Taxonomic composition of bacteria associated with cultivated mollusks <Emphasis Type="Italic">Crassostrea lugubris</Emphasis> and <Emphasis Type="Italic">Perna viridis</Emphasis> and with the water of the Gulf of Nha Trang lagoon,Vietnam

One hundred and four strains of heterotrophic bacteria have been isolated and characterized from two species of bivalve mollusks cultivated in the Gulf of Nha Trang (Vietnam) and from the water of a mariculture farm. The isolates have been identified on the basis of morphological, physiological, biochemical, and chemotaxonomic properties, as well as by the content of G+C bases in DNA. In the microflora of mollusks, Vibrio alginolyticus was predominant; the pathogenic species V. harveyi and V. splendidus were found as well. Staphylococci and bacilli occupied the second place in abundance after vibrios. In addition, coryneforms and enterobacteria, as well as Pseudomonas spp. and Pseudoalteromonas spp., were revealed. The composition of the water microflora was more diverse as compared with the microflora of mollusks. In the water, Bacillus spp., Vibrio spp., and Pseudomonas spp. were predominant. Brevibacterium spp. and other coryneform bacteria, as well as enterobacteria, occurred in significant amounts. In addition, Pseudoalteromonas spp., Marinococcus sp., Halobacillus sp., Shewanella sp., Sulfitobacter sp., and bacteria of the CFB cluster were noticed. The presence of pathogenic and conditionally pathogenic bacterial species in the water and mollusks is probably the reason for the high death rate of cultivated animals at the mariculture farm.     

The role of <Emphasis Type="Italic">Viviparus contectus</Emphasis> (Millet) (Mollusca,Viviparidae) in the sedimentation of suspension and transformation of organic matter in the Tnya River (Ukraine)

As active filterers and sedimentators, mollusks Viviparus contectus (Millet) clear water from suspensions in the Tnya River. The sedimentation ability of mollusks is assessed on the basis of experimental studies at three stations using the funneling technique. Mollusks at the age of 3 and 5 years are used. The rate of sedimentation of V. contectus is 7.3 to 13.7 mg/(spec. day) in July 2014. The efficiency of suspended sedimentation is higher in younger individuals. The rate of sedimentation is determined by the total body weight of mollusks; the ratio between these parameters is described by the exponential function. V. contectus contributes to the decrease in the content of organic matter in the water with a rate of 0.055 to 0.069 mg of O₂/(dm³ spec. h), as well as to the enrichment of the near-bottom water layer with organic matter.     

Patterns of individual growth of gray garden slug <Emphasis Type="Italic">Deroceras reticulatum</Emphasis>

Individual growth of gray garden slug Deroceras reticulatum was studied under laboratory conditions in the period from collection to death. The studied population demonstrated different patterns of growth. Three groups of slugs were recognized: (1) slugs that reached the maximum weight after 4 months of raring, after which their weight rapidly decreased (the life span in culture was 6–7 months); (2) slugs that have not reached the maximum weight until death (the life span was 6–7 months); (3) slugs that reached the maximum weight after 7–8 months, after which their weight oscillated with a trend to decrease (the life span was about 10 months). The obtained data were approximated by the equation of finite growth.     

Feeding behavior,ration and size structure of a population of the predatory gastropod <Emphasis Type="Italic">Cryptonatica janthostoma</Emphasis> in Vostok Bay,Sea of Japan

The relationships between the shell height of the predatory gastropod Cryptonatica janthostoma and the shell length of its typical prey, the bivalve Ruditapes philippinarum, and the diameter of the borehole on the prey shell resulting from a successful attack of the predator were experimentally found and assessed statistically. The shell height of C. janthostoma calculated retrospectively from the borehole diameter using the obtained relationships was 17–52 mm. The prey of C. janthostoma are burrowing bivalves, whose populations are affected by the predator to a varying degree. In populations of medium-sized mollusks (R. philippinarum, Protothaca euglypta, P. jedoensis, and others), C. janthostoma feeds on mollusks larger than 7–10 mm; in species with a shell length greater than 100 mm (Callista brevisiphonata, Saxidomus purpuratus), it eats specimens of 10–58 mm. C. janthostoma apparently has no effect on populations of small-sized mollusks (Anisocorbula venusta) and mollusks with an active avoidance response (Clinocardium californiense).     

The effect of environmental conditions on distribution,growth and life span of <Emphasis Type="Italic">Protothaca euglypta</Emphasis> (Mollusca: Bivalvia)

The distribution and growth of the bivalve mollusk Protothaca euglypta in Peter the Great Bay and at the northern boundary of its area were investigated. It is shown that in some biotopes P. euglypta biomass reaches 1–2 kg/m², which exceeds the estimated values of abundance obtained for most associated species of mollusks. It has been established that local variability of P. euglypta growth rates can be compared with latitudinal variability, and the life span increases from the southern part of the area towards its northern boundary. It has been concluded that P. euglypta occupies a more prominent position in the malacofauna of shallow waters in its abundance, than it was considered earlier.     

Population structure and growth of the Japanese littleneck clam <Emphasis Type="Italic">Ruditapes philippinarum</Emphasis> in Amursky Bay,Sea of Japan

This paper deals with the size, age, and sex structure of population and growth of the Japanese littleneck clam Ruditapes philippinarum in Amursky Bay (Peter the Great Bay, Sea of Japan). One-year-olds and individuals with a shell length less than 19.8 mm were not found in the population under study. The population consisted mostly of 3-4-year-old clams (72.4%) with a shell length of 35–45 mm (67.8%). The maximum recorded age of R. philippinarum was 7 years, and maximum shell length was 52.7 mm. The male to female ratio was approximately 2: 1. Hermaphroditism (2.1%) and parasitic castration (1.4%) were observed. Linear growth rates of clams were found to increase until the age of three years old (11.6 ± 0.6 mm/year). Mollusks reach a commercial size of over 35 mm in shell length in the fourth year of life. The parameters of the von Bertalanffy equation describing group linear growth were L _∞ = 56.6 mm, k = 0.302 year^?1, and t ₀ = 0.468 year. The relationship between the shell length and the wet body weight is described by the equation W = 0.000253L^2.954.     

Detection of Insertions/Deletions Within <Emphasis Type="Italic">SIRT1</Emphasis>, <Emphasis Type="Italic">SIRT2</Emphasis> and <Emphasis Type="Italic">SIRT3</Emphasis> Genes and Their Associations with Body Measurement Traits in Cattle

Growth traits are complex quantitative traits controlled by numerous candidate genes, and they can be well-evaluated using body measurement traits. As the members of the nicotinamide adenine dinucleotide-dependent family of histone deacetylases, class I sirtuin genes (including SIRT1, SIRT2 and SIRT3) play crucial roles in regulating lipid metabolism, cellular growth and metabolism, suggesting that they are potential candidate genes affecting body measurement traits in animals. Hence, the objective of this work aimed to detect novel insertions/deletions (indels) of SIRT1, SIRT2 and SIRT3 genes in 955 cattle belonging to five breeds, as well as to evaluate their effects on body measurement traits. Herein, the novel 12-bp indel of SIRT1 gene, the 7-bp indel of SIRT2 gene and the 26-bp indel of SIRT3 gene were firstly reported, respectively. The association analysis indicated that the indels within SIRT1 and SIRT2 genes were significantly associated with body measurement traits such as body weight, chest circumference, height at hip cross, hip width, body height, etc. (P?<?0.05 or P?<?0.01). Therefore, based on these findings, the two novel indel variants within bovine SIRT1 and SIRT2 genes could be considered as potential molecular markers for growth traits in cattle selection practices and breeding.     

The effects of polymorphisms in <Emphasis Type="Italic">growth hormone</Emphasis> and <Emphasis Type="Italic">growth hormone receptor</Emphasis> genes on production and reproduction traits in Aberdeen-Angus cattle (<Emphasis Type="Italic">Bos taurus</Emphasis> L., 1758)

The study was aimed to analyze the relation between individual genotypes and allelic variants of SNPs g.2141C>G of growth hormone gene, g.914T>A and g.257A>G of growth hormone receptor gene with growth and reproduction traits and to evaluate the populationgenetic structure in Aberdeen-Angus cattle (Bos taurus L., 1758) sample of Eastern Ukraine according SNPs studied. Allele C of SNP g.2141C>G has a positive correlation with birth weight, body stature, bigger rump, udder and total exterior evaluation score, shorter calving interval and better calve birth weight and negative correlation with calve average daily gain. Allele T of SNP g.914T>A has positive correlation with the muscle and udder size; live weight in each age, average daily gain, weight and average daily gain of calves born conform to the principle AA>TT≥TA. SNP g.257A>G showed a positive correlation for G allele with muscle size. The population is in equilibrium for SNPs g.2141C>G and g.257A>G, and in disequilibrium for SNP g.914T>A. The analysis showed no linkage disequilibrium between SNPs g.914T>A and g.257A>G. Inbreeding coefficient F_ST in Aberdeen-Angus group studied was 16.1%.     

Age,growth and reproduction of the Asian sheephead wrasse <Emphasis Type="Italic">Semicossyphus reticulatus</Emphasis> in the western Seto Inland Sea,Japan

The Asian sheephead wrasse, Semicossyphus reticulatus, is the largest labrid in temperate waters around Japan. However, the growth pattern of this wrasse remains unclear. Age, growth, and reproduction of S. reticulatus specimens were investigated by sampling in the western Seto Inland Sea, Japan. Opaque ring marks formed on the marginal zone of sectioned otoliths during February–March, suggesting their validity for age estimates. The largest individual was a male, with a standard length (SL) of 591 mm, weight of 8.5 kg, and age of 17 years. Males had significantly larger SLs and older ages than females, and male gonads were histologically confirmed to have secondary testis structures retaining central lumens, suggesting monandric protogyny. The oldest S. reticulatus individual captured was estimated to be a 31-year-old male. The von Bertalanffy growth equation calculated from estimated age and SL was L _t = 489 (1 ? e^{?0.12 (t + 1.75)}), indicating considerably slow growth, particularly after the age of 10 years, which is similar to that of the California sheephead wrasse, Semicossyphus pulcher. The humpheads of S. reticulatus enlarged gradually as their body grew, often resulting in a conspicuous humphead, even in large females.     

The high level of nutritional niche overlap between red fox (<Emphasis Type="Italic">Vulpes vulpes</Emphasis>) and sympatric golden jackal (<Emphasis Type="Italic">Canis aureus</Emphasis>) affects the body weight of juvenile foxes

In the period of August 2013 to September 2015, we collected and measured the body weight of 246 red fox (Vulpes vulpes) carcasses collected during hunts. A portion of these red foxes (n = 153) was originally from habitats they shared with the golden jackal (Canis aureus), while the other portion (n = 93) had almost no contact with this species. We analyzed the body weight of red foxes from both areas according to age (adult-cub) as well as gender. We have found that the younger animals that live sympatrically with the golden jackal weigh less than those from the golden jackal-free territory regardless of gender. In the case of adult red foxes, the habitat-related differences between body weight were found to be insignificant. These results suggest that the high level of nutritional niche overlap between sympatric red fox and golden jackal could affect the body weight of juvenile red foxes.     

<Emphasis Type="Italic">Agaricus bisporus</Emphasis> supplementation reduces high-fat diet-induced body weight gain and fatty liver development

Obesity is a global epidemic characterized not only by excessive fat deposition but also by important complications such as nonalcoholic liver steatosis. Beneficial antiobesogenic effects have been described for some mushrooms. The current study aimed to demonstrate the protective effect of Agaricus bisporus (AB) supplementation against the metabolic alterations induced by high-fat-diet (HFD) feeding. Eight-week-old C57BL/6J mice were fed for 10 weeks with one of the following diets: (1) control diet (n?=?7), (2) HFD (n?=?7), (3) HFD supplemented with 5% AB (n?=?9), and (4) HFD supplemented with 10% AB (n?=?9). A pair-fed group was also included for the 10% AB group (n?=?6). The impact of AB supplementation on food intake, body weight gain, and liver and fat pad weights was examined. Biochemical, histological, and molecular parameters were also analyzed. Dietary supplementation with 10% AB reduced the HFD-induced increase in body, epididymal, and mesenteric fat weights (p?<?0.01, p?<?0.05, and p?<?0.05, respectively). Supplementation with AB also reduced liver damage in a dose-dependent manner (p?<?0.01 and p?<?0.001). This effect was confirmed by histological analysis that showed that liver steatosis was markedly reduced in mice fed with AB. The beneficial properties of 10% AB supplementation appear to be mediated through a decrease in food intake and via stimulation of mesenteric and hepatic free-fatty acid beta-oxidation, along with a decrease in epidydimal and hepatic expression of CD36. In conclusion, supplementation with AB prevents excessive body weight gain and liver steatosis induced by HFD consumption.     

Trophic differentiation of the nosed charr <Emphasis Type="Italic">Salvelinus schmidti</Emphasis> Viktorovsky, 1978 in Lake Kronotskoe (Kamchatka)

The nosed charr Salvelinus schmidti that inhabits the littoral zone of Lake Kronotskoe is divided into two groups according to food preferences and parasite fauna. Fish of the first group (G) predominantly feed on gammarids and are characterized by a high infestation with Cystidicola farionis, Cyathocephalus truncatus, and Crepidostomum spр. Fish of the second group (A) do not consume gammarids but feed mostly on chironomid larvae and pupae and on mollusks; the predominant parasites are Phyllodistomum umblae and Proteocephalus longicollis. The significant difference in the abundance of C. farionis, which remains in fish at least for 2 years, is indicative of a long-term and persistent trophic diversification between the charr groups. Moreover, significantly higher growth rates, a larger body size, and a longer lifespan are observed for fish of group G. The feeding strategy of the nosed charr is maintained throughout the life and does not depend on the sex of fish and their distribution within the littoral zone of the lake.     

High level of tetracosapolyenoic fatty acids in the cold-water mollusk <Emphasis Type="Italic">Tochuina</Emphasis><Emphasis Type="Italic">tetraquetra</Emphasis> is a result of the nudibranch feeding on soft corals

Fatty acid (FA) markers are used to trace predator–prey relationships in the marine environment. Soft corals contain tetracosapolyenoic acids (TPA), namely 24:5n-6 and 24:6n-3, which are considered as octocoral FA markers. The nudibranch mollusks are known to feed on soft corals. To check whether TPA are transferred from soft corals to nudibranch mollusks during their nutrition, we determined and compared FA compositions of total lipids of Tochuina tetraquetra and soft corals (Acanella sp., Anthomastus rylovi, Gersemia fruticosa, and Paragorgia arborea) collected together near the Kuril Islands (the depths of 80–550 m). FA compositions of T. tetraquetra, Acanella sp. and A. rylovi were described for the first time. In Acanella sp., G. fruticosa, A. rylovi, and P. arborea, the average contents of TPA were 6.5, 13.4, 5.9, and 12.0 % of total FAs, whereas the 24:5n-6/24:6n-3 ratio was 1.0, 1.4, 5.4, and 2.6, respectively. The high level of TPA (21.7 %) found in T. tetraquetra indicates that 24:5n-6 and 24:6n-3 are transferred from soft corals to the mollusks during their feeding and accumulated in mollusk tissues. The most possible feed source of the mollusk is suggested to be G. fruticosa and/or Acanella sp., because the 24:5n-6/24:6n-3 ratios in T. tetraquetra and these soft corals were similar. Thus, the TPA could be used as FA markers to estimate a proportion of soft corals in feeding of cold-water nudibranch mollusks.     

Regulation of population numbers in the <Emphasis Type="Italic">Rana arvalis</Emphasis> frog according to the results of long-term observations on the same population

An analysis of the results of long-term stationary studies (1987–1996) on a Rana arvalis population showed that the mean body length and reproductive parameters of females increased with age. Significant interannual changes in body length and egg size (but not in fecundity and reproductive effort) were also accounted for by conditions of the warm season preceding the breeding season. The dependence of egg diameter and reproductive effort on the female body length weakened with age, and only the relationship between body length and fecundity was characterized by positive allometry. The survival rate of mature females depended on the premetamorphic survival rate and, therefore, was higher in earlier generations, in which the aquatic phase proceeded under more favorable conditions. The rate of reproduction (R ₀) decreased and, therefore, further population growth slowed down only after the initial abundance of the generation had reached a relatively high level. An increase in the initial abundance of the generation exerts a strong influence on R ₀ via a decrease in the survival of premetamorphic animals and, to a lesser extent, via a decrease in the body length and fecundity of tree-and four-year-old females. Changes in the annual abundance of breeding females in R. arvalis were more abrupt and less prolonged than those in the sympatric R. temporaria population. The holding capacity of the environment for the aquatic phase of the R. arvalis life cycle was higher than that for R. temporaria. Therefore, the population abundance of R. arvalis, compared to R. temporaria, was not subject to stringent negative feedback regulation dependent on the initial number of animals.     

Antagonistic roles in fetal development and adult physiology for the oppositely imprinted <Emphasis Type="Italic">Grb10</Emphasis> and <Emphasis Type="Italic">Dlk1</Emphasis>genes

Background

Despite being a fundamental biological problem the control of body size and proportions during development remains poorly understood, although it is accepted that the insulin-like growth factor (IGF) pathway has a central role in growth regulation, probably in all animals. The involvement of imprinted genes has also attracted much attention, not least because two of the earliest discovered were shown to be oppositely imprinted and antagonistic in their regulation of growth. The Igf2 gene encodes a paternally expressed ligand that promotes growth, while maternally expressed Igf2r encodes a cell surface receptor that restricts growth by sequestering Igf2 and targeting it for lysosomal degradation. There are now over 150 imprinted genes known in mammals, but no other clear examples of antagonistic gene pairs have been identified. The delta-like 1 gene (Dlk1) encodes a putative ligand that promotes fetal growth and in adults restricts adipose deposition. Conversely, Grb10 encodes an intracellular signalling adaptor protein that, when expressed from the maternal allele, acts to restrict fetal growth and is permissive for adipose deposition in adulthood.

Results

Here, using knockout mice, we present genetic and physiological evidence that these two factors exert their opposite effects on growth and physiology through a common signalling pathway. The major effects are on body size (particularly growth during early life), lean:adipose proportions, glucose regulated metabolism and lipid storage in the liver. A biochemical pathway linking the two cell signalling factors remains to be defined.

Conclusions

We propose that Dlk1 and Grb10 define a mammalian growth axis that is separate from the IGF pathway, yet also features an antagonistic imprinted gene pair.

     

New ideas on the system of the Permian <Emphasis Type="Italic">Inoceramus</Emphasis>-like bivalves of the eastern Boreal zone

New concepts of systematics and phylogeny of the Permian Inoceramus-like bivalve mollusks of the eastern part of the Boreal zone are discussed based on analysis of the group’s historical development. All taxa studied are referred to the family Kolymiidae Kusnezov, which is divided into two subfamilies, Kolymiinae and Atomodesmatinae. In the subfamily Kolymiinae, two new genera are described: Praekolymia with the type species P. archboldi sp. nov. and P. urbajtisae sp. nov., and Taimyrokolymia with the type species T. ustritskyi sp. nov. In the subfamily Atomodesmatinae, two new genera, Costatoaphanaia and Okhotodesma, are described. The development of the group is shown to be generally autochthonous with some invasions (genus Atomodesma and, probably, Trabeculatia) from extraboreal regions.     

Length-weight and length-length relationships of <Emphasis Type="Italic">Cirrhinus mrigala</Emphasis> (Cyprinidae) and <Emphasis Type="Italic">Xenentodon cancila</Emphasis> (Belonidae) from the river Ganga

Length-weight and length-length relationships are presented for two fish species collected during May 2015 to August 2016 from Narora site of the river Ganga. The parameters a and b of the length-weight relationships were estimated after the logarithmic transformation of the equation: W = aL ^b . The lengthlength relationships were also estimated using linear regressions. The coefficients of determination (R ²) values were >0.9 for both target fish species and linear regressions were highly significant (p < 0.001). Length-weight relationship indicated positive allometric growth pattern for Cirrhinus mrigala and negative allometric growth pattern for Xenentodon cancila. Length-length relationships for the selected fish species were also highly significant (R ² > 0.9, p < 0.001).     

Growth and photosynthetic activity of <Emphasis Type="Italic">Botryococcus braunii</Emphasis> biofilms

Botryococcus braunii is a green microalga capable of producing large amounts of external long-chain hydrocarbons suitable as a source of biofuel. There have been several studies indicating that cultures of B. braunii can reduce the energy and water requirement for mass biofuel production, especially if non-destructive extraction methods for milking hydrocarbons are used. Growing microalgae as a raw material for biofuel using conventional liquid-based cultivation (i.e., raceway ponds) has yet to be shown to be economically successful. An alternative solid growth (biofilm) cultivation method can markedly reduce the energy requirements and costs associated with the harvesting and dewatering processes. We evaluated the growth of biofilms of several strains of B. braunii (from races A, B, L and S) and found that three of the four tested races successfully grew to stationary phase in 10 weeks with no contamination. Among all races, B. braunii BOT22 (race B) reached the highest biomass and lipid yields (3.80 mg dry weight cm^?2 day^?1 and 1.11 mg dry weight cm^?2). Irrespective of the race, almost all photosynthetic parameters (F _V /F ₀ , PI_ABS and the OJIP curve) showed that the biofilm cultures were more stressed during lag and stationary phases than in logarithmic phase. We also studied the Botryococcus biofilm profiles using confocal microscopy and found that this method is suitable for estimating the overall biomass yield when compared with gravimetric measurement. In conclusion, the growth characteristics (biomass and lipid) and photosynthetic performance of all races indicated that B. braunii BOT22 is the most promising strain for biofilm cultivation.     

The Effect of Mutation <Emphasis Type="Italic">dominant spotting-Yurlovo</Emphasis> (<Emphasis Type="Italic">Kit</Emphasis><Superscript><Emphasis Type="Italic">W-Y</Emphasis></Superscript>) on Spermatogenesis,Early Embryogenesis,and Fertility of C57BL/6JY Mice

The effect of mutation Kit ^W-Y found in C57BL/6 mice on fertility, spermatogenesis, and early embryogenesis of mice have been studied. If heterozygotes Kit ^W /+ are crossed with wild-type mice, fertility decreases by 20%. Homozygotes Kit ^W-Y /Kit ^W-Y and compounds Kit ^W-Y /Kit ^Ssm are nonviable. The study of spermatogenesis in Kit ^W /+ mice has demonstrated a negative effect of this mutation on spermatocytes. Histological examination of the testes of mutant males has shown local empty spaces in seminal ducts. Electron microscopic examination of synaptonemal complexes have demonstrated desynapsis disturbance in some nuclei at the diplotene stage of meiotic prophase I. However, these disturbances do not cause a decrease in the number of fertilized oocytes/ova. The decrease in fertility is accounted for disturbances of early embryogenesis. In vivo and in vitro analyses of early embryogenesis have demonstrated that cleavage divisions are asynchronous in Kit ^W-Y /+ heterozygous embryos. Some of these embryos die before implantation, and others cleave more rapidly than wild-type embryos, which give them selective advantage during the postimplantation period of embryogenesis. The pattern of Kit ^W-Y expression during spermatogenesis and embryogenesis mimics potential human pathology, which makes these mutants an interesting and valuable object for genetics and developmental biology.     

Association between expression levels and growth trait-related SNPs located in promoters of the <Emphasis Type="Italic">MC4R</Emphasis> and <Emphasis Type="Italic">MSTN</Emphasis> genes in <Emphasis Type="Italic">Spinibarbus hollandi</Emphasis>

Melanocortin 4 receptor: (MC4R) and Myostatin (MSTN) are two important growth trait-related genes in animals. In this study, we showed that two SNPs, MC4R-719A>G and MSTN-519C>T, found in the promoters of the MC4R and MSTN genes, respectively, are both associated with growth traits in Spinibarbus hollandi. Furthermore, we observed that there were significant associations between the expression levels of the MC4R and MSTN genes and these two growth trait-related SNPs. The expression level of MC4R gene in brain was lower in GG genotype fish with extremely high growth performance than that in AA genotype fish with extremely low growth performance. Expression level of the MSTN gene in muscle was lower in TT genotype fish with extremely high growth performance than that in CC and CT genotype fish with lower growth performance. The results indicated that these SNPs located in the promoters of MC4R and MSTN are associated with growth-related traits through modification of gene expression levels. The MSTN and MC4R SNPs may have useful application in effective marker-assisted selection aimed to increase output in S. hollandi.