The imprint of coarse woody debris on soil chemistry in the Western Oregon Cascades

Coarse woody debris (CWD) may create a spatially discrete soil imprint through the release of carbon rich, acidic dissolved organic matter (DOM). DOM has been implicated in many soil processes such as humus formation, nutrient immobilization, podzolization, and the dissolution of soil minerals. We investigated a potential CWD imprint on soil chemistry by sampling leachates and soil solutions under CWD at different stages of decay and under the forest floor as controls. Solutions were analyzed for total dissolved organic carbon (DOC) and polyphenol concentrations. DOC was further separated by chemical fractionation. We also sampled soil from underneath CWD and from control areas without CWD. Samples were analyzed for pH, base saturation, exchangeable acidity, and several aluminum and iron fractions. The pH of CWD leachates was lower (p 0.001) and contained more polyphenols (p 0.0001) and DOC than control leachates, although chemical DOC fractions from CWD and the forest floor were similar. Surface mineral soils under CWD were lower in pH (p 0.005), had more exchangeable acidity (p 0.002) and more exchangeable aluminum (p 0.04) and iron (p 0.06) than forest floor soils. At depths greater than 5 cm, there were no differences between forest floor soils and soils under CWD. Our results suggest that CWD in the middle stages of decay acidifies the surface soil as it decomposes by decreasing exchangeable bases and increasing exchangeable acidity and aluminum. Soils under the most highly decayed CWD, or deeper soils were not affected by CWD. Although we hypothesized that well-decayed CWD would show a spatially explicit imprint on soils, the effect of CWD on soil chemistry was small and limited to surface mineral soils.     

Effects of Succession on Nitrogen Export in the West-Central Cascades, Oregon

This study examined impacts of succession on N export from 20 headwater stream systems in the west central Cascades of Oregon, a region of low anthropogenic N inputs. The seasonal and successional patterns of nitrate (NO₃−N) concentrations drove differences in total dissolved N concentrations because ammonium (NH₄−N) concentrations were very low (usually < 0.005 mg L⁻¹) and mean dissolved organic nitrogen (DON) concentrations were less variable than nitrate concentrations. In contrast to studies suggesting that DON levels strongly dominate in pristine watersheds, DON accounted for 24, 52, and 51% of the overall mean TDN concentration of our young (defined as predominantly in stand initiation and stem exclusion phases), middle-aged (defined as mixes of mostly understory reinitiation and older phases) and old-growth watersheds, respectively. Although other studies of cutting in unpolluted forests have suggested a harvest effect lasting 5 years or less, our young successional watersheds that were all older than 10 years still lost significantly more N, primarily as NO₃−N, than did watersheds containing more mature forests, even though all forest floor and mineral soil C:N ratios were well above levels reported in the literature for leaching of dissolved inorganic nitrogen. The influence of alder may contribute to these patterns, although hardwood cover was quite low in all watersheds; it is possible that in forested ecosystems with very low anthropogenic N inputs, even very low alder cover in riparian zones can cause elevated N exports. Only the youngest watersheds, with the highest nitrate losses, exhibited seasonal patterns of increased summer uptake by vegetation as well as flushing at the onset of fall freshets. Older watersheds with lower N losses did not exhibit seasonal patterns for any N species. The results, taken together, suggest a role for both vegetation and hydrology in N retention and loss, and add to our understanding of N cycling by successional forest ecosystems influenced by disturbance at various spatial and temporal scales in a region of relatively low anthropogenic N input.     

不同森林恢复类型对土壤微生物群落的影响

为了评价不同森林恢复类型与方式对南方红壤丘陵区退化生态系统土壤微生物群落的影响,借助氯仿熏蒸法、平板涂抹法和BIOLOG检测法,比较研究了4种森林恢复类型土壤微生物的群落特征．结果表明,4种森林恢复类型土壤微生物生物量碳、细菌数量差异显著,2项指标均以天然次生林土壤最高,人工林次之,荒地最差;碳源平均颜色变化率(AWCD法)和微生物代谢多样性指数(丰富度和多样性)在5种植被类型的土壤中也有明显差异,其趋势与微生物量碳、细菌数量基本相同;天然次生林土壤微生物群落利用碳源的整体能力和功能多样性比人工林和荒地强．相关分析表明,0～20和20～40cm土壤微生物的代谢多样性与根系生物量紧密相关(r=0．933,P<0．05;r=0．925,P<0．05)．自然恢复更有利于改善土壤微生物的结构和功能．     

恩诺沙星对土壤微生物群落功能多样性的影响

为了评价恩诺沙星(enrofloxacin)对土壤微生物群落的影响,借助BIOLOG检测法比较了不同浓度恩诺沙星影响下的土壤微生物的群落特征。结果表明,各添加药物组与空白对照组的土壤微生物群落代谢多样性差异显著(P<0.05),空白对照组土壤微生物在BIOLOG微平板上的平均每孔颜色变化率(AWCD)和微生物代谢多样性指数(丰富度和多样性)显著高于添加药物组;药物显著影响微生物群落对BIOLOG微平板中碳源的利用能力,较低浓度的恩诺沙星(0.01μg/g)就显著影响了土壤微生物群落对α-Ketobutyric Acid、L-Phenylalanine、1-Erythritol、D-Xylose等碳源的利用代谢能力(P<0.05),且土壤微生物群落利用各类碳源的能力随药物浓度加大而降低。由此可见,恩诺沙星在土壤中残留时对土壤微生物的影响不容忽视。     

间作栽培对连作马铃薯根际土壤微生物群落的影响

连作严重影响了作物的产量和品质,而土壤微生物群落结构与功能对土壤生态系统和植物健康至关重要。以连作10a土壤为基质,单作马铃薯为对照,采用磷脂脂肪酸(Phospholipid fatty acids)、BIOLOGA技术和真菌形态学鉴定方法,研究了玉米、蚕豆与马铃薯间作模式下土壤微生物群落结构、功能和丛植菌根(Arbuscular Mycorrhizal)真菌对土壤环境变化的响应。结果表明:间作调控下,马铃薯根际土壤微生物主要类群结构发生显著改变;玉米间作马铃薯,土壤微生物群落总生物量降低,但群落功能多样性提高,促进了以羧酸类、多聚化合物、芳香类化合物、氨基酸类化合物为碳源的微生物类群代谢活性增强;蚕豆间作增加了土壤微生物总生物量,仅促进了以碳水化合物为碳源的微生物类群代谢活性。间作改变了作物根际土壤AM真菌的种、属数,AM真菌多样性降低,优势种由明球囊霉、地球囊霉转变为玉米间作体系里的福摩萨球囊霉、球泡球囊霉;蚕豆间作体系里福摩萨球囊霉和疣状无梗囊霉是优势种。间作栽培下AM真菌优势种群的变化可能受植物间的共生关系、微生物结构与功能等因素的制约。间作条件下,玉米显著影响了马铃薯根际土壤微生物群落功能多样性,而蚕豆则显著改变了微生物群落结构多样性;玉米、蚕豆对马铃薯根际土壤微生物群落功能与结构变化的影响不同步;间作调控后持续的土壤微生物群落结构与功能观察才有助于解释土壤微生物结构变化引起的功能响应。     

转抗菌肽D烟草对土壤微生物群落的影响

采用RAPD分子标记技术研究了种植转抗菌肽D烟草的土壤环境中微生物群落遗传多样性的变化,同时用传统平板培养法研究了土壤中可培养微生物在数量上的变化。RAPD分析结果表明,转抗菌肽D烟草与非转基因烟草根围微生物的遗传多样性相关指数并没有显著差异。培养计数结果表明,转抗菌肽D烟草与非转基因烟草根围可培养细菌在数量上有极显著差异,可培养真菌数量有显著减少,可培养放线菌的数量没有显著差异。说明转抗菌肽D烟草可能抑制了病原细菌及其根围相关的微生物,但是不影响微生物的遗传多样性。     

转基因水稻对土壤微生物群落结构及功能的影响

以非转基因水稻为对照,以变性梯度凝胶电泳(DGGE)和Biolog技术为手段,研究了2种转基因水稻对土壤微生物群落结构及功能的影响。结果显示:转基因水稻仅在生长发育旺盛期对土壤细菌数量有显著影响;且不同品种转基因水稻土壤微生物间的遗传距离大于转基因水稻与对照间土壤微生物的距离,即2个转基因水稻品种对土壤微生物群落遗传多样性的影响均不显著;在水稻抽穗期,2种转基因水稻与其对照的土壤微生物群落在72h时的平均光密度呈现显著差异,而到了成熟期则差异不显著。土壤微生物群落多样性指数和均匀度指数也表现出类似趋势。本试验证明,在水稻生长发育旺盛时期,Mclntosh指数(u)是一个有效区分转基因水稻和非转基因水稻土壤微生物群落多样性的指标。     

环丙沙星对土壤微生物量碳和土壤微生物 群落碳代谢多样性的影响

采用氯仿熏蒸浸提法和Biolog法,分析环丙沙星作用下的土壤微生物量碳和微生物群落碳代谢多样性,以揭示环丙沙星在环境中残留对土壤微生物学性状的影响.结果表明,环丙沙星(wCIP≥0.1 μg/g)对土壤微生物量碳含量影响显著(P＜0.05),土壤中环丙沙星浓度愈高,微生物量碳含量愈低,100μg/g的环丙沙星处理使土壤微生物量碳含量下降58.69％.环丙沙星对土壤微生物群落碳代谢功能影响显著,环丙沙星降低了土壤微生物对碳水化合物、羧酸、氨基酸、聚合物、酚类和胺类的碳源利用率;环丙沙星(wCIP≥0.1 μg/g)显著影响了土壤微生物群落碳源代谢强度和代谢多样性,但不同浓度的环丙沙星对土壤微生物群落碳代谢功能的影响不同,0.1、1、10 μg/g的环丙沙星处理对土壤微生物群落碳代谢功能的影响主要表现在处理前期(用药第7天、21天),这种影响在处理后期(用药第35天)表现不明显,100μg/g的环丙沙星在用药的前期和后期均显著影响土壤微生物群落碳代谢功能,土壤中环丙沙星积累到该浓度可能对土壤微生物群落碳代谢功能产生难以逆转的长期影响.     

Effects of grassland species on decomposition of litter and soil microbial communities

Decomposition of litter is greatly influenced not only by its chemical composition but also by activities of soil decomposers. By using leaf litter from 15 plant species collected from semi-natural and improved grasslands, we examined (1) how interspecific differences in the chemical composition of litter influence the abundance and composition of soil bacterial and fungal communities and (2) how such changes in microbial communities are related to the processes of decomposition. The litter from each species was incubated in soil of a standard composition for 60 days under controlled conditions. After incubation, the structure of bacterial and fungal communities in the soil was examined using phospholipid fatty-acid analysis and denaturing gradient gel electrophoresis. Species from improved grasslands had significantly higher rates of nitrogen mineralization and decomposition than those from semi-natural grasslands because the former were richer in nitrogen. Litter from improved grasslands was also richer in Gram-positive bacteria, whereas that from semi-natural grasslands was richer in actinomycetes and fungi. Nitrogen content of litter also influenced the composition of the fungal community. Changes in the composition of both bacterial and fungal communities were closely related to the rate of litter decomposition. These results suggest that plant species greatly influence litter decomposition not only through influencing the quality of substrate but also through changing the composition of soil microbial communities.     

Effects of invasive aquatic carrion on soil chemistry and terrestrial microbial communities

Carrion plays a crucial role in the recycling of nutrients and organic matter in ecosystems. Yet, despite their ecological importance, studies addressing the relevance of carrion originated from invasive alien species (IAS) in the interface between aquatic and terrestrial ecosystems are uncommon, especially those assessing belowground effects. In this study, we carried out a manipulative experiment to assess the impact of massive mortalities of the Asian clam Corbicula fluminea (Müller, 1774) as a carrion subsidy evaluating possible effects on the terrestrial soil chemistry and the structure of a microbial (bacteria and fungi) community. We placed five levels of C. fluminea density (0, 100, 500, 1000 and 2000 ind. m^?2) and samples were collected 7, 30 and 90 days after clams’ addition. The results revealed that C. fluminea carrion have a significant effect belowground, especially on nutrients content (mainly NH₄ ⁺, NO₂ ^?, NO₃ ^? and PO₄ ^3?), fungal biomass and fungal and bacterial diversity. Given the predicted increase and intensification of extreme climatic events and the widespread distribution of several aquatic IAS (including bivalve species such as C. fluminea) the ecological importance of these massive mortalities (and resulting carrion) cannot be ignored because they may affect microbial communities with significant impacts on nutrient cycling, even in adjacent terrestrial habitats.     

内蒙古草原典型植物对土壤微生物群落的影响

为了分析内蒙古草原不同植物物种对土壤微生物群落的影响, 采用实时荧光定量PCR (real-time PCR)以及末端限制性片段长度多态性分析(terminal restriction fragment length polymorphism, T-RFLP)等分子生物学技术, 测定了退化-恢复样地上几种典型植物的根际土壤和非根际土壤中细菌和真菌的数量及群落结构。结果表明, 不同植物物种对根际和非根际细菌及根际真菌数量均有显著影响。根际土壤中的细菌和真菌数量普遍高于非根际土壤, 尤其以真菌更为明显。对T-RFLP数据进行多响应置换过程(multi-response permutation procedures, MRPP)分析和主成分分析(principal component analysis, PCA), 结果表明, 大多数物种的根际细菌及真菌的群落结构与非根际有明显差异, 并且所有物种的真菌群落可以按根际和非根际明显分为两大类群。此外, 细菌和真菌群落结构在一定程度上存在按物种聚类的现象, 以细菌较为明显。这些结果揭示了不同植物对土壤微生物群落的影响特征, 对理解内蒙古草原地区退化及恢复过程中植被演替引起的土壤性质和功能的变化有一定的帮助。     

Long-term effects of organic amendments on the recovery of plant and soil microbial communities following disturbance in the Canadian boreal forest

Background and Aims

Ecosystem recovery following disturbance requires the reestablishment of key soil biogeochemical processes. This long-term 7 year study describes effects of organic material, moisture, and vegetation on soil microbial community development in the Athabasca Oil Sands Region of Western Canada.

Methods

Phospholipid fatty acid analysis was used to characterize and compare soil microbial community composition and development on reclaimed and natural forest sites. Additionally, we conducted a laboratory moisture manipulation experiment.

Results

The use of forest floor material as an organic amendment resulted in a greater percent cover of upland vegetation and placed the soil microbial community on a faster trajectory towards ecosystem recovery than did the use of a peat amendment. The soil microbial composition within the reclaimed sites exhibited a greater response to changes in moisture than did the soil microbial communities from natural sites.

Conclusion

Our research shows that the use of native organic amendment (forest floor) on reclaimed sites, and the associated establishment of native vegetation promote the development of soil microbial communities more similar to those found on natural forest sites. Additionally, soil microbial communities from natural sites may be more resistant to changes in soil moisture than those found on reclaimed sites.     

Abiotic drivers and plant traits explain landscape‐scale patterns in soil microbial communities

The controls on aboveground community composition and diversity have been extensively studied, but our understanding of the drivers of belowground microbial communities is relatively lacking, despite their importance for ecosystem functioning. In this study, we fitted statistical models to explain landscape‐scale variation in soil microbial community composition using data from 180 sites covering a broad range of grassland types, soil and climatic conditions in England. We found that variation in soil microbial communities was explained by abiotic factors like climate, pH and soil properties. Biotic factors, namely community‐weighted means (CWM) of plant functional traits, also explained variation in soil microbial communities. In particular, more bacterial‐dominated microbial communities were associated with exploitative plant traits versus fungal‐dominated communities with resource‐conservative traits, showing that plant functional traits and soil microbial communities are closely related at the landscape scale.     

稻草覆盖与间作三叶草对丘陵茶园土壤微生物群落功能的影响

不同的土壤管理方式对土壤的质量有重要影响,而土壤微生物群落功能多样性是反映土壤质量变化的重要指标之一。本研究旨在利用Biolog微孔板鉴定系统研究不同培肥措施下茶园土壤微生物群落功能多样性的变化。比较6种处理的结果发现,与NPK肥＋清耕（CK）相比,平均吸光值（average well color development,AWCD）的变化速度（斜率）和最大值顺序为：饼肥＋PK＋间作三叶草〉NPK肥＋稻草覆盖〉饼肥＋PK＋稻草覆盖〉饼肥＋PK＋清耕〉NPK肥＋间作三叶草〉CK。可见间作三叶草与稻草覆盖不同程度地提高了微生物整体活性和丰富度,其中饼肥＋PK＋间作三叶草处理处理效果最好。分析多样性指数发现,虽然稻草覆盖与间作三叶草对土壤常见微生物种类影响并不大,但微生物群落均匀度有所降低。对碳源利用主成分起分异作用的主要是糖类和羧酸类物质。     

不同树叶凋落物对人参土壤理化性质及微生物群落结构的影响

树种选择是林下山参护育成败的关键,研究树叶凋落物对人参土壤养分、微生物群落结构组成的影响,旨在为林下山参护育选择适宜林地及农田栽参土壤改良提供科学依据和理论指导。通过盆栽试验,研究添加5.0 g色木槭Acer mono.Maxim.var.mono(A)、赤松Pinus densiflora Sieb.et Zucc.(B)、胡桃楸Juglans mandshurica Maxim.(C)、紫椴Tilia amurensis Rupr.(D)、蒙古栎Quercus mongolica Fisch.ex Ledeb.(E)树叶凋落物到土壤中,种植人参(Panax ginseng C.A.meyer)后研究土壤理化性质以及微生物群落结构的变化。结果表明:添加不同树叶处理后人参土壤性质发生改变,土壤p H值显著高于对照土壤5.91(P0.05),土壤全氮、速效氮磷、微生物碳氮在所有树叶处理中显著增加(P0.05),而土壤容重、速效钾和C/N在添加树叶处理中降低。18个土壤样品基因组,经16S和ITS1测序分别得到6064和1900个OUTs。其中细菌涵盖了42门、117纲、170目、213科、225属,真菌涵盖了24门、98纲、196目、330科、435属。不同树叶处理人参土壤细菌和真菌地位发生改变,细菌Proteobacteria是树叶分解的关键微生物,添加树叶后其多样性显著高于对照(P0.05)。而细菌Bacteroidetes和真菌Basidiomycota可能是区别阔叶林和针叶林树种的关键微生物,针叶林中含量显著低于阔叶林(P0.05),而真菌Ascomycota是针叶林分解的关键微生物。进一步从不同分类水平上得到特定树叶凋落物的特异细菌和真菌。典型相关分析(CDA)表明细菌Bacteroidetes、Chloroflexi、Actinobacteria及真菌Basidiomycota、Zygomycota、Chytridiomycota及Ascomycota的位置及多样性的改变均与土壤因子SMBN、TN、AP、SOC、AK、C/N、p H有关。综上所述,添加不同树叶后不仅提高土壤微生物量碳氮、改善土壤理化性质,同时改变微生物群落结构组成,不同树叶处理土壤理化性质不同导致人参土壤微生物组成的差异,本结果对于林下参选地和农田栽参土壤微生物改良具有理论指导作用。     

Impact of fumigants on soil microbial communities.

Agricultural soils are typically fumigated to provide effective control of nematodes, soilborne pathogens, and weeds in preparation for planting of high-value cash crops. The ability of soil microbial communities to recover after treatment with fumigants was examined using culture-dependent (Biolog) and culture-independent (phospholipid fatty acid [PLFA] analysis and denaturing gradient gel electrophoresis [DGGE] of 16S ribosomal DNA [rDNA] fragments amplified directly from soil DNA) approaches. Changes in soil microbial community structure were examined in a microcosm experiment following the application of methyl bromide (MeBr), methyl isothiocyanate, 1,3-dichloropropene (1,3-D), and chloropicrin. Variations among Biolog fingerprints showed that the effect of MeBr on heterotrophic microbial activities was most severe in the first week and that thereafter the effects of MeBr and the other fumigants were expressed at much lower levels. The results of PLFA analysis demonstrated a community shift in all treatments to a community dominated by gram-positive bacterial biomass. Different 16S rDNA profiles from fumigated soils were quantified by analyzing the DGGE band patterns. The Shannon-Weaver index of diversity, H, was calculated for each fumigated soil sample. High diversity indices were maintained between the control soil and the fumigant-treated soils, except for MeBr (H decreased from 1.14 to 0.13). After 12 weeks of incubation, H increased to 0.73 in the MeBr-treated samples. Sequence analysis of clones generated from unique bands showed the presence of taxonomically unique clones that had emerged from the MeBr-treated samples and were dominated by clones closely related to Bacillus spp. and Heliothrix oregonensis. Variations in the data were much higher in the Biolog assay than in the PLFA and DGGE assays, suggesting a high sensitivity of PLFA analysis and DGGE in monitoring the effects of fumigants on soil community composition and structure. Our results indicate that MeBr has the greatest impact on soil microbial communities and that 1,3-D has the least impact.     

内生真菌感染对禾草宿主生境土壤特性和微生物群落的影响

以羊草(Leymus chinensis)-内生真菌共生体为研究对象, 分别在野外样地和室内盆栽两种实验条件下研究了内生真菌感染对土壤特性和微生物群落结构的影响。结果显示：在处理时间较长并伴随有枯落物分解的羊草样地中, 内生真菌感染促进了土壤氮(N)的积累, 提高了30天培养时间内土壤初始碳(C)矿化速率和前3天土壤矿化量和土壤矿化总量; 而在处理时间较短且没有地上枯落物分解的盆栽羊草中, 内生真菌感染对土壤的C、N含量及C矿化均无显著影响。无论是野外样地还是室内盆栽实验, 内生真菌感染均未引起土壤微生物磷脂脂肪酸种类的变化, 但内生真菌感染均有提高土壤微生物生物量的趋势, 内生真菌显著增加了盆栽羊草土壤中细菌、革兰氏阴性细菌、真菌磷脂脂肪酸含量和磷脂脂肪酸总量, 增加了羊草样地土壤中革兰氏阳性细菌和放线菌的磷脂脂肪酸含量。总体看来, 内生真菌感染能够改变土壤N积累和C矿化率, 并且改变土壤中微生物群落的结构, 这有助于进一步认识内生真菌与羊草之间的共生关系及其在生态系统C、N循环中所起的作用。     

不同植物对黄顶菊根际土壤微生物和土壤养分的影响

[目的] 不同植物对外来入侵植物的抵御能力不同,研究不同植物对入侵植物根际土壤生态的影响可为筛选入侵植物的竞争替代植物提供科学依据。[方法] 利用同质园试验,以入侵植物黄顶菊为研究对象,设置黄顶菊单种、黄顶菊与不同植物（地肤、苘麻、苏丹草、反枝苋）混种处理,采用磷脂脂肪酸分析方法来研究不同植物对黄顶菊根际土壤微生物群落结构的影响,并结合土壤养分的变化探究不同植物对黄顶菊根际土壤生态的影响。[结果] 与黄顶菊单种相比,地肤和苘麻降低了黄顶菊根际微生物的总含量,改变了黄顶菊根际微生物群落结构。地肤、苘麻能竞争性抑制黄顶菊对铵态氮的吸收,从而抑制黄顶菊的生长。[结论] 不同植物的抵御能力与其土壤生态有关,替代植物通过改变黄顶菊根际土壤微生物,抑制黄顶菊对氮的吸收,从而抑制黄顶菊的生长,实现对黄顶菊的替代控制。     

Experimental study of the effect of hydrology and mechanical soil disturbance on plant communities in Mediterranean temporary pools in Western Morocco

Physical soil disturbance and the hydrology of temporary pools affect the biomass, species composition and richness of plant communities. Disturbance liberates sites for the random recruitment of new individuals. The addition of seeds modifies the structure of the communities. In order to verify these hypotheses concerning the vegetation of temporary pools, an experiment was carried out using 72 soil samples collected from a pool in Western Morocco and placed in containers. Three types of laboratory treatments were applied, each combined with control treatments: soil disturbance (control/disturbed), hydrology (flooded, saturated and dry) and seed addition (sowing/no sowing). The total biomass, the annual and perennial species richness were calculated for each sample to test the effects of disturbance, hydrology and seed addition on the biomass and species richness of the various plant communities. The results show that disturbance reduces the total biomass, especially of perennials, but without significantly increasing the richness of annuals. Seed addition does not affect the total biomass and reduces total richness only in saturated soil, where biomass production is high. The most extreme stress conditions (drought and flooding) limit the abundance of species and therefore competition. Guest editors: B. Oertli, R. Cereghino, A. Hull & R. Miracle Pond Conservation: From Science to Practice. 3rd Conference of the European Pond Conservation Network, Valencia, Spain, 14–16 May 2008