Growth of Quailbush in Acidic, Metalliferous Desert Mine Tailings: Effect of Azospirillum brasilense Sp6 on Biomass Production and Rhizosphere Community Structure

Mine tailing deposits in semiarid and arid environments frequently remain devoid of vegetation due to the toxicity of the substrate and the absence of a diverse soil microbial community capable of supporting seed germination and plant growth. The contribution of the plant growth promoting bacterium (PGPB) Azospirillum brasilense Sp6 to the growth of quailbush in compost-amended, moderately acidic, high-metal content mine tailings using an irrigation-based reclamation strategy was examined along with its influence on the rhizosphere bacterial community. Sp6 inoculation resulted in a significant (2.2-fold) increase in plant biomass production. The data suggest that the inoculum successfully colonized the root surface and persisted throughout the 60-day experiment in both the rhizosphere, as demonstrated by excision and sequencing of the appropriate denaturing gradient gel electrophoresis (DGGE) band, and the rhizoplane, as indicated by fluorescent in situ hybridization of root surfaces. Changes in rhizosphere community structure in response to Sp6 inoculation were evaluated after 15, 30, and 60 days using DGGE analysis of 16S rRNA polymerase chain reaction amplicons. A comparison of DGGE profiles using canonical correspondence analysis revealed a significant treatment effect (Sp6-inoculated vs. uninoculated plants vs. unplanted) on bacterial community structure at 15, 30, and 60 days (p?<?0.05). These data indicate that in an extremely stressed environment such as acid mine tailings, an inoculated plant growth promoting bacterium not only can persist and stimulate plant growth but also can directly or indirectly influence rhizobacterial community development.     

Control of Late Blight (Phytophthora capsici ) in Pepper Plant with a Compost Containing Multitude of Chitinase-producing Bacteria

Compost sustaining a multitude of chitinase-producing bacteria was evaluated in a greenhouse study as a soil amendment for the control of late blight (Phytophthora capsici L.) in pepper (Capsicum annuum L.). Microbial population and exogenous enzyme activity were measured in the rhizosphere and correlated to the growth and health of pepper plant. Rice straw was composted with and without a chitin source, after having been inoculated with an aliquot of coastal area soil containing a known titer of chitinase-producing bacteria. P. capsici inoculated plants cultivated in chitin compost-amended soil exhibited significantly higher root and shoot weights and lower root mortality than plants grown in pathogen-inoculated control compost. Chitinase and β-1,3-glucanase activities in rhizosphere of plants grown in chitin compost-amended soil were twice that seen in soil amended with control compost. Colony forming units of chitinase-producing bacteria isolated from rhizosphere of plants grown in chitin compost-amended soil were 10³ times as prevalent as bacteria in control compost. These results indicate that increasing the population of chitinase-producing bacteria and soil enzyme activities in rhizosphere by compost amendment could alleviate pathogenic effects of P. capsici.     

Arbuscular Mycorrhizal Fungi (AMF) and Biosolids Enhance the Growth of a Native Australian Grass on Sulphidic Gold Mine Tailings

We tested the effect of the addition of biosolids combined with a native mycorrhizal inoculum (Arbuscular Mycorrhizal Fungi [AMF]) on growth of a native Australian grass, and on trace element stabilization of sulphidic gold mine tailings. A glasshouse trial was established on four substrates: tailings (T); tailings with a layer of 5 cm topsoil (TS); tailings amended with 100 dry t ha^?1 biosolids (LB), and tailings amended with 500 dry t ha^?1 biosolids (HB). Pots of 1.2 L of capacity were established; some were inoculated with a mixture of Glomus sp. (WUM51–9227), Scutelospora aurigloba (WUM51–53), and Acaulospora levis (WUM46) culture mix, and others were uninoculated controls. Seeds of the native Australian grass, Bothriochloa macra were sown in the pots. Root infection, plant biomass production, nutrients and trace element concentrations in shoots were investigated. Addition of biosolids significantly increased AMF infection of roots compared to unamended substrates. No clear qualitative differences in colonization were detected. Addition of biosolids and AMF together clearly improved the establishment and growth of the native grass. Similar trends in nutritional status were shown for biosolids and inoculation with AMF treatments. Mycorrhizal inoculation increased plant biomass production and the effectiveness of nutrient uptake. The combined use of biosolids and mycorrhizal inoculation could be a reliable method for phytostabilization purposes in polluted substrates.     

Integrative Application of Soil Conditioners and Bio-augmentation for Enhanced Heavy Metal Stabilization from Wastewater and Improved Growth of Nicotiana alata L. and Petunia hydrida L.

Wastewater generated from industries contains numerous contaminants, among which heavy metals (HMs) are non-degradable. This research work highlights the use of commonly used ornamental plants, Nicotiana alata L. and Petunia hydrida L., with compost (C) and peat moss (M), and rhizospheric bacterial augmentation using Pseudomonas japonica, for the phytostabilization of HMs from synthetic wastewater. After plant–soil acclimatization, plants were exposed for 6 weeks to synthetic wastewater, containing cadmium, chromium, copper, lead, nickel, and zinc concentrations (based on the HMs level of wastewaters collected from textile and pharmaceutical industry). Physiological response, biochemical status, and enzymatic fluctuations of plants and the distribution of HMs in plant parts and soil, were quantified. With the combined use (5% each v/v conditioner/soil) of C and M, in bio-augmented soil, physiological response and enzymatic status of both plants improved, with decreased stress injury due to HMs. Further, the plant HMs uptake was reduced, with better stabilization of HM in soil. For better phytostabilization of HMs in wastewater, the use of compost, peat moss, and bacterial augmentation is recommended with Nicotiana alata L. and Petunia hydrida L.

     

Combined use of Alkane-Degrading and Plant Growth-Promoting Bacteria Enhanced Phytoremediation of Diesel Contaminated soil

Inoculation of plants with pollutant-degrading and plant growth-promoting microorganisms is a simple strategy to enhance phytoremediation activity. The objective of this study was to determine the effect of inoculation of different bacterial strains, possessing alkane-degradation and 1-amino-cyclopropane-1-carboxylic acid (ACC) deaminase activity, on plant growth and phytoremediation activity. Carpet grass (Axonopus affinis) was planted in soil spiked with diesel (1% w/w) for 90 days and inoculated with different bacterial strains, Pseudomonas sp. ITRH25, Pantoea sp. BTRH79 and Burkholderia sp. PsJN, individually and in combination. Generally, bacterial application increased total numbers of culturable hydrocarbon-degrading bacteria in the rhizosphere of carpet grass, plant biomass production, hydrocarbon degradation and reduced genotoxicity. Bacterial strains possessing different beneficial traits affect plant growth and phytoremediation activity in different ways. Maximum bacterial population, plant biomass production and hydrocarbon degradation were achieved when carpet grass was inoculated with a consortium of three strains. Enhanced plant biomass production and hydrocarbon degradation were associated with increased numbers of culturable hydrocarbon-degrading bacteria in the rhizosphere of carpet grass. The present study revealed that the combined use of different bacterial strains, exhibiting different beneficial traits, is a highly effective strategy to improve plant growth and phytoremediation activity.     

Effect of Medicago sativa L. and compost on organic and inorganic pollutant removal from a mixed contaminated soil and risk assessment using ecotoxicological tests

Several Gentle Remediation Options (GRO), e.g., plant-based options (phytoremediation), singly and combined with soil amendments, can be simultaneously efficient for degrading organic pollutants and either stabilizing or extracting trace elements (TEs). Here, a 5-month greenhouse trial was performed to test the efficiency of Medicago sativa L., singly and combined with a compost addition (30% w/w), to treat soils contaminated by petroleum hydrocarbons (PHC), Co and Pb collected at an auto scrap yard. After 5 months, total soil Pb significantly decreased in the compost-amended soil planted with M. sativa, but not total soil Co. Compost incorporation into the soil promoted PHC degradation, M. sativa growth and survival, and shoot Pb concentrations [3.8 mg kg^?1 dry weight (DW)]. Residual risk assessment after the phytoremediation trial showed a positive effect of compost amendment on plant growth and earthworm development. The O₂ uptake by soil microorganisms was lower in the compost-amended soil, suggesting a decrease in microbial activity. This study underlined the benefits of the phytoremediation option based on M. sativa cultivation and compost amendment for remediating PHC- and Pb-contaminated soils.     

Vegetation Response to Lime and Manure Compost Amendments on Acid Lead/Zinc Mine Tailings: A Greenhouse Study

Land disturbed by mining in China is a serious problem and lead/zinc (Pb/Zn) mine tailings constitute the majority of the metal mine tailings produced in Guangdaong Province, China. A greenhouse study was therefore conducted to evaluate the effects of lime (40, 80, 120, and 160 t/ha) and manure compost (50 and 100 t/ha) amendment on the revegetation of the Pb/Zn mine tailings using Cynodon dactylon (Bermuda grass) and Agropyron elongatum (tall wheatgrass). The results showed that a combination of lime and manure compost amendment together with deionized water leachating was able to increase pH, reduce electrical conductivity and diethylenetraminepentaacetic acid (DTPA)‐extractable concentrations of Zn and Pb in tailings. Using 80 t/ha lime amendment with the supplement of fertilizer or manure compost was able to effectively improve germination of both C. dactylon and A. elongatum. The highest dry weight yields were obtained in tailings receiving 80 t lime/ha and 100 t manure compost/ha for both plant species. Plant tissue analysis showed that lime amendment at 120–160 t/ha reduced Zn accumulation in both shoot and root of C. dactylon. However, this trend was not observed for Pb.     

Evaluation of sewage sludge, septic waste and sludge compost applications to corn and forage: yields and N, P and K content of crops and soils

This paper presents the data from two years of experiments concerned with the application of aerobically-digested sewage sludge, anaerobic lagoon septic sludge, sewage sludge compost or fertilizer to soils for grass forage and feed corn (Zea mays L.) production at two different sites 45 km from Truro, Nova Scotia. Crop yields, plant tissue and Mehlich-1 extractable soil nutrients were evaluated; 15 elements were analyzed in the plant tissue and nine elements in the soil extracts. This paper describes the results of crop yields, plant N, P and K content and Mehlich-1 extractable P and K. The research demonstrated the fertilizer produced higher yields of grass forage than the sludge and the compost but equivalent to the sludge in corn yields. Forage and corn N, P and K contents, however, varied with treatment, crop and year, while the compost-amended soils were highest in extractable nutrients. Both sludges and the compost, therefore, could be effective sources of N, P and K for crop production. Compared to the conventional fertilizer, the nutrient availability from the organic amendments (especially N and P) was considerably lower than the 50% assumed at the start of the experiment; the sludges however, provided higher nutrient availability than the compost.     

Rhizosphere microbial community and its response to plant species and soil history

The plant rhizosphere is a dynamic environment in which many parameters may influence the population structure, diversity and activity of the microbial community. Two important factors determining the structure of microbial community present in the vicinity of plant roots are plant species and soil type. In the present study we assessed the structure of microbial communities in response to four plant species (i.e. maize (Zea mays L.), oat (Avena sativa L.), barley (Hordeum vulgare L.) and commercial grass mix) planted in soil with different land use history (i.e. arable land under crop rotation, maize monoculture and permanent grassland). Both factors, plant species and land use history, showed clear effects on microbial community and diversity as determined by PCR-DGGE fingerprinting with universal and group-specific bacterial primers. Moreover, we explored the rhizosphere effect of these plant species on the abundance of bacterial antagonists of the potato pathogen Rhizoctonia solani AG3. The data showed that the abundance and taxonomic composition of antagonists differed clearly between the different plants. The highest percentages of antagonists were found in maize and grass rhizosphere. When antagonistic Pseudomonas populations were compared, the highest, abundance and diversity of antagonists were detected in barley and oat rhizospheres, as compared to maize and grass rhizosphere. The results obtained in our study demonstrate clearly that plant species and soil type are two important factors affecting the structure of total bacterial, Pseudomonas and Bacillus community.     

Impact of Compost on Metals Phytostabilization Potential of Two Halophytes Species

Phytostabilization of heavy metals in contaminated soils should be subject to two conditions, the first is the choice plant must be able to stabilize heavy metals in soil, the second is the plant material which produced from the phytostabilization process must be safe and useful to avoid overload on environmental system. A field experiment was conducted out to evaluate the phytostabilization potential of two halophytes species (Atriplex lentiformis and Atriplex undulata). Compost at rates of 0, 15 and 30 ton ha^?1 was used to examine its role in plant growth and heavy metals uptake. The high rate of compost (30 ton ha^?1) decreased zinc (Zn) concentrations in the leaves of A. lentiformis and A. undulata by 15.8 and 13.0%, while lead (Pb) in the leaves decreased by 37.6 and 35.2% respectively. Despite the extremely high total heavy metals concentrations in the studied soil, plants of Atriplex were able to grow and maintain shoots metals content below the toxic level and the produced plant materials had a high nutritive value compared to the conventional forage crops. Phosphorus (P) and chloride (Cl) in the roots of Atriplex plants play important function in heavy metals phytostabilization mechanism by the two halophytes plants.     

Phytostabilization of polymetallic contaminated soil using Medicago sativa L. in combination with powdered marble: Sustainable rehabilitation

This study uses an ecotoxicology approach to evaluate the effectiveness of combining powdered marble as an amendment, with phytostabilization by Medicago sativa L. on the neutralization of acidic mine tailings, and the stabilization of heavy metals. The mine tailings were collected from an abandoned polymetallic mine in Southern Morocco, and mixed with powdered marble as the following proportions, 25%, 50%, and 75%. Laboratory immobilization/stabilization tests showed that the application of powdered marble in the treatments led to a significant increase in pH, and significant reductions of Cu, Zn (99%), Pb (98%), and Fe (45%). Greenhouse experiments showed that plant growth in all treatments was significantly (p ≤ 0.05) less than growth in agricultural soil. Plant growth significantly (p ≤ 0.05) decreased as the proportion of powdered marble increased. The concentration of metals in plant roots were significantly (p ≤ 0.05) higher than those of shoots. Combining immobilization by powdered marble with phytostabilization by M. sativa L. could represent a viable method of rehabilitating acidic polymetallic mine tailings.     

Phytoremediation of mine tailings in temperate and arid environments

Phytoremediation is an emerging technology for the remediation of mine tailings, a global problem for which conventional remediation technologies are costly. There are two approaches to phytoremediation of mine tailings, phytoextraction and phytostabilization. Phytoextraction involves translocation of heavy metals from mine tailings to the plant shoot biomass followed by plant harvest, while phytostabilization focuses on establishing a vegetative cap that does not shoot accumulate metals but rather immobilizes metals within the tailings. Phytoextraction is currently limited by low rates of metal removal which is a combination of low biomass production and insufficiently high metal uptake into plant tissue. Phytostabilization is currently limited by a lack of knowledge of the minimum amendments required (e.g., compost, irrigation) to support long-term plant establishment. This review addresses both strategies within the context of two specific climate types: temperate and arid. In temperate environments, mine tailings are a source of metal leachates and acid mine drainage that contaminate nearby waterways. Mine tailings in arid regions are subject to eolian dispersion and water erosion. Examples of phytoremediation within each of these environments are discussed. Current research suggests that phytoextraction, due to high implementation costs and long time frames, will be limited to sites that have high land values and for which metal removal is required. Phytostabilization, due to lower costs and easier implementation, will be a more commonly used approach. Complete restoration of mining sites is an unlikely outcome for either approach.     

The influences of arbuscular mycorrhizal fungus on phytostabilization of lead/zinc tailings using four plant species

A greenhouse experiment was conducted to investigate the effects of the arbuscular mycorrhizal fungus Funneliformis mosseae on three parameters: Pb, Zn, Cu and Cd accumulation, translocation and plant growth in perennial ryegrass (Lolium perenne), tall fescue (Festuca arundinacea), showy stonecrop (Hylotelephium spectabile) and Purple Heart (Tradescantia pallida). The purpose of this work is to enhance site-specific phytostabilization of lead/zinc mine tailings using native plant species. The results showed that mycorrhizal fungi inoculation significantly increased plant biomass of F. arundinacea, H. spectabile and T. pallida. The Pb, Zn, Cu and Cd concentrations in roots were higher than those in shoots both with and without mycorrhizae, with the exception of the Zn concentration in H. spectabile. Mycorrhizae generally increased metal concentrations in roots and decreased metal concentrations in shoots of L. perenne and F. arundinacea. In addition, it was found that the majority of the bioconcentration and translocation factors were lower than 1 and mycorrhizal fungi inoculation further reduced these values. These results suggest that appropriate plant species inoculated with mycorrhiza might be a potential approach to revegetating mine tailing sites and that H. spectabile is an appropriate plant for phytostabilization of Pb/Zn tailings in northern China due to its higher biomass production and lower metal accumulation in shoots.     

Microcosm enrichment of 1,3-dichloropropene-degrading soil microbial communities in a compost-amended soil

AIMS: A microcosm-enrichment approach was used to investigate bacterial populations that may represent 1,3-dichloropropene (1,3-D)-degrading micro-organisms in compost-amended soil. METHODS AND RESULTS: After 8 weeks of incubation, with repeated application of 1,3-D, volatilization fluxes were much lower for compost-amended soil (CM) than with the unamended soils, indicating accelerated degradation due to addition of compost, or development of new microbial populations with enhanced degradation capacity. Denaturing gradient gel electrophoresis (DGGE) profiles of the PCR-amplified region of 16S rDNA genes were used to identify dominant bacterial populations in the fumigant-degrading soil. The DGGE results indicated that specific bacterial types had been enriched, and a more diverse fingerprint was observed in the community derived from the compost-amended soil compared with the unamended soil. Fragments from 16 different DGGE bands were cloned, sequenced and compared with published 16S rDNA sequences. Two clones, designated E1 and E4, were unique to all soils to which compost was added, and corresponded to strains of Pseudomonas and Actinomadura, respectively. CONCLUSIONS: The results show that the addition of compost to soil increases specific microbial populations and results in the accelerated degradation of fumigants. SIGNIFICANCE AND IMPACT OF THE STUDY: Application of compost manure to soil can help degrade soil fumigants at a faster rate.     

Revegetation of Pb/Zn Mine Tailings, Guangdong Province, China

The Lechang lead/zinc mine is located in the north part of Guangdong Province, southern China. The tailings residue from the extraction of lead/zinc ores was permanently stored in tailings ponds, which required revegetation to reduce the environmental impact. A field study was, therefore, conducted to evaluate the effects of different ameliorants, including: (1) pig manure (PM); (2) mushroom compost (MC); (3) burnt coal residue (BC); (4) fly ash (FA); and (5) surface soil on the growth of Agropyron elongatum (tall wheat grass), Cynodon dactylon (Bermuda grass), Lolium multiflorum (Italian ryegrass), and Trifolium repens (clover) in the tailings residue. The results from the core profiles indicated that adding FA (10 cm) or BC (15 cm) as a barrier layer between the cover soil and the tailings could increase pH, compared to the treatment with soil only. C. dactylon grew well and had a high cover (90–100%) in all the treatment plots except the control plots without any amendment. A. elongatum and L. multiflorum had a higher cover when grown in plots covered with a barrier layer using FA or BC (both with surface soil), than those grown in plots covered with surface soil only. Treatment plots receiving a thicker soil cover (30 cm) had a better dry weight yield than those with a thinner soil cover (15 cm), regardless of the barrier layer. The results from this study indicate that the use of either 15 cm BC or 10 cm FA as a barrier layer with surface soil, or the use of 38 tonnes PM/ha and 6 cm MC, were effective for the revegetation of Pb/Zn mine tailings. C. dactylon was the best species among the four species used for revegetation. Key words: reclamation, Pb/Zn mine tailings, burnt coal, mushroom compost, fly ash, Bermuda grass, Italian ryegrass, clover.     

Effects of Compost on Colonization of Roots of Plants Grown in Metalliferous Mine Tailings, as Examined by Fluorescence In Situ Hybridization

The relationship between compost amendment, plant biomass produced, and bacterial root colonization as measured by fluorescence in situ hybridization was examined following plant growth in mine tailings. Mine tailings can remain devoid of vegetation for decades after deposition due to a combination of factors that include heavy metal toxicity, low pH, poor substrate structure and water-holding capacity, and a severely impacted heterotrophic microbial community. Research has shown that plant establishment, a desired remedial objective to reduce eolian and water erosion of such tailings, is enhanced by organic matter amendment and is correlated with significant increases in rhizosphere populations of neutrophilic heterotrophic bacteria. Results show that for the acidic metalliferous tailings tested in this study, compost amendment was associated with significantly increased bacterial colonization of roots and increased production of plant biomass. In contrast, for a Vinton control soil, increased compost had no effect on root colonization and resulted only in increased plant biomass at high levels of compost amendment. These data suggest that the positive association between compost amendment and root colonization is important in the stressed mine tailings environment where root colonization may enhance both microbial and plant survival and growth.     

Mycorrhizo-remediation of lead/zinc mine tailings using vetiver: a field study

A field study of Pb/Zn mine tailings was conducted to assess the influence of AM fungi and refuse compost on phytoremediation using vetiver grass slips. Our investigation revealed that vetiver could thrive on Pb/Zn mine tailings. The addition of refuse compost resulted in biomass that was more than 3-times higher when compared with the control, and were mainly attributed to an improvement of soil properties, as well as better nutrient supply than untreated control. AMF inoculation also significantly increased the dry matter of vetiver by a rate of 8.1-13.8%. It was observed that concentrations of N and P in the shoots were significantly higher in mycorrhizal treatments than those without AMF inoculation. However, AMF inoculation significantly decreased the metal concentrations in root, but not in shoot. Based on the results, it seems clear that AMF can play an essential role in the phytostabilization of metal contaminated soils.     

Novel strains of Bacillus,isolated from compost and compost-amended soils,as biological control agents against soil-borne phytopathogenic fungi

A stepwise screening strategy made it possible to identify five new Bacillus spp. strains for biocontrol of Rhizoctonia solani, Sclerotinia minor and Fusarium solani. In vitro and in vivo biocontrol activity and M13-PCR DNA-fingerprinting led to the selection of these valuable biological control agents (BCAs) from a wide collection of over 250 candidates. At the end of this selection, the highest potential antagonists were identified at species level by 16S-rRNA gene sequence analysis, and results assigned them to Bacillus subtilis group as Bacillus amyloliquefaciens- and Bacillus methylotrophicus-related strains. In the current study, spore-forming bacteria provided substantial biocontrol of telluric diseases on cress and other different host plants. The strains named 15S and 09C were effective in disease control on Brassica oleracea/R. solani pathosystem, whereas Sclerotinia drop of lettuce was reduced by treatments with the strains 17S and 08C. Finally, the strains 17S and 12S were equally effective to control potato Fusarium rot. The evident zone of inhibition seen in dual culture plates suggested antibiosis-like antagonisms as the main mechanisms used by these bacterial isolates in interaction with the pathogens. Additionally, the API-ZYM method revealed constitutive activity of certain extracellular enzymes that could be involved in plant fortification. Bacillus strains isolated from compost and compost-amended soils are promising BCAs that have potential for practical application as biofungicides.     

Efficacy of lime, biosolids, and mycorrhiza for the phytostabilization of sulfidic copper tailings in Chile: a greenhouse experiment

Inadequate abandonment of copper mine tailings under semiarid Mediterranean climate type conditions has posed important environmental risks in Chile due to wind and rain erosion. There are cost-effective technologies for tailings stabilization such as phytostabilization. However, this technology has not been used in Chile yet. This study evaluated in a greenhouse assay the efficacy of biosolids, lime, and a commercial mycorrhiza to improve adverse conditions of oxidized Cu mine tailings for adequate establishment and grow of Lolium perenne L. var nui. Chemical characterization of experimental substrates and pore water samples were performed; plant density, biomass production, chlorophyll content, and metal content in shoots was evaluated in rye grass plants after an eight-week growth period. Results showed that neutralization of tailings and superficial application of biosolids increased both aerial biomass production and chlorophyll content of rye grass. Increased Cu solubilization and translocation to shoots occurred after biosolids application (mixed), particularly on unlimed tailings, due to formation of soluble organometallic complexes with dissolved organic carbon (DOC) which can be readily absorbed by plant roots. Positive effects of mycorrhizal inoculation on rye grass growth were restricted to treatments with superficial application of biosolids, probably due to Cu toxicity effects on commercial mycorrhiza used (Glomulus intraradices).     

Soil-covered strategy for ecological restoration alters the bacterial community structure and predictive energy metabolic functions in mine tailings profiles

Native soil amendment has been widely used to stabilize mine tailings and speed up the development of soil biogeochemical functions before revegetation; however, it remains poorly understood about the response of microbial communities to ecological restoration of mine tailings with soil-covered strategy. In this study, microbial communities along a 60-cm profile were investigated in mine tailings during ecological restoration of two revegetation strategies (directly revegetation and native soil covered) with different plant species. The mine tailings were covered by native soils as thick as 40 cm for more than 10 years, and the total nitrogen, total organic carbon, water content, and heavy metal (Fe, Cu, and Zn) contents in the 0–40 cm intervals of profiles were changed. In addition, increased microbial diversity and changed microbial community structure were also found in the 10–40 cm intervals of profiles in soil-covered area. Soil-covered strategy rather than plant species and soil depth was the main factor influencing the bacterial community, which explained the largest portion (29.96%) of the observed variation. Compared directly to revegetation, soil-covered strategy exhibited the higher relative abundance of Acidobacteria and Deltaproteobacteria and the lower relative abundance of Bacteroidetes, Gemmatimonadetes, Betaproteobacteria, and Gammaproteobacteria. PICRUSt analysis further demonstrated that soil-covered caused energy metabolic functional changes in carbon, nitrogen, and sulfur metabolism. Given all these, the soil-covered strategy may be used to fast-track the establishment of native microbial communities and is conducive to the rehabilitation of biogeochemical processes for establishing native plant species.