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1.
Frank A. La Sorte Christopher A. Lepczyk Myla F. J. Aronson Mark A. Goddard Marcus Hedblom Madhusudan Katti Ian MacGregor‐Fors Ulla Mörtberg Charles H. Nilon Paige S. Warren Nicholas S. G. Williams Jun Yang 《Diversity & distributions》2018,24(7):928-938
Aim
Urbanization broadly affects the phylogenetic and functional diversity of natural communities through a variety of processes including habitat loss and the introduction of non‐native species. Due to the challenge of acquiring direct measurements, these effects have been studied primarily using “space‐for‐time” substitution where spatial urbanization gradients are used to infer the consequences of urbanization occurring across time. The ability of alternative sampling designs to replicate the findings derived using space‐for‐time substitution has not been tested.Location
Global.Methods
We contrasted the phylogenetic and functional diversity of breeding bird assemblages in 58 cities worldwide with the corresponding regional breeding bird assemblages estimated using geographic range maps.Results
Compared to regional assemblages, urban assemblages contained lower phylogenetic diversity, lower phylogenetic beta diversity, a reduction in the least evolutionary distinct species and the loss of the most evolutionarily distinct species. We found no evidence that these effects were related to the presence of non‐native species. Urban assemblages contained fewer aquatic species and fewer aquatic foraging species. The distribution of body size and range size narrowed for urban assemblages with the loss of species at both tails of the distribution, especially large bodied and broadly distributed species. Urban assemblages contained a greater proportion of species classified as passerines, doves or pigeons; species identified as granivores; species that forage within vegetation or in the air; and species with more generalized associations with foraging strata.Main conclusions
Urbanization is associated with the overall reduction and constriction of phylogenetic and functional diversity, results that largely replicate those generated using space‐for‐time substitution, increasing our confidence in the quality of the combined inferences. When direct measurements are unavailable, our findings emphasize the value of developing independent sampling methods that broaden and reinforce our understanding of the ecological implications of urbanization.2.
A key challenge in ecological research is to integrate data from different scales to evaluate the ecological and evolutionary mechanisms that influence current patterns of biological diversity. We build on recent attempts to incorporate phylogenetic information into traditional diversity analyses and on existing research on beta diversity and phylogenetic community ecology. Phylogenetic beta diversity (phylobetadiversity) measures the phylogenetic distance among communities and as such allows us to connect local processes, such as biotic interactions and environmental filtering, with more regional processes including trait evolution and speciation. When combined with traditional measures of beta diversity, environmental gradient analyses or ecological niche modelling, phylobetadiversity can provide significant and novel insights into the mechanisms underlying current patterns of biological diversity. 相似文献
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This study attempts to understand the biogeographic history of the Western Ghats forests by investigating decoupling between phylogenetic and taxonomic diversity. We specifically test whether the deciduous forests have been recently established, whether the southern region was a refuge, and whether the deciduous and evergreen forest species have disparate evolutionary histories. We used species composition data from 23 forest types along the Western Ghats for all woody angiosperms above 10‐cm diameter at breast height. Forests were broadly grouped as either evergreen or deciduous. Mean phylogenetic distances corrected for species richness and mean phylogenetic beta diversity corrected for shared species were assessed using z‐scores from null distributions. Null distributions were generated by randomizing the species relationships on the phylogeny. We found that all evergreen forests showed a greater phylogenetic diversity as compared with null expectations. Deciduous forests showed the inverse pattern. Within the evergreen belt, there was a decreasing phylogenetic diversity from south to north, as predicted by the southern refuge hypothesis. The phylogenetic beta diversity across evergreen–deciduous forests was lesser than the null expectation, whereas it was much higher across forests within the evergreen belt. This study provides the first phylogenetic evidence for the antiquity of evergreen forests as well as the southern refuge hypothesis in the Western Ghats. The deciduous forests species have shared evolutionary histories with the evergreen forest species, suggesting multiple shifts between evergreen and deciduous states through the lineages. Conversely, the evergreen species exhibited a disparate evolutionary history across these forests, possibly owing to sharper ecological or climatic gradients. 相似文献
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Ran Zhang Zhaochen Zhang Kankan Shang Mingshui Zhao Jiaxin Kong Xin Wang Yuzhuo Wang Houjuan Song Oukai Zhang Xuan Lv Jian Zhang 《Journal of Plant Ecology》2021,14(4):702
亚热带森林植物群落沿海拔梯度的分类与系统发育研究生物多样性沿海拔梯度的分布格局已受到广泛关注。然而,生物多样性格局沿海拔梯度的变异及其潜在机制尚不清楚。整合生物多样性的多维度信息为理解群落构建机制提供了新思路。本研究在我国东部亚热带森林沿海拔270–1470 m的梯度上设置了17个木本植物固定样地,分析了沿海拔梯度植物群落 构建的生态和进化驱动力。基于样地内物种出现(0–1数据)和多度信息,计算群落内被子植物的物种和系统发育alpha和beta多样性、系统发育结构等,并量化多样性指标与微气候和地形之间的关系。研究发现,不论多度加权与否,物种alpha多样性均沿海拔升高而增加,物种和系统发育的相似性随海拔距离的增加而呈衰减趋势。然而,多度加权与否会形成不同的系统发育alpha多样性格局。对于系统发育结构而言,沿海拔增加并无明显趋势。地形和微气候是多样性格局和系统发育结构的主要驱动力。与未考虑物种多度的多样性指标相比,多度加权的指标与坡度和胸高断面积相关性更高。这些结果表明,由局域物种多度介导的确定性过程对沿海拔梯度的植物群落构建具有一定影响。 相似文献
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Erivelton Rosário do Nascimento Isadora Correia Juan Manuel Ruiz‐Esparza Sidney F. Gouveia 《Oikos》2018,127(8):1177-1185
Understanding the factors driving assembling structure of ecological communities remains a fundamental problem in ecology, especially when focusing on ecological and evolutionary relatedness among species rather than on their taxonomic identity. It remains critical though to separate the patterns and drivers of phylogenetic and functional structures, because traits are phylogenetically constrained, but phylogeny alone does not fully reflect trait variability among species. Using birds from the Brazilian dry forest as a study case, we employed two different approaches to decompose functional structure into its components that are shared and non‐shared with the phylogenetic structure. We investigated the spatial pattern and environmental hypotheses for these phylogenetically constrained and unconstrained aspects of functional structure, including climate‐induced physiological constraints, historical climatic stability, resource availability and habitat partitioning. We found only partial congruence between the two methods of structure decomposition. Still, we found a differential effect of factors on specific components of functional structure of bird assemblages. While climate affects phylogenetically constrained traits through endurance, habitat partitioning (especially forest cover) affects the functional structure that is independent of phylogeny. With this strategy, we were able to decompose the patterns and drivers of the functional structure of birds along a semiarid gradient and showed that the decomposition of the functional structure into its phylogenetic and non‐phylogenetic counterparts can offer a more complete portrait of the assembling rules in ecological communities. We claim for a further development and use of this sort of strategy to investigate assembling rules in ecological communities. 相似文献
6.
Testing how local environmental conditions influence plant community assembly is important to understand the underlying mechanisms that promote and/or maintain biodiversity. Functional traits are used to find the broad spectrum of resource use strategies that plants use to respond to environmental variation. The patterns and drivers of plant community assembly through the lens of traits and phylogeny; however, remain to be studied in a uniquely biodiversity rich but poorly known fragmented dry Afromontane forest of Ethiopia. Here, we combined trait and community phylogenetic data from thirty sampling plots of 20 × 20 m size to determine the functional and phylogenetic structures and their drivers in a fragmented, human-dominated dry evergreen Afromontane forest. We found phylogenetic and functional clustering of plants in which the effect of environment was found to be trait specific. A weak phylogenetic signal for traits was detected suggesting that species resource use strategies may not be inferred using species phylogenetic distance. Additionally, we found functional traits to be weak in predicting species abundance distribution. Overall, while this study shows a non-random community assembly pattern, it also highlights the importance of deterministic processes being trait specific. 相似文献
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Mengesha Asefa Calum Brown Min Cao Guocheng Zhang Xiuqin Ci Liqing Sha Jie Li Luxiang Lin Jie Yang 《Journal of Plant Ecology》2019,12(2):314
AimsThe evolutionary history and functional traits of species can illuminate ecological processes supporting coexistence in diverse forest communities. However, little has been done in decoupling the relative importance of these mechanisms on the turnover of phylogenetic and functional characteristics across life stages and spatial scales. Therefore, this study aims to estimate the contribution of environment and dispersal on the turnover of phylogenetic and functional diversity across life stages and spatial scales, in order to build a coherent picture of the processes responsible for species coexistence. 相似文献
9.
Ting‐Wen Chen Philipp Sandmann Ina Schaefer Stefan Scheu 《Ecology and evolution》2017,7(22):9624-9638
Functional traits determine the occurrence of species along environmental gradients and their coexistence with other species. Understanding how traits evolved among coexisting species helps to infer community assembly processes. We propose fatty acid composition in consumer tissue as a functional trait related to both food resources and physiological functions of species. We measured phylogenetic signal in fatty acid profiles of 13 field‐sampled Collembola (springtail) species and then combined the data with published fatty acid profiles of another 24 species. Collembola fatty acid profiles generally showed phylogenetic signal, with related species resembling each other. Long‐chain polyunsaturated fatty acids, related to physiological functions, demonstrated phylogenetic signal. In contrast, most food resource biomarker fatty acids and the ratios between bacterial, fungal, and plant biomarker fatty acids exhibited no phylogenetic signal. Presumably, fatty acids related to physiological functions have been constrained during Collembola evolutionary history: Species with close phylogenetic affinity experienced similar environments during divergence, while niche partitioning in food resources among closely related species favored species coexistence. Measuring phylogenetic signal in ecologically relevant traits of coexisting species provides an evolutionary perspective to contemporary assembly processes of ecological communities. Integrating phylogenetic comparative methods with community phylogenetic and trait‐based approaches may compensate for the limitations of each method when used alone and improve understanding of processes driving and maintaining assembly patterns. 相似文献
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达尔文的归化假说提出,由于生态位的不同,成功建群的外来物种与本地物种的关系不太密切。先前的研究对这一假设有支持也有反对,其中一个原因是外来物种和本地物种在大的空间尺度上有系统发育聚类的倾向,而在细微尺度上存在过度分散的倾向。然而,对于外来物种的系统发育关系如何改变其入侵群落的系统发育结构,以及在何种空间尺度上可能表现出这种影响,人们知之甚少。在本研究中,我们调查被入侵的森林下层植物群落在系统发育上是聚集的还是或过度分散的,亲缘关系如何随空间尺度变化,以及外来物种如何影响下层群落的系统发育模式。在澳大利亚东南部干旱森林的下层群落进行了5个空间尺度(1, 20, 500, 1500和4500 m2)的实地调查。使用两个指标的标准化效应量[(i)平均成对距离和(ii)平均最近分类单元距离]来量化群落与其外来和本地亚群落之间的系统发育关系,并研究系统发育模 式如何随空间尺度变化。研究结果表明,外来物种之间的亲缘关系非常密切,而且这种亲缘关系会随着尺度的增加而增加。在中等空间尺 度下(20–500 m2), 整个群落呈随机分布趋势,而本地物种高度分散,外来亚群落高度聚集。这说明亲缘关系密切的外来物种入侵使群落系统发育结构由过度分散向随机分布转变。外来物种和本地物种在空间尺度上是远亲,这支持了达尔文的归化假说,但只是在系统发育距离被量化为平均最近分类单元距离时成立。外来物种和本地物种的系统发育差异随着空间尺度的增加而增加,这与预期的模式相反。我们的研究结果表明,外来物种强大的系统发育聚类是由人类干预的引入驱动的,牵涉能够成功建群和传播的密切相关的类群。系统发育相关性的尺度依赖模式可能是由火灾和散布等随机过程引起的,这表明竞争和生境过滤并不是分别在小和大尺度上控制系统发育关系的唯一因素。区分不同进化深度的指标很重要,因为不同的指标可以显示不同的尺度依赖模式。 相似文献
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Cesc Múrria Gabone Iturrarte Cayetano Gutirrez‐Cnovas 《Global Ecology and Biogeography》2020,29(10):1729-1742
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生物多样性是生态学的核心问题。传统的多样性指数仅包含物种数和相对多度的信息,这类基于分类学的多样性指数并不能很好地帮助理解群落构建和生态系统功能。不同物种对群落构建和生态系统功能所起到的作用类型和贡献也不完全相同,且物种在生态过程中的作用和贡献往往与性状密切相关,因此功能多样性已经成为反映物种群落构建、干扰以及环境因素对群落影响的重要指标。同时,由于亲缘关系相近的物种往往具有相似的性状,系统发育多样性也可以作为功能多样性的一个替代。功能多样性和系统发育多样性各自具有优缺点,但二者均比分类多样性更能揭示群落和生态系统的构建、维持与功能。 相似文献
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Lu Jin Jia-Jia Liu Tian-Wen Xiao Qiao-Ming Li Lu-Xiang Lin Xiao-Na Shao Chen-Xin Ma Bu-Hang Li Xiang-Cheng Mi Hai-Bao Ren Xiu-Juan Qiao Ju-Yu Lian Gang Hao Xue-Jun Ge 《Molecular ecology resources》2022,22(1):319-333
Phylogenetic trees have been extensively used in community ecology. However, how the phylogeny construction affects ecological inferences is poorly understood. In this study, we constructed three different types of phylogenetic trees (a synthetic-tree generated using V.PhyloMaker, a barcode-tree generated using rbcL+matK+trnH-psbA, and a plastome-tree generated from plastid genomes) that represented an increasing level of phylogenetic resolution among 580 woody plant species from six forest dynamic plots in subtropical evergreen broadleaved forests of China. We then evaluated the performance of each phylogeny in estimations of community phylogenetic structure, turnover and phylogenetic signal in functional traits. As expected, the plastome-tree was most resolved and most supported for relationships among species. For local phylogenetic structure, the three trees showed consistent results with Faith's PD and MPD; however, only the synthetic-tree produced significant clustering patterns using MNTD for some plots. For phylogenetic turnover, contrasting results between the molecular trees and the synthetic-tree occurred only with nearest neighbor distance. The barcode-tree agreed more with the plastome-tree than the synthetic-tree for both phylogenetic structure and turnover. For functional traits, both the barcode-tree and plastome-tree detected phylogenetic signal in maximum height, but only the plastome-tree detected signal in leaf width. This is the first study that uses plastid genomes in large-scale community phylogenetics. Our results highlight the improvement of plastome-trees over barcode-trees and synthetic-trees for the analyses studied here. Our results also point to the possibility of type I and II errors in estimation of phylogenetic structure and turnover and detection of phylogenetic signal when using synthetic-trees. 相似文献
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Jun Wang Jiancheng Hu Tao Tang Jani Heino Xiaoming Jiang Zhengfei Li Zhicai Xie 《Ecology and evolution》2020,10(2):692-704
Identifying seasonal shifts in community assembly for multiple biological groups is important to help enhance our understanding of their ecological dynamics. However, such knowledge on lotic assemblages is still limited. In this study, we used biological traits and functional diversity indices in association with null model analyses to detect seasonal shifts in the community assembly mechanisms of lotic macroinvertebrates and diatoms in an unregulated subtropical river in China. We found that functional composition and functional diversity (FRic, FEve, FDis, MNN, and SDNN) showed seasonal variation for macroinvertebrate and diatom assemblages. Null models suggested that environmental filtering, competitive exclusion, and neutral process were all important community assembly mechanisms for both biological groups. However, environmental filtering had a stronger effect on spring macroinvertebrate assemblages than autumn assemblages, but the effect on diatom assemblages was the same in both seasons. Moreover, macroinvertebrate and diatom assemblages were shaped by different environmental factors. Macroinvertebrates were filtered mainly by substrate types, velocity, and CODMn, while diatoms were mainly shaped by altitude, substrate types, and water quality. Therefore, our study showed (a) that different biological assemblages in a river system presented similarities and differences in community assembly mechanisms, (b) that multiple processes play important roles in maintaining benthic community structure, and (c) that these patterns and underlying mechanisms are seasonally variable. Thus, we highlight the importance of exploring the community assembly mechanisms of multiple biological groups, especially in different seasons, as this is crucial to improve the understanding of river community changes and their responses to environmental degradation. 相似文献
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Jason M. Kamilar 《American journal of physical anthropology》2009,139(3):382-393
Previous research has shown that both environmental and historical factors influence the taxonomic structure of animal communities; yet, the relative importance of these effects is not known for primates. Environmental characteristics shape the possible niches in a community, providing suitable habitats for some species and not others. Therefore, communities found in similar environments should display similar species compositions. Additionally, geography may be viewed as a surrogate for historical processes. For instance, as the geographic distance between communities increases, dispersal between sites is more limited, and the probability of historical vicariance increases. Therefore, communities in close proximity to each other should exhibit similar species compositions. The geographic location, environmental characteristics, and species composition of 168 primate communities were gathered from the literature. Canonical correspondence analyses were conducted to examine the relative effects of geographic distance and environmental variables on the taxonomic structure of communities. In addition, UPGMA cluster analyses were conducted to better visualize the taxonomic similarity of communities. Spatial variables were significant predictors of community structure in all regions. Rainfall patterns explained African, Malagasy, and Neotropical community structure. In addition, maximum temperature was also correlated with community structure in Madagascar and the Neotropics. No climatic variables predicted Asian community structure. These results demonstrate that both historical and environmental factors play a significant role in structuring modern primate communities; yet, the importance of environmental factors depend on the region in question. Am J Phys Anthropol, 2009. © 2008 Wiley‐Liss, Inc. 相似文献