mutant screens have been undertaken to identify constituents involved in the transmission of signals from the plastid to the nucleus. Many of these screens have been performed using carotenoid-deficient plants grown in the presence of norflurazon (NF), an inhibitor of phytoene desaturase. NF-treated plants are bleached and suppress the expression of nuclear genes encoding chloroplast proteins. Several genomes uncoupled (gun) mutants have been isolated that de-repress the expression of these nuclear genes. In the present study, a genetic screen has been established that circumvents severe photo-oxidative stress in NF-treated plants. Under these modified screening conditions, happy on norflurazon (hon) mutants have been identified that, like gun mutants, de-repress expression of the Lhcb gene, encoding a light-harvesting chlorophyll protein, but, in contrast to wild-type and gun mutants, are green in the presence of NF. hon mutations disturb plastid protein homeostasis, thereby activating plastid signaling and inducing stress acclimatization. Rather than defining constituents of a retrograde signaling pathway specifically associated with the NF-induced suppression of nuclear gene expression, as proposed for gun, hon mutations affect Lhcb expression more indirectly prior to initiation of plastid signaling in NF-treated seedlings. They pre-condition seedlings by inducing stress acclimatization, thereby attenuating the impact of a subsequent NF treatment.     

A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth

Abscisic acid (ABA) is a phytohormone that positively regulates seed dormancy and stress tolerance. PYL/RCARs were identified an intracellular ABA receptors regulating ABA-dependent gene expression in Arabidopsis thaliana. However, their function in monocot species has not been characterized yet. Herein, it is demonstrated that PYL/RCAR orthologues in Oryza sativa function as a positive regulator of the ABA signal transduction pathway. Transgenic rice plants expressing OsPYL/RCAR5, a PYL/RCAR orthologue of rice, were found to be hypersensitive to ABA during seed germination and early seedling growth. A rice ABA signalling unit composed of OsPYL/RCAR5, OsPP2C30, SAPK2, and OREB1 for ABA-dependent gene regulation was further identified, via interaction assays and a transient gene expression assay. Thus, a core signalling unit for ABA-responsive gene expression modulating seed germination and early seedling growth in rice has been unravelled. This study provides substantial contributions toward understanding the ABA signal transduction pathway in rice.     

Molecular methods for environmental monitoring and containment of genetically engineered microorganisms

Plans to introduce genetically engineered microorganisms into the environment has led to concerns over safety and has raised questions about how to detect and to contain such microorganisms. Specific gene sequences, such as lacZ, have been inserted into genetically engineered microorganisms to permit their phenotypic detection. Molecular methods have been developed based upon recovery of DNA from environmental samples and gene probe hybridization to specific diagnostic gene sequences for the specific detection of genetically engineered microorganisms. DNA amplification using the polymerase chain reaction has been applied to enhance detection sensitivity so that single gene targets can be detected. Detection of messenger RNA has permitted the monitoring of gene expression in the environment. The use of reporter genes, such as the lux gene for bioluminescence, likewise has permitted the observation of gene expression. Conditional lethal constructs have been developed as models for containment of genetically engineered microorganisms. Suicide vectors, based upon the hok gene have been developed as model containment systems.     

废水处理中群体感应调控行为研究进展

群体感应是微生物在繁殖过程中分泌一些特定的信号分子,当信号分子浓度达到一定阈值后,可以调控某些基因表达,从而实现信息交流的现象.群体感应调控着生物膜形成、公共物质合成、基因水平转移等一系列社会性行为,广泛存在于各类微生物信息交流中.活性污泥、生物膜和颗粒污泥等生物聚集体广泛存在群体感应现象,了解和认识群体感应与微生物之间的调控行为,对于废水处理具有重要意义.本文综述了感应信号分子的分类、群体感应调控机制,群体感应在活性污泥、生物膜、好氧颗粒污泥和厌氧颗粒污泥等废水处理中的调控行为的研究进展,并对废水处理中群体感应的研究进行了展望,以期为深入理解废水处理中群体感应调控行为提供参考.     

非豆科植物共生受体样蛋白激酶研究进展

植物根部能够与微生物形成相互依存、互惠互利的共生关系,非豆科植物根系主要与内生真菌形成菌根的共生体。共生受体样蛋白激酶(symbiosis receptor-like kinase,SYMRK)是植物识别菌根真菌诱导而产生的特异分子,它的蛋白结构由三个部分组成,即包含3个富含亮氨酸重复序列(LRRs)的胞外受体结合域、跨膜区和胞内蛋白激酶域。Symrk是控制共生形成的一个关键组分,该基因所编码的蛋白在植物识别和应答菌根真菌早期信号转导途径中是必需的。对Symrk基因的研究为进一步弄清植物-真菌共生的功能和作用机理打下了坚实的基础。     

F-box蛋白质在植物生长发育中的功能

在真核生物中, 泛素介导的蛋白降解途径参与了许多生物学过程。SCF复合体是一种非常重要的E3泛素连接酶, 在植物中研究的最为深入。F-box蛋白包含一个F-box 基序, 是SCF复合体的一个亚基, 它决定了底物识别的特异性。目前, 从各种植物中已鉴定出大量的F-box蛋白质, 它们参与了植物激素(乙烯, 生长素, GA, JA)的信号传导以及自交不亲和、花器官发育等生物学过程, F-box蛋白还参与了植物的胁迫反应。最新研究结果显示, 一个F-box蛋白TIR1是生长素的受体。因此, F-box蛋白质介导的泛素化蛋白质降解途径可能是植物基因表达调控的重要机制。