Re‐building brown trout populations in dredged boreal forest streams: in‐stream restoration combined with stocking of young trout

1. Rivers in boreal forested areas were often dredged to facilitate the transport of timber resulting in channels with simplified bed structure and flow fields and reduced habitat suitability for stream organisms, especially lotic fishes. Currently, many streams are being restored to improve their physical habitat, by replacing boulders and gravel and removing constraining embankments. The most compelling justification behind stream restoration of former floatways has been the enhancement of native fish populations, specifically salmonids. 2. We examined the success of a stream management programme aimed at re‐building diminished brown trout (Salmo trutta) populations by monitoring densities of young‐of‐year and older trout in 18 managed and three reference streams during 2000–2005. Rehabilitation included in‐stream restoration combined with a 5‐year post‐restoration period of stocking young brown trout. Our space‐for‐time substitution design comprised four pre‐management, four under‐management, 10 post‐management and three reference streams. 3. Densities of young‐of‐year brown trout, indicating population establishment, were significantly higher in post‐ compared with pre‐management streams. However, density of young‐of‐year brown trout in post‐management streams was significantly lower compared with near‐pristine reference streams. Furthermore, success of managed brown trout population re‐building varied, indicating stream‐specific responses to management measures. Density of burbot (Lota lota), a native generalist predator, was associated with low recruitment of brown trout. 4. Stream‐specific responses imply that rehabilitation of brown trout populations cannot be precisely predicted thereby limiting application. Our findings support the importance of adaptive stream restoration and management, with focus on identifying factor(s) limiting the establishment of target fish populations.     

Changes in habitat structure, benthic invertebrate diversity, trout populations and ecosystem processes in restored forest streams: a boreal perspective

1. Most Finnish streams were channelised during the 19th and 20th century to facilitate timber floating. By the late 1970s, extensive programmes were initiated to restore these degraded streams. The responses of fish populations to restoration have been little studied, however, and monitoring of other stream biota has been negligible. In this paper, we review results from a set of studies on the effects of stream restoration on habitat structure, brown trout populations, benthic macroinvertebrates and leaf retention. 2. In general, restoration greatly increased stream bed heterogeneity. The cover of mosses in channelised streams was close to that of unmodified reference sites, but after restoration moss cover declined to one‐tenth of the pre‐restoration value. 3. In one stream, densities of age‐0 trout were slightly lower after restoration, but the difference to an unmodified reference stream was non‐significant, indicating no effect of restoration. In another stream, trout density increased after restoration, indicating a weakly positive response. The overall weak response of trout to habitat manipulations probably relates to the fact that restoration did not increase the amount of pools, a key winter habitat for salmonids. 4. Benthic invertebrate community composition was more variable in streams restored 4–6 years before sampling than in unmodified reference streams or streams restored 8 years before sampling. Channelised streams supported a distinctive set of indicator species, most of which were filter‐feeders or scrapers, while most of the indicators in streams restored 8 years before sampling were shredders. 5. Leaf retentiveness in reference streams was high, with 60–70% of experimentally released leaves being retained within 50 m. Channelised streams were poorly retentive (c. 10% of leaves retained), and the increase in retention following restoration was modest (+14% on average). Aquatic mosses were a key retentive feature in both channelised and natural streams, but their cover was drastically reduced through restoration. 6. Mitigation of the detrimental impacts of forestry (e.g. removal of mature riparian forests) is a major challenge to the management of boreal streams. This goal cannot be achieved by focusing efforts only on restoration of physical structures in stream channels, but also requires conservation and ecologically sound management of riparian forests.     

Static habitat partitioning and dynamic selection by sympatric young Atlantic salmon and brown trout in south-west England streams

Direct underwater observation of micro‐habitat use by 1838 young Atlantic salmon Salmo salar [mean L_T 7·9 ± 3.1(s.d.) cm, range 3·19] and 1227 brown trout Salmo trutta (L_T 10·9 ± 5·0 cm, range 3·56) showed both species were selective in habitat use, with differences between species and fish size. Atlantic salmon and brown trout selected relatively narrow ranges for the two micro‐habitat variables snout water velocity and height above bottom, but with differences between size‐classes. The smaller fishes <7 cm held positions in slower water closer to the bottom. On a larger scale, the Atlantic salmon more often used shallower stream areas, compared with brown trout. The larger parr preferred the deeper stream areas. Atlantic salmon used higher and slightly more variable mean water velocities than brown trout. Substrata used by the two species were similar. Finer substrata, although variable, were selected at the snout position, and differences were pronounced between size‐classes. On a meso‐habitat scale, brown trout were more frequently observed in slow pool‐glide habitats, while young Atlantic salmon favoured the faster high‐gradient meso‐habitats. Small juveniles <7 cm of both species were observed most frequently in riffle‐chute habitats. Atlantic salmon and brown trout segregated with respect to use of habitat, but considerable niche overlap between species indicated competitive interactions. In particular, for small fishes <7 cm of the two species, there was almost complete niche overlap for use of water depth, while they segregated with respect to water velocity. Habitat suitability indices developed for both species for mean water velocity and water depth, tended to have their optimum at lower values compared with previous studies in larger streams, with Atlantic salmon parr in the small streams occupying the same habitat as favoured by brown trout in larger streams. The data indicate both species may be flexible in their habitat selection depending on habitat availability. Species‐specific habitat overlap between streams may be complete. However, between‐species habitat partitioning remains similar.     

Seasonal and spatial microhabitat selection and segregation in young Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., in a Norwegian river

Seasonal microhabitat selection by sympatric young Atlantic salmon and brown trout was studied by diving. Both species, especially Atlantic salmon, showed seasonal variation with respect to surface and mean water velocities and depth. This variation is partly attributed to varying water flows and water temperatures. In winter the fish sought shelter in the substratum. A spatial variation in habitat use along the river due to different habitat availabilities was observed. Both species occupied habitats within the ranges of the microhabitat variables, rather than selecting narrow optima. It is hypothesized that the genetic basis allows a certain range to the behavioural response. Microhabitat segregation between the two species was pronounced, with brown trout inhabiting the more slow-flowing and partly more shallow stream areas. Atlantic salmon tolerated a wider range of water velocities and depths. Habitat suitability curves were produced from both species. It is suggested that habitat suitability curves that are based on observations of fish occupancy of habitat at median or base flow may not be suitable in habitat simulation models, where available habitat is projected at substantially greater water flows.     

Influence of water quality, habitat and species richness on brown trout populations

The influence of water quality, physical habitat and species richness on the occurrence, density and size of brown trout at 216 stream sites in southern Sweden was studied. Discriminant analysis showed that the occurrence of trout at a locality was largely determined by oxygen conditions and medium-sized substrata. At localities where trout occurred, the density of + trout was highest in narrow streams with high oxygen concentrations. For older trout, >0+ in age, stream size and temperature were negatively related to density. Biotic factors also appeared to affect trout density, as trout density was inversely related to abundance of predators and coexisting species. Even intraspecific competition appeared to be important as length of 0+ trout was inversely related to trout density. It is suggested that improvements of water quality may be an effective way to restore sea trout populations in southern Sweden, especially in narrow streams where smolt production has the highest potential.     

Use of three types of stream-margin habitat by age-0 brown trout late in the growing season

The use of stream-margin habitat by age-0 salmonids has been studied, but differences in use among various types of habitat along stream margins has not been addressed. We described the nighttime use of habitat features by age-0 brown trout (Salmo trutta) among three types of stream-margin habitat late in the growing season (August–September) and assessed the extent to which use of habitat features within each type differed over the sampling period. Differences in water depths, water velocities, distances from shore, and substrate at the locations of fish along the margins of pools, the margins of riffles, and in backwaters were studied. Variation in habitat use also was observed during the study period as fish increased in length. Our observations are important considerations when developing habitat suitability criteria for assessment of instream-flow needs of age-0 brown trout.     

Comparing stream-specific to generalized temperature models to guide salmonid management in a changing climate

Global climate change is predicted to increase air and stream temperatures and alter thermal habitat suitability for growth and survival of coldwater fishes, including brook charr (Salvelinus fontinalis), brown trout (Salmo trutta), and rainbow trout (Oncorhynchus mykiss). In a changing climate, accurate stream temperature modeling is increasingly important for sustainable salmonid management throughout the world. However, finite resource availability (e.g. funding, personnel) drives a tradeoff between thermal model accuracy and efficiency (i.e. cost-effective applicability at management-relevant spatial extents). Using different projected climate change scenarios, we compared the accuracy and efficiency of stream-specific and generalized (i.e. region-specific) temperature models for coldwater salmonids within and outside the State of Michigan, USA, a region with long-term stream temperature data and productive coldwater fisheries. Projected stream temperature warming between 2016 and 2056 ranged from 0.1 to 3.8 °C in groundwater-dominated streams and 0.2–6.8 °C in surface-runoff dominated systems in the State of Michigan. Despite their generally lower accuracy in predicting exact stream temperatures, generalized models accurately projected salmonid thermal habitat suitability in 82% of groundwater-dominated streams, including those with brook charr (80% accuracy), brown trout (89% accuracy), and rainbow trout (75% accuracy). In contrast, generalized models predicted thermal habitat suitability in runoff-dominated streams with much lower accuracy (54%). These results suggest that, amidst climate change and constraints in resource availability, generalized models are appropriate to forecast thermal conditions in groundwater-dominated streams within and outside Michigan and inform regional-level salmonid management strategies that are practical for coldwater fisheries managers, policy makers, and the public. We recommend fisheries professionals reserve resource-intensive stream-specific models for runoff-dominated systems containing high-priority fisheries resources (e.g. trophy individuals, endangered species) that will be directly impacted by projected stream warming.     

Effects of predation, trout density and discharge on habitat use by brown trout, Salmo trutta, in artificial streams

1. The effects of predation risk, fish density and discharge on habitat use by juvenile brown trout, Salmo trutta, in four artificial streams were studied. Each stream contained three habitats, riffles, runs and pools, the latter two each being further divided into shallow margins and deeper mid-regions. 2. The presence of northern pike, Esox Indus, caused trout to decrease use of pool midregions, where pike also occurred, and to increase use of other habitats. Increasing the number of trout caused trout to increase use of pools and the shallow margins of runs. Decreasing discharge reduced the area of the run and pool margins covered by water, thereby reducing use of these areas by trout. 3. Habitat selection indices for the different treatments were calculated. The data indicated that riffles and the mid-regions of runs were preferred habitats, whereas run margins and pools were inferior habitats used when intraspecific fish densities were high. 4. Despite density- and discharge-dependent habitat use by trout, the number of trout consumed by pike was independent of trout density and discharge. 5. The results reveal the flexibility of habitat use by trout and illustrate the potential danger of applying data on habitat use in one stream to others where habitat availability and bioric interactions may differ.     

Application of clustering techniques for the characterization of macroinvertebrate communities to support river restoration management

The European Water Framework Directive prescribes that the development of a river assessment system should be based on an ecological typology taking the biological reference conditions of each river type as a starting point. Aside from this assessment, water managers responsible for river restoration actions also need to know the steering environmental factors to meet these reference conditions for biological communities in each ecological river type. As such, an ecological typology based on biological communities is a necessity for efficient river management. In this study, different clustering techniques including the Sørensen similarity ratio, ordination analysis and self-organizing maps were applied to come to an ecological classification of a river. For this purpose, a series of sites within the Zwalm river basin (Flanders, Belgium) were monitored. These river sites were then characterized in terms of biotic (macroinvertebrates), physical–chemical and habitat variables. The cluster analysis resulted in a series of characteristic biotic communities that are found under certain environmental conditions, natural as well as human-influenced. The use of multiple clustering techniques can be of advantage to draw more straightforward and robust conclusions with regard to the ecological classification of river sites. The application of the clustering techniques on the Zwalm river basin, allowed for distinguishing five mutually isolated clusters, characterized by their natural typology and their pollution status. On the basis of this study, one may conclude that river management could benefit from the use of clustering methods for the interpretation of large quantities of data. Furthermore, the clustering results might enable the development of a cenotypology useful for efficiently steering river restoration and enabling river managers to meet a good ecological status in most of the rivers as set by the European Water Framework Directive.     

Effects of Large Woody Debris Addition on Stream Habitat and Brook Trout Populations in Appalachian Streams

Large woody debris (LWD) was added to eight streams in the central Appalachians of West Virginia to determine if stream habitat could be enhanced and brook trout (Salvelinus fontinalis) populations increased. Brook trout populations were assessed one year prior to habitat manipulation and 3 years post-habitat manipulation. LWD was added by felling approximately 15 trees per 300 m stream reach. Four of the streams had LWD added to one 300 m reach with 300 m unmanipulated reaches upstream and downstream of the manipulated reach to observe within-stream effects of LWD additions on brook trout density. The remaining four streams had LWD added to three 300 m reaches and these streams were compared to those with only a single 300 m manipulated reach to observe the effects of the extent of habitat manipulation on brook trout density. New pools were formed by the addition of LWD, but overall pool area did not increase significantly in reaches where LWD was added. The relatively high gradient and coarse substrate of these streams may have precluded the added LWD from having a significant influence on stream channel morphology and habitat complexity. No pools were formed in the highest gradient stream, while the stream with the most pools formed had the lowest gradient. Brook trout populations fluctuated following habitat manipulations, and there was no overall effect of the LWD additions on within-stream variability in brook trout density. When there were significant differences among-streams with different extents of LWD additions, those streams receiving LWD additions over a large extent had the greatest brook trout densities. The full potential of added LWD to change stream habitat and influence on brook trout populations may take more time to develop than the 3 years post-manipulation period of this study.     

Habitat shifts in rainbow trout: competitive influences of brown trout

Summary We compared habitat use by rainbow trout sympatric (three streams) and allopatric (two streams) with brown trout to determine whether competition occurred between these two species in the southern Appalachian Mountains. We measured water depth, water velocity, substrate, distance to overhead vegetation, sunlight, and surface turbulence both where we collected trout and for the streams in general. This enabled us to separate the effects of habitat availability from possible competitive effects. The results provided strong evidence for asymmetrical interspecific competition. Habitat use varied significantly between allopatric and sympatric rainbow trout in 68% of the comparisons made. Portions of some differences refelected differences in habitats available in the several streams. However, for all habitat variables measured except sunlight, rainbow trout used their preferred habitats less in sympatry with brown trout than in allopatry if brown trout also preferred the same habitats. Multivariate analysis indicated that water velocity and its correlates (substrate particle size and surface turbulence) were the most critical habitat variables in the interaction between the species, cover in the form of shade and close overhead vegetation was second most important, and water depth was least important.     

Global warming threatens the persistence of Mediterranean brown trout

Current climate change exacerbates the environmental restrictions on temperate species inhabiting low latitude edges of their geographical ranges. We examined how temperature variations due to current and future climate change are likely to affect populations’ persistence of stream‐dwelling brown trout Salmo trutta at the vulnerable southern periphery of its range. Analysis of 33 years of air temperature data (1975–2007) by time‐series models indicated a significant upward trend and a pronounced shift in air temperature around 1986‐1987. This warming is associated with an ongoing population decline of brown trout, most likely caused by a loss of suitable thermal habitat in lower latitudes since the 1980s. Population decrease may not be attributed to physical habitat modification or angler pressure, as carrying capacity remained stable and populations were not overexploited. We developed regional temperature models, which predicted that unsuitable thermal habitat for brown trout increased by 93% when comparing climate conditions between 1975–1986 and 1993–2004. Predictions from climate envelope models showed that current climate change may be rendering unsuitable 12% of suitable thermal habitat each decade, resulting in an overall population decrease in the lower reaches of around 6% per year. Furthermore, brown trout catches markedly decreased 20% per year. Projections of thermal habitat loss under the ecologically friendly B2 SRES scenario showed that brown trout may lose half of their current suitable habitat within the study area by 2040 and become almost extinct by 2100. In parallel to the upstream movement of brown trout thermal habitat, warm water species are increasing their relative abundance in salmonid waters. Empirical evidence was provided of how current climate change threatens some of the most healthy native brown trout populations in Southern Europe and how forthcoming climate change is expected to further decrease the conservation status of the species.     

Landscape Determinants of Nonindigenous Fish Invasions

Much has been written about the influence of exotic or nonindigenous species on natural habitats and communities of organisms, but little is known of the physical or biological conditions that lead to successful invasion of native habitats and communities by exotics. We studied invasivity factors in headwater streams of the Susquehanna River West Branch, which drains portions of the northern Appalachian Plateau. A replicated (two major tributaries) 3 × 3 factorial design was used to determine landscape effects of size (stream order) and quality (land use) on abiotic (physical and chemical) and biotic (fish community structure and function) stream attributes. Seven (21%) of thirty-four fish species (brown trout, common carp, mimic shiner, bluegill, smallmouth bass, fantail darter, and banded darter) collected in the eighteen streams sampled were nonindigenous to the basin. Watershed size (stream orders 1, 3, and 5) significantly affected stream geomorphologic and habitat variables (gradient, width, depth, current velocity, diel water temperature, bank overhang, canopy cover, and woody debris density) but not water-quality variables, while land use in watersheds (conservation, mining, and agriculture) significantly affected measured water-quality variables (alkalinity and concentrations of manganese, calcium, chloride, nitrate, and total dissolved solids) but not stream physical or habitat quality. Both watershed size and land use affected fish-community variables such as presence of particular species, species density, species diversity, tolerance diversity, and mean fish size, but in both cases the effect was transparent to native-origin status of fish species. No relationships were found between occurrence of nonindigenous species in watersheds and trophic structure or functional diversity. Therefore, the hypothesis that reduced species diversity increases vulnerability to nonindigenous species was not supported. However, the spatial variation associated with both water-quality and habitat-quality factors was greater in streams with mixed (those with nonindigenous species) than with exclusively native assemblages. These findings suggest that the mechanism for successful invasion by nonindigenous or exotic species is through change in water or habitat quality associated with human or natural disturbances, such as agriculture and mining activities in watersheds. Biotic factors appear to play no or a lesser role in the invasibility of northern Appalachian lotic systems.     

Simple predictions of instream habitat model outputs for target fish populations

1. Bottom-up approaches based on individual behaviour can help to identify key variables influencing populations at larger scales. Instream habitat models have been developed to predict the consequences, for populations in stream reaches, of fish preferences for particular hydraulic conditions observed at the scale of individuals. Conventional instream habitat models (e.g. PHABSIM) predict habitat values for species or life stages in reaches, and their changes with discharge. Despite their worldwide use, they have been subject to continuing criticism and have been mainly limited to site-specific case studies.
2. We ran conventional instream habitat models in 58 French stream reaches dominated by brown trout. Using non-linear mixed effect models, we demonstrated that the outputs of instream habitat models (habitat values for three trout life stages and five other species) are predictable from average characteristics of reaches (discharge, depth, width and bed particle size).
3. Our models closely reflect variations in habitat values within-reaches (with discharge) and between-reaches. Within-reach changes are linked to the Reynolds number of reaches, while between-reach changes depend mainly on the Froude number at median daily discharge. These two dimensionless variables combine discharge, mean depth and mean width of reaches. Independent model validations showed robust model predictions that are consistent with studies of habitat values for brown trout made in larger streams from western North America.
4. Our results contribute to identifying the main hydraulic variables governing estimates of fish habitat values. They should facilitate habitat studies in multiple streams, at the basin or larger scales, while reducing their cost. They should enhance the biological validation of habitat model predictions, which remains critical.     

Competition between brown trout and Atlantic salmon parr over pool refuges during rapid dewatering

Variations in distributions and behaviours of Atlantic salmon Salmo salar in allopatry (homogeneous) and in sympatry with brown trout Salmo trutta (mixed) were observed before, during and after 2 day periods of dewatering in a large glass-sided indoor stream at densities typical of Scottish upland streams. Brown trout utilized pools more than Atlantic salmon at normal flows and in both species the majority of fishes moved into pools during dewatering. There was no significant effect of brown trout, which was the more dominant species, on the overall ability of Atlantic salmon to use pool habitat as a refuge during dewatering. Within mixed and homogeneous groups, average feeding levels decreased during dewatering. The highest ranking fish, which was always a brown trout in mixed groups, predominantly monopolized the pool and other individuals in pools adopted a more cryptic, stationary behaviour. Dewatering effectively increased local population density with the result that dominance status became much more important in maintaining food intake, and polarization between the top ranking fish and others increased. During the first day of dewatering, there was extreme behavioural polarization such that the dominant fish exhibited most aggression and least feeding within the group. Among dominant fish on the second day of dewatering, aggression had largely abated and feeding had returned to pretreatment levels despite the reduced average feeding within the group. The main difference between mixed and homogeneous groups was in the behaviour of the most dominant Atlantic salmon, which was near-despotic in allopatry and subordinate to brown trout in sympatry.     

Simulated Effects of Stream Restoration on the Distribution of Wet‐Meadow Vegetation

Meadow restoration efforts typically involve the modification of stream channels to re‐establish hydrologic conditions necessary for the maintenance of native vegetation. To predict change in the distribution of common meadow plant species in response to meadow restoration, a hydrologic model was loosely coupled to a suite of individual plant species distribution models. The approach was tested on a well‐documented meadow/stream restoration project on Bear Creek, a tributary to the Fall River in northeastern California, U.S.A. We developed a surface‐water and groundwater hydrologic model for the meadow. Vegetation presence and absence data from 170 plots were combined with simulated water‐table depth time series to develop habitat‐suitability models for 11 herbaceous plant species. In each model, the habitat suitability is predicted as a function of growing‐season, water‐table depth, and range. The hydrologic model was used to simulate water‐table depth time series for the pre‐ and post‐restoration conditions. These results were used to predict the spatial distribution of habitat suitability for the 11 herbaceous plant species. Model results indicate that restoration changed water levels throughout the study area, extending well beyond the near‐stream region. Model results also indicate an increase in the spatial distribution of suitable habitat for mesic vegetation and a concomitant decrease in the spatial distribution of suitable habitat for xeric vegetation. The methods utilized in this study could be used to improve setting of objective and performance measures in restoration projects in similar environments, in addition to providing a quantitative, science‐based approach to guide riparian restoration and active revegetation efforts.     

Overview and quantification of the factors affecting the upstream and downstream movements of Gammarus pulex (Amphipoda)

Human activities have severely deteriorated the Flemish river systems, and many functions such as drinking water supply, fishing, ... are threatened. Because their restoration entails drastic social (e.g. change in habits with regard to water use and discharge, urban planning) and economical (e.g. investment in nature restoration, wastewater treatment system installation) consequences, the decisions should be taken with enough forethought. Ecosystem models can act as interesting tools to support decision-making in river restoration management. In particular models that can predict the habitat requirements of organisms are of considerable importance to ensure that the planned actions have the desired effects on the aquatic ecosystems. In preliminary studies, Artificial Neural Network (ANN) models were tested and optimized to obtain the best model configuration for the prediction of the habitat suitability for Gammarus pulex based on the abiotic characteristics of their aquatic environment in the Zwalm river basin (Flanders, Belgium). Although, these ANN models are in general quite robust with a rather high predictive reliability, the model performance has to be increased with regard to simulations for river restoration management. In particular, spatial-temporal expert-rules have to be included. Migration kinetics (downstream drift and upstream migration) of the organism and migration barriers along the river (weirs, impounded river sections, ...) can deliver important additional information on the effectiveness of the restoration plans, and also on the timing of the expected effects. This paper presents an overview and quantification of the factors affecting the upstream and downstream movements of Gammarus pulex. During further research, ANN models will be used to predict the habitat suitability for Gammarus pulex after several restoration options. The migration models, implemented in a Geographical Information System (GIS), are applied to calculate the migration time to the restored parts of the river. In this way, decision makers have an idea whether and when a selected restoration option has the desired effect.     

Differences in brain morphology of brown trout across stream,lake, and hatchery environments

It has been suggested that a trade‐off between cognitive capacity and developmental costs may drive brain size and morphology across fish species, but this pattern is less well explored at the intraspecific level. Physical habitat complexity has been proposed as a key selection pressure on cognitive capacity that shapes brain morphology of fishes. In this study, we compared brain morphology of brown trout, Salmo trutta, from stream, lake, and hatchery environments, which generally differ in physical complexity ranging from low habitat complexity in the hatchery to high habitat complexity in streams and intermediate complexity in lakes. We found that brain size, and the size of optic tectum and telencephalon differed across the three habitats, both being largest in lake fish with a tendency to be smaller in the stream compared to hatchery fish. Therefore, our findings do not support the hypothesis that in brown trout the volume of brain and its regions important for navigation and decision‐making increases in physically complex habitats. We suggest that the observed differences in brain size might be associated with diet quality and habitat‐specific behavioral adaptations rather than physical habitat complexity.     

Conflicting effects of woody debris on stream fish populations: implications for management

1. Coarse woody debris (CWD) in stream channels causes changes in flow, sedimentation and ratios of pool to riffle areas. There is a consensus among fishery managers and scientists that CWD is beneficial to stream fish communities because of its enhancement of habitat diversity, invertebrate production and cover. Our hypothesis was that CWD accumulation or introduction would not increase in‐stream habitat capacity for all species and their ontogenic stages at reach and stream scales. 2. The study used a system of gravel‐bed streams with naturally dynamic CWD accumulations and a fish community consisting of Salmo trutta, Cotttus gobio, Phoxinus phoxinus, Lampetra cf planeri, Nemacheilus barbatulus and Anguilla anguilla. Cotttus gobio and L. cf planeri are protected by an EU Directive and S. trutta is exploited for angling. Riffles, pools and CWD matrices, considered as the basic habitat/spatial units of channel structure, were sampled separately and abundance of each fish species quantified seasonally at each spatial scale. 3. Multiple‐pass electric fishing techniques were used. Capture efficiencies were calculated for species, habitat and season. Areal densities (number m^?2) were compared for habitat types and season using nonparametric anova . Canonical analysis and stepwise multiple regression were used to show the most influential physical variables on fish density. Densities were also compared by unit volume (numbers m^?3) for pools and CWD matrices to investigate direct three‐dimensional use for cover. Reach‐scale densities for each fish species in relation to habitat composition were made using Spearman rank correlation of habitat‐scale densities with proportionate areas of the different habitat units in the reach. 4. Habitat‐scale densities of bullheads and age 0+ trout were negatively correlated with depth and CWD areas for some seasons. Densities of lampreys, older trout, eels and minnows were positively correlated with depth in some seasons. Water depth had the most consistent influence on fish abundance at the habitat unit scale. Three‐dimensional comparisons of pools and CWD matrices indicated that only trout older than 1+ may use CWD habitats as cover. 5. Reach‐scale densities of 0+ trout and bullheads were significantly correlated with proportion of riffle area and negatively with CWD and combined CWD‐pool habitat area in the reach. Densities of older trout, large eels and lampreys were positively correlated with CWD area and combined CWD‐pool area in some seasons. Inundation of riffles caused by impoundment upstream of CWD accumulations reduced spawning habitat for trout, bullheads, brook lampreys, minnows and stone loach. A trade‐off was an increase in refugia for older trout, minnows and eels. 6. Coarse woody debris accumulation in streams is not beneficial to all species or ontogenic stages in a mixed species population and could severely limit essential habitat areas for some species. Thus, physical manipulation of channels should be implemented only after a thorough study of the habitat relationships of all species present, especially where protected species coexist with target species. The relative importance of in‐stream morphological changes depends on the spatial and temporal scale of the species life histories.     

Assessing fish metrics and biotic indices in a Mediterranean stream: effects of uncertain native status of fish

Implementation of the Water Framework Directive requires tools for measuring and monitoring the ecological status of aquatic ecosystems. Several indices are in use in the Iberian Peninsula, although there has been little comparison among them. We sampled the fish assemblage and limnological features of the Tordera stream (NE Spain) quarterly from September 2001 to May 2003 to evaluate the usefulness of several fish metrics and to compare habitat quality and biotic indices currently in use. Data for eight biotic and abiotic indices for this and three other Catalan river basins were also compiled in order to analyse the relationships among indices. In the Tordera stream, fish abundance and richness increased with stream order except in the last sampling site that had the lowest fish abundance owing to the effects of drought and water abstraction. Although most indices were positively correlated, some displayed low or null correlations particularly for the Tordera basin which is more affected by water abstraction and less by pollution; a commonly used physico-chemical index (ISQA) was the least correlated. In a regional fish index (IBICAT) under development, the brown trout (Salmo trutta) has been previously considered as introduced in the Tordera basin. Here, we report an old published record that demonstrates that trout was present before 1845 and we argue that its status should be considered as uncertain given the current information available. Whether brown trout is treated as native or introduced to this river basin has profound effects on the results of fish metrics because of its dominance in the upper reaches. We briefly discuss the role of introduced species, particularly in headwater streams, in the development of fish indices. Our study exemplifies the need for careful, basin-specific assessment of native/introduced status in the development of fish metrics. Handling editor: K. Martens