Aluminum Nanohole Arrays Fabricated on Polycarbonate for Compact Disc-Based Label-Free Optical Biosensing

Al nanohole array plasmonic biosensors have been fabricated on polycarbonate (PC) substrates from conventional compact discs (CD). Standard micro and nanofabrication processes have been used and optimized to be PC compatible. The viability of this CD-based plasmonic platform for label-free optical biosensing has been demonstrated through a competitive bioassay for biotin analysis using biotin-functionalized dextran-lipase conjugates immobilized on the transducer surface.     

Extraordinary Optical Transmission Property of X-Shaped Plasmonic Nanohole Arrays

Optical transmission properties of periodic X-shaped plasmonic nanohole arrays in a silver film are investigated by performing the finite element method. Obvious peaks appear in the transmission spectra due to surface plasmon polaritons (SPPs) on the top surface of the silver film, to the Fabry–Ferot resonance effect of SPPs in the nanohole, and to the localized surface plasmon resonance of the nanohole. Besides the topologic shape parameters of the X-shaped nanohole, transmission properties strongly depend on incident polarization. The results of this study not only present a tunable plasmonic filter, but also aid in the understanding of the mechanisms of the extraordinary optical transmission phenomenon.     

Optical Response of Plasmonic Nanohole Arrays: Comparison of Square and Hexagonal Lattices

Nanohole arrays in metal films allow extraordinary optical transmission (EOT); the phenomenon is highly advantageous for biosensing applications. In this article, we theoretically investigate the performance of refractive index sensors, utilizing square and hexagonal arrays of nanoholes, that can monitor the spectral position of EOT signals. We present near- and far-field characteristics of the aperture arrays and investigate the influence of geometrical device parameters in detail. We numerically compare the refractive index sensitivities of the two lattice geometries and show that the hexagonal array supports larger figure-of-merit values due to its sharper EOT response. Furthermore, the presence of a thin dielectric film that covers the gold surface and mimics a biomolecular layer causes larger spectral shifts within the EOT resonance for the hexagonal array. We also investigate the dependence of the transmission responses on hole radius and demonstrate that hexagonal lattice is highly promising for applications demanding strong light transmission.     

用氨基修饰的载玻片制作cDNA微阵列

cDNA微阵列已在基因差异表达、寻找新基因等研究方面获得广泛应用,但有关cDNA微阵列的制作,目前多采用多聚赖氨酸修饰的载玻片为探针固定载体,固定效果较差.用氨基硅烷处理的载玻片为载体制作cDNA微阵列,然后考察其固定效率、检测灵敏度、稳定性、实用性等指标.结果表明,用氨基硅烷处理的载玻片具有比多聚赖氨酸更令人满意的核酸固定效率、检测灵敏度,且稳定实用.因此,用氨基硅烷修饰的载玻片为探针固定载体制作cDNA微阵列较为理想.     

Optical Properties and Local Electromagnetic Field Enhancement of Periodic Rectangular Nanohole Arrays in Au-Interlayer-Au Multilayer Films

Plasmonics - The optical properties and the local electromagnetic field enhancement of a compound structure with rectangular nanohole arrays in Au-interlayer-Au multilayer films are numerically...     

Design and Analysis of Infrared Tunable All-Optical Filters Based on Plasmonic Hybrid Nanostructure Using Periodic Nanohole Arrays

A tunable high transmission optical bandpass filter based on a plasmonic hybrid nanostructure, composed of a periodic array of nanocircles and nanoholes combining two isolated waveguides is introduced in this paper. The presented design improves the coupling, which results in a higher transmission peak. To study the filtering operation, different topologies are investigated. The transmission properties and the resonance wavelengths are adjusted by sweeping various geometrical parameters. A multimode spectrum for each of the topologies is obtained. A tunable bandgap and bandwidth can be obtained by adjusting the refractive index of the periodic nanostructure. We have reached a maximum quality factor and a small full width at half-maximum bandwidth with the maximum transmission values greater than 80%. The advantages of the presented structures which include the benefits of both plasmonic and periodic nanostructures are tunability, high detection resolution, and integrability at the nanoscale for optical applications.

     

Nylon Filter Arrays Reveal Differential Expression of Expressed Sequence Tags in Wheat Roots Under Aluminum Stress

To enrich differentially expressed sequence tags (ESTs) for aluminum (A1) tolerance, cDNA subtraction libraries were generated from Al-stressed roots of two wheat (Triticum aestivum L.) nearisogenic lines (NILs) contrasting in Al-tolerance gene(s) from the Al-tolerant cultivar Atlas 66, using suppression subtractive hybridization (SSH). Expression patterns of the ESTs were investigated with nylon filter arrays containing 614 cDNA clones from the subtraction library. Gene expression profiles from macroarray analysis indicated that 25 ESTs were upregulated in the tolerant NIL in response to A1 stress. The result from Northern analysis of selected upregulated ESTs was similar to that from macroarray analysis. These highly expressed ESTs showed high homology with genes involved in signal transduction, oxidative stress alleviation, membrane structure, Mg^2 transportation, and other functions. Under A1 stress, the Al-tolerant NIL may possess altered structure or function of the cell wall, plasma membrane, and mitochondrion. The wheat response to A1 stress may involve complicated defense-related signaling and metabolic pathways. The present experiment did not detect any induced or activated genes involved in the synthesis of malate and other organic acids in wheat under Al-stress.     

Nylon Filter Arrays Reveal Differential Expression of Expressed Sequence Tags in Wheat Roots Under Aluminum Stress

To enrich differentially expressed sequence tags (ESTs) for aluminum (Al) tolerance, cDNA subtraction libraries were generated from Al-stressed roots of two wheat (Triticum aestivum L.) nearisogenic lines (NILs) contrasting in Al-tolerance gene(s) from the Al-tolerant cultivar Atlas 66, using suppression subtractive hybridization (SSH). Expression patterns of the ESTs were investigated with nylon filter arrays containing 614 cDNA clones from the subtraction library. Gene expression profiles from macroarray analysis indicated that 25 ESTs were upregulated in the tolerant NIL in response to Al stress. The result from Northern analysis of selected upregulated ESTs was similar to that from macroarray analysis. These highly expressed ESTs showed high homology with genes involved in signal transduction, oxidative stress alleviation, membrane structure, Mg2 transportation, and other functions. Under Al stress, the Al-tolerant NIL may possess altered structure or function of the cell wall, plasma membrane, and mitochondrion. The wheat response to Al stress may involve complicated defense-related signaling and metabolic pathways.The present experiment did not detect any induced or activated genes involved in the synthesis of malate and other organic acids in wheat under Al-stress.     

Integrated High‐Efficiency Pt/Carbon Nanotube Arrays for PEM Fuel Cells

A facile strategy to deposit Pt nanoparticles with various metal‐loading densities on vertically aligned carbon nanotube (ACNT) arrays as electrocatalysts for proton exchange membrane (PEM) fuel cells is described. The deposition is achieved by electrostatic adsorption of the Pt precursor on the positively charged polyelectrolyte functionalized ACNT arrays and subsequent reduction by L ‐ascorbic acid. The application of the aligned electrocatalysts in fuel cells is realized by transferring from a quartz substrate to nafion membrane using a hot‐press procedure to fabricate the membrane electrode assembly (MEA). It is shown that the MEA with vertically aligned structured electrocatalysts provides better Pt utilization than that with Pt on conventional carbon nanotubes or carbon black, resulting in higher fuel cell performance.     

Using Affordable LED Arrays for Photo-Stimulation of Neurons

Standard slice electrophysiology has allowed researchers to probe individual components of neural circuitry by recording electrical responses of single cells in response to electrical or pharmacological manipulations^1,2. With the invention of methods to optically control genetically targeted neurons (optogenetics), researchers now have an unprecedented level of control over specific groups of neurons in the standard slice preparation. In particular, photosensitive channelrhodopsin-2 (ChR2) allows researchers to activate neurons with light^3,4. By combining careful calibration of LED-based photostimulation of ChR2 with standard slice electrophysiology, we are able to probe with greater detail the role of adult-born interneurons in the olfactory bulb, the first central relay of the olfactory system. Using viral expression of ChR2-YFP specifically in adult-born neurons, we can selectively control young adult-born neurons in a milieu of older and mature neurons. Our optical control uses a simple and inexpensive LED system, and we show how this system can be calibrated to understand how much light is needed to evoke spiking activity in single neurons. Hence, brief flashes of blue light can remotely control the firing pattern of ChR2-transduced newborn cells.Download video file.^{(48M, mov)}     

Cantilever Arrays for Multiplexed Mechanical Analysis of Biomolecular Reactions

Microchips;ontaining arrays of cantilever beams have been used to mechanically detect and quantitatively analyze multiple reactions of DNA hybridization and antigen-antibody binding simultaneously. The reaction-induced deflection of a cantilever beam reflects the interplay between strain energy increase of the beam and the free energy reduction of a reaction, providing an ideal tool for investigating the connection between mechanics and chemistry of biomolecular reactions. Since free energy reduction is common for all reactions, the cantilever array forms a universal platform for label-free detection of various specific biomolecular reactions. A few such reactions and their implications in biology and biotechnology are discussed.     

Construction of Broad Host Range Cloning Vectors for Gram-negative Bacteria

A new cloning vector, pMFY31, has been constructed based on the high-copy-number, broad-host-range plasmid RSF1010. The plasmid has a size of 13.2 kb and carries the Ap^r, Cm^r, and Tc^r genes. It contains unique PstI, EcoRI, HindIII, BamHI, and SalI sites, all of which are located within the antibiotic resistance genes, therefore all sites are applicable to insertional inactivation. We also constructed pMFY40, a 11.6 kb derivative of pMFY31, by the elimination of the Cm^r gene. Plasmid pMFY31 has been efficiently introduced into a Pseudomonas putida strain not only by plasmid-DNA transformation but also by conjugal co-transfer with the helper plasmid, and was maintained stably in the strain.     

Characterization of Polymeric Microneedle Arrays for Transdermal Drug Delivery

Microfabrication of dissolvable, swellable, and biodegradable polymeric microneedle arrays (MNs) were extensively investigated based in a nano sensitive fabrication style known as micromilling that is then combined with conventional micromolding technique. The aim of this study was to describe the polymer selection, and optimize formulation compounding parameters for various polymeric MNs. Inverse replication of micromilled master MNs reproduced with polydimethylsiloxane (PDMS), where solid out of plane polymeric MNs were subsequently assembled, and physicochemically characterized. Dissolvable, swellable, and biodegradable MNs were constructed to depth of less than 1 mm with an aspect ratio of 3.6, and 1/2 mm of both inter needle tip and base spacing. Micromolding step also enabled to replicate the MNs very precisely and accurate. Polymeric microneedles (MN) precision was ranging from ±0.18 to ±1.82% for microneedle height, ±0.45 to ±1.42% for base diameter, and ±0.22 to ±0.95% for interbase spacing. Although dissolvable sodium alginate MN showed less physical robustness than biodegradable polylactic-co-glycolic acid MN, their thermogravimetric analysis is of promise for constructing these polymeric types of matrix devices.     

Complementary Methods for the Differentiation of Rhizobium meliloti Isolates

Because of the scarcity of literature on the successful use of serological methods for differentiation of Rhizobium meliloti isolates, the objectives of this study were to provide a rationale for selecting isolates to which antisera could be raised and to appraise the suitability of published methods of preparing R. meliloti antigens for the serological identification of field isolates. We used one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis to develop protein profiles of eight field isolates and one commercial inoculant strain of R. meliloti in order to choose candidates that were either identical or distinctly different from each other for the production of antisera. The serological methods of tube agglutination and gel immunodiffusion complemented the sodium dodecyl sulfate-polyacrylamide gel electrophoresis method of identification. On the basis of their agglutination titers and gel immunodiffusion analysis, the isolates were placed in five serogroups which were identical to the groupings based on protein profiles. Antigenic characteristics of gel immunodiffusion antigens were influenced by the composition of the growth medium, sonication of whole-cell antigens, and the addition of Formalin. We recommend that careful attention be given to the effects of varying antigen preparation procedures when analyzing R. meliloti so that experimental protocols do not complicate the results. The wide range of homologous-antiserum titers observed for the nine isolates indicates different inherent degrees of immunogenicity of R. meliloti which cannot be predicted before serum production. The sodium dodecyl sulfate-polyacrylamide gel electrophoresis method is a useful tool for screening a collection of R. meliloti isolates to better ensure that strain-specific antisera representative of different types of organisms will be obtained.     

不同色彩珙桐叶片和苞片解剖结构及色素含量比较研究

以生长于同一生境下的粉红珙桐(粉红色叶片、苞片)与普通珙桐(绿色叶片、白色苞片)为试材,对比两种色彩珙桐叶片/苞片解剖结构和色素含量的差异,以揭示珙桐色彩转变的规律。结果显示：(1)两种珙桐叶片均属于异面叶类型,栅栏组织由一层长柱形细胞整齐排列而成,海绵组织排列疏松,部分粉红叶片的上表皮细胞向外凸起,绿叶无此现象;粉红叶片的总厚度及其表皮角质层、栅栏组织和海绵组织厚度都高于绿叶,而表皮较薄。(2)两种珙桐苞片均无栅栏组织和海绵组织的分化,粉红苞片上表皮细胞明显隆起,上表皮角质层增厚,而下表皮变薄。(3)粉红叶片的类黄酮、花色苷含量分别是绿色叶片的1.52倍、3.67倍,两者的光合色素含量无显著差异,但粉红叶片的叶绿素a/b值比绿色叶低很多;粉红苞片花色苷含量显著高于白色苞片,而两者类黄酮含量差异不大。研究表明,花色苷是珙桐叶片和苞片色彩转红的直接因素,类黄酮有助于叶片呈红色;粉红珙桐叶片/苞片的解剖结构发生了一定变化,对光能的利用效率更高,对阴湿环境的适应性增强。     

赤潮的分类分级标准及预警色设置

为便于赤潮信息的发布、统计和管理,依据我国赤潮发生的特点初步制定了我国赤潮的分类分级及预警色划分的标准。根据形成赤潮的生物种类特性及其对人类健康和近岸水产养殖的影响,将我国赤潮分为有毒赤潮、鱼毒赤潮、有害赤潮和无害赤潮4种类型,考虑到我国沿海赤潮发生面积和持续时间相差巨大,将我国赤潮分为大型、中型和小型3个级别。由此,将我国赤潮分为12种,并依次用不同颜色和符号代表之,以利于在媒体上发布。在此基础上,制定了不同类型赤潮的预警机制和管理措施,为赤潮防灾减灾工作提供参考。     

Asymmetric Binary Plasmon Resonator Arrays for Perfect Trapping of Light

We propose to achieve perfect trapping of light with asymmetric binary plasmon resonator arrays on metal substrates, in which antisymmetrically coupled resonance modes are excited in each subwavelength period to eliminate any leaky radiation. The specific structure in the study is an ultrathin binary metal stripe array on a flat metal substrate interspaced with a dielectric layer. The antiphase resonance modes are excited underneath the binary metal stripes in each period, resulting in perfect trapping of light under appropriate difference of the metal stripe widths. The trapped light is fully absorbed by metals, accompanied with an improved enhancement of the local field compared to those in symmetric structures with equal metal stripe widths. The work suggests a new way in designing optical metamaterials to manipulate light for enhanced light-matter interactions.