Digitized photographs in vegetation analysis ‐ a comparison of cover estimates

Abstract. The use of digital images in measuring plant species cover and species number in boreal forest vegetation was studied. Plant cover was estimated by manual delineation on photographs and subsequent digitized measurement of the areas. This value was regarded as the reference and compared with cover obtained by visual estimate, point frequency and automatic image analysis methods. The automatic image analysis was based on scanned photographs. Supervised image classification with ERDAS software was then used to distinguish between the covers of different plant species. When comparing the ability of the methods to detect species, the visual estimate method gave values similar to the reference. The study material was collected from three sites along a heavy‐metal pollution transect in western Finland. All four methods detected, in a similar manner, differences between the plant species abundances along the transect. Compared with the reference, the digital images underestimated the cover of the lichens Cladina spp. and Cetraria islandica, but gave similar estimates for the dwarf shrubs Empetrum nigrum and Vaccinium vitis‐idaea. The point frequency method overestimated the cover of all the species studied. The visual estimates of lichens were close to the reference, while the dwarf shrub covers were overestimated. The number of species detected using supervised image analysis and the point frequency method was lower than that with visual estimation. Visual estimation was faster, and the estimate closer to the reference cover values than the others. Digital images may be useful in detecting changes in some selected species in vegetation with a simple vertical structure but with taller, multilayered vegetation and a higher species number, the reliability of the cover estimates is lower.     

Vegetal cover estimated by digital photographs related to biomass in a grassland site in northern Mexico

A regression model was used to determine the relationship between aerial herbaceous biomass and vegetation coverage estimated by digital images. Four samplings (n=36 each date) of vegetation cover and herbaceous biomass were performed during the growing season in 2011 in a grassland dominated by Bouteloua gracilis in La Cieneguilla, Municipality of Villa Hidalgo, Durango. Average production of dry biomass was 37.36 ± 9.66 g/m², and mean vegetation cover 30.02%. Dry biomass data were tested for normality using the test of Kolmogorov Smirnov, finding a lack of fit. The data were subjected to a logarithmic transformation and the model Ln(y) = 1.637926 + 0.08501X - 0.000586X² with an adjusted R² = 0.89 was found. In order to validate this model, another five samplings were carried out in 2013 at the same site during summer and autumn, using the same sampling size for each date as in 2011. Data collected in 2013 were analyzed with the model Ln (y) = β₀ + β₁X + β₂X². A comparison of regression coefficients was carried out between the 2011 and 2013 models with t (180+144-9-11-2=302, p<0.05) = 1.967. The results indicated that it is possible to use the 2011 regression model to estimate herbaceous aerial biomass from vegetation cover measurements with aerial photographs in La Cieneguilla site during summer and fall.     

Spatial analysis of oblique photo‐point images for quantifying spatio‐temporal changes in plant communities

Question: Can spatial analytical techniques be used to extract quantitative measurements of vegetation communities from ground‐based permanent photo‐point images? Location: Mount Aspiring National Park, south‐western South Island, New Zealand. Methods: Sets of ground‐based photographs representing two contrasting vegetation types were selected to test two spatial analytical techniques. In the grid technique, a grid was superimposed onto the photographs and the frequency of species presence in each grid‐square was calculated to estimate species abundance/cover over the defined area. In the object‐oriented technique, the photographs were segmented into meaningful objects, based on the colour of the pixels and the textural patterns of the images, and the area occupied by an object in the image was used to derive species abundance/cover over the area. Results: Both techniques allow quick and easy classification of digital elements into ecologically relevant categories of vegetation components. The grid technique appeared more robust, being quick and efficient, accommodating all image types and providing presence/absence matrices for multivariate analysis. Fewer classes were identified using the object‐oriented technique, in particular for the forest interior site and for small individual plants such as Astelia spp. Conclusions: Both techniques showed potential for the objective quantitative analysis of long‐term vegetation monitoring of cover and changes of several component species, using repeat ground‐based photographs more specifically for grassland habitats. However, both rely to various degrees on manual classification. Corrective factors and strict protocols for taking the photographs are necessary to account for variation in view angles and to compute values more representative of absolute species abundance.     

A Comparison of Remote Sensing and Ground-Based Methods for Monitoring Wetland Restoration Success

Abstract Efficient and accurate vegetation sampling techniques are essential for the assessment of wetland restoration success. Remotely acquired data, used extensively in many locations, have not been widely used to monitor restored wetlands. We compared three different vegetation sampling techniques to determine the accuracy associated with each method when used to determine species composition and cover in restored Pacific coast wetlands dominated by Salicornia virginica (perennial pickleweed). Two ground‐based techniques, using quadrat and line intercept sampling, and a remote sensing technique, using low altitude, high resolution, color and color infrared photographs, were applied to estimate cover in three small restoration sites. The remote technique provided an accurate and efficient means of sampling vegetation cover, but individual species could not be identified, precluding estimates of species density and distribution. Aerial photography was determined to be an effective tool for vegetation monitoring of simple (i.e., single‐species) habitat types or when species identities are not important (e.g., when vegetation is developing on a new restoration site). The efficiency associated with these vegetation sampling techniques was dependent on the scale of the assessment, with aerial photography more efficient than ground‐based sampling methods for assessing large areas. However, the inability of aerial photography to identify individual species, especially mixed‐species stands common in southern California salt marshes, limits its usefulness for monitoring restoration success. A combination of aerial photography and ground‐based methods may be the most effective means of monitoring the success of large wetland restoration projects.     

Near‐ground solar radiation along the grassland–forest continuum: Tall‐tree canopy architecture imposes only muted trends and heterogeneity

Solar radiation directly and indirectly drives a variety of ecosystem processes. Our aim was to evaluate how tree canopy architecture affects near‐ground, incoming solar radiation along gradients of increasing tree cover, referred to as the grassland–forest continuum. We evaluated a common type of canopy architecture: tall trees that generally have their lowest level of foliage high above, rather than close to the ground as is often the case for shorter trees. We used hemispherical photographs to estimate near‐ground solar radiation using the metric of Direct Site Factor (DSF) on four sites in north Queensland, Australia that formed a grassland–forest continuum with tree canopy cover ranging from 0% to 71%. Three of the four sites had tall Eucalyptus trees with foliage several metres above the ground. We found that: (i) mean DSF exceeded >70% of the potential maximum for all sites, including the site with highest canopy cover; (ii) DSF variance was not highly sensitive to canopy coverage; and (iii) mean DSF for canopy locations beneath trees was not significantly lower than for adjacent intercanopy locations. Simulations that hypothetically placed Australian sites with tall tree canopies at other latitude–longitude locations demonstrated that differences in DSF were mostly due to canopy architecture, not specific site location effects. Our findings suggest that tall trees that have their lowest foliage many metres above the ground and have lower foliar density only weakly affect patterns of near‐ground solar radiation along the grassland–forest continuum. This markedly contrasts with the strong effect that shorter trees with foliage near the ground have on near‐ground solar radiation patterns along the continuum. This consequence of differential tree canopy architecture will fundamentally affect other ecosystem properties and may explain differential emphases that have been placed on canopy–intercanopy heterogeneity in diverse global ecosystem types that lie within the grassland–forest continuum.     

Feral horses dung piles as potential invasion windows for alien plant species in natural grasslands

Small scale disturbances could act as patches that provide sites for the colonization of competitively inferior species, promoting the establishment of non-native species in some cases. We analyzed the vegetation associated with feral horse dung piles in montane pampas grasslands in Mid-East Argentina and described the changes following their abandonment, evaluating whether dung piles act as invasion windows, allowing the entrance of alien plant species. We estimated the portion of the study area directly covered by horse manure and dung height was used to estimate the time elapsed after the abandonment of each pile. Vegetation replacement on dung piles of different ages was assessed and compared with grassland controls using discriminant analysis. We used regression analysis to look for changes in vegetation cover, species richness, species diversity and evenness in response to height (age) of the dung piles, and principal component analyses (PCA) to identify groups of plants associated with different successional stages. We compared cover of alien plant species on dung piles with grassland controls using one-way ANOVA. On average, 2.5% of the study area was covered by horse dung. Total vegetation cover, species richness, diversity and evenness increased after the piles were abandoned. Characteristic plant groups were associated with initial, middle and last phases of the studied succession. Vegetation on the dung piles significantly differed from that in grassland controls and two species were consistently associated with dung piles: the invasive Red Star Thistle, Centaurea calcitrapa, and a native grazing-intolerant grass, Nassella clarazii. Non-native species cover was also higher in dung piles than in control plots. Dung piles cover a significant portion of grassland area in our study site, produce significant changes in the vegetation and are associated with some invasive alien plants that could eventually colonize more pristine areas in the vicinity. On the other hand, they might represent refuges for palatable species, since horses seem to avoid them for grazing.     

Can digital image classification be used as a standardised method for surveying peatland vegetation cover?

The ability to carry out systematic, accurate and repeatable vegetation surveys is an essential part of long-term scientific studies into ecosystem biodiversity and functioning. However, current widely used traditional survey techniques such as destructive harvests, pin frame quadrats and visual cover estimates can be very time consuming and are prone to subjective variations. We investigated the use of digital image techniques as an alternative way of recording vegetation cover to plant functional type level on a peatland ecosystem. Using an established plant manipulation experimental site at Moor House NNR (an Environmental Change Network site), we compared visual cover estimates of peatland vegetation with cover estimates using digital image classification methods, from 0.5 m × 0.5 m field plots. Our results show that digital image classification of photographs taken with a standard digital camera can be used successfully to estimate dwarf-shrub and graminoid vegetation cover at a comparable level to field visual cover estimates, although the methods were less effective for lower plants such as mosses and lichens. Our study illustrates the novel application of digital image techniques to provide a new way of measuring and monitoring peatland vegetation to the plant functional group level, which is less vulnerable to surveyor bias than are visual field surveys. Furthermore, as such digital techniques are highly repeatable, we suggest that they have potential for use in long-term monitoring studies, at both plot and landscape scales.     

Two hundred years of land-use change in the South Swedish Uplands: comparison of historical map-based estimates with a pollen-based reconstruction using the landscape reconstruction algorithm

Long-term records of environmental history at decadal to millennial time-scales enable an assessment of ecosystem variability and responses to past anthropogenic disturbances and are fundamental for the development of environmental management strategies. This study examines the local variability of land-use history in the South Swedish Uplands over the last 200 years based on pollen records from three lake-sediment successions. Temporal changes in the proportional cover of 14 plant taxa were quantified as percentages using the landscape reconstruction algorithm (LRA). The LRA-based estimates of the extent of four land-use categories (cropland, meadows/grassland, wetland, outland/woodland) were compared to corresponding estimates based on historical maps and aerial photographs from ad 1769–1823, 1837–1895, 1946 and 2005. Although the LRA approach tends to overestimate grassland cover by 10–30 % for the two earliest time periods, the reconstructed vegetation composition is generally in good agreement with estimates based on the historical records. Subsequently, the LRA approach was used to reconstruct the 200-year history of local land-use dynamics at 20-year intervals around two small lakes. The qualitative assessment of difference approach, which requires fewer assumptions and parameters than LRA for objective evaluation of between-site differences in plant abundances, provides consistent results in general. Significant differences exist in the land-use history between the sites. Local catchment characteristics, such as soil conditions and wetland cover, appear important for the development of human impact on the landscape. Quantifications of past vegetation dynamics provide information on the amplitude, frequency and duration of the land-use changes and their effects on terrestrial and aquatic ecosystems, and should be taken into account when nature conservation strategies are developed.     

Re-creating Semi-natural Communities: Effect of Sowing Rate on Establishment of Calcareous Grassland

Restoration ecologists are increasingly aware of the potential to re-create chalk grassland on abandoned farmland. Success is often hampered by lack of desirable species in the seed bank and by poor dispersal from nearby sites. In certain schemes, the input of seed may be essential. Locally collected seed is desirable but availability is limited. We examined whether lower sowing rates than currently recommended may be successfully utilized, facilitating more-efficient use of available seed. Experimental plots on former agricultural land were sown at different rates in a randomized complete block, and the vegetation was surveyed for two years. We compared species richness and cover for chalk grassland plants and weeds - species not associated with chalk grassland communities. Values for cover and abundance were matched with data for communities of the British National Vegetation Classification (NVC). Species richness for chalk grassland plants increased with sowing rate and with time, although after two years there was no significant difference between the treatments sown at 0.4, 1.0, and 4.0 grams of seed per square meter. Weed species decreased with increasing rate and time. After two seasons, the vegetation on all treatment plots was similar to that of recognized NVC chalk grassland communities, while the controls were dominated by weeds and showed signs of developing into species-poor grassland. Higher rates rapidly eliminated weeds, but even a small inoculum of seed seemed to significantly enhance establishment of desirable plants and to reduce weed cover. We conclude that lower sowing rates would enable the desired vegetation to become established successfully, under appropriate conditions and management regimes. Lower rates allow for the re-creation of sizable areas using local seed, and they minimize damage to donor sites.     

Random Forest characterization of upland vegetation and management burning from aerial imagery

Aim The upland moorlands of Great Britain form distinctive landscapes of international conservation importance, comprising mosaics of heathland, acid grassland, blanket bog and bracken. Much of this landscape is managed by rotational burning to create gamebird habitat and there is concern over whether this is driving long‐term changes in upland vegetation communities. However, the inaccessibility and scale of uplands means that monitoring changes in vegetation and burning practices is difficult. We aim to overcome this problem by developing methods to classify aerial imagery into high‐resolution maps of dominant vegetation cover, including the distribution of burns on managed grouse moors. Location  Peak District National Park, England, UK. Methods Colour and infrared aerial photographs were classified into seven dominant land‐cover classes using the Random Forest ensemble machine learning algorithm. In addition, heather (Calluna vulgaris) was further differentiated into growth phases, including sites that were newly burnt. We then analysed the distributions of the vegetation classes and managed burning using detrended correspondence analysis. Results Classification accuracy was c. 95% and produced a 5‐m resolution map for 514 km² of moorland. Cover classes were highly aggregated and strong nonlinear effects of elevation and slope and weaker effects of aspect and bedrock type were evident in structuring moorland vegetation communities. The classification revealed the spatial distribution of managed burning and suggested that relatively steep areas may be disproportionately burnt. Main conclusions Random Forest classification of aerial imagery is an efficient method for producing high‐resolution maps of upland vegetation. These may be used to monitor long‐term changes in vegetation and management burning and infer species–environment relationships and can therefore provide an important tool for effective conservation at the landscape scale.     

Prairie vegetation and soil nutrient responses to ungulate carcasses

The impact of large ungulate carcasses on grassland dynamics was investigated by monitoring vegetation and soil nutrients in 50-cm circular zones around the center of bison (Bos bison), cattle (B. taurus), and deer (Odocoileus virginianus) carcasses. An ungulate carcass creates an intense localized disturbance that varies with animal size and the season of death. Unlike other natural disturbances, carcasses deposit a concentrated pulse of nutrients into the soil. One year after death, inorganic nitrogen concentrations were significantly higher in the inner 50 cm at both adult and juvenile carcass sites than in surrounding prairie. Areas around a carcass became zones of fertility that favored different components of the vegetation and stimulated biomass production. Species richness and diversity at the center of carcass sites were lowest 1 year after death, but increased significantly in subsequent years. However, warm-season perennial grasses declined near the center of carcass sites and did not recover. Five years after death, ungulate carcass sites remained disturbed patches that harbored vegetation characteristically different in composition and stature from surrounding prairie. By providing a niche for species not normally found in undisturbed prairie, carcasses increased community heterogeneity and may play an important role in adding spatial complexity to grassland ecosytems. Received: 12 April 1999 / Accepted: 7 September 1999     

Germinable soil seed-bank of former grassland converted to coniferous plantation

The influence of afforestation with cedars on field layer vegetation and on the germinable soil seed-bank were investigated along a 60-m transect merging from open grassland to sparse and dense canopy cover. A total of 132 species were found, 76 in the seed-bank and 109 in the vegetation, with 53 species in common. Conifer cover was not found to be associated with a decrease in total number of species in the vegetation or seed-bank, but the mean number of species in the vegetation, total cover in field layer vegetation and mean number of individuals in the seed-bank decreased significantly from grassland to forest stands. The grassland seed-bank was dominated by Saxifraga tridactylites and Veronica agrestis; the seed-bank of plots of scattered cedars was dominated by Trifolium incarnatum ssp. molinerii; and that of dense cedar plantations was dominated by Campanula rapunculus. The number and cover of grassland species of field layer vegetation decreased in the forest, with respect to open grassland, and the same trend was found for density of individuals in the seed-bank. It is concluded that grassland restoration by cutting cedars cannot rely on the presence of grassland species in the soil seed-bank.     

Local grassland restoration affects insect communities

1. It is hypothesised that ecological restoration in grasslands can induce an alternative stable state shift in vegetation. The change in vegetation influences insect community assemblages and allows for greater functional redundancy in pollination and refuge for native insect species. 2. Insect community assemblages at eight coastal California grassland sites were evaluated. Half of these sites had undergone restoration through active revegetation of native grassland flora and half were non‐restored. Insects were collected from Lupinus bicolor (Fabaceae) within 2 × 2‐m² plots in spring 2017. Lupinus bicolor is a common native species that is used in California restoration projects, and home and state landscaping projects. 3. Ordination demonstrated that insect community assemblages were different between restored and non‐restored sites. These differences were seen in insect functional groups as well as taxa‐specific differences and were found to be driven by environmental characteristics such as non‐native forb cover. 4. Functional redundancy of herbivores decreased at restored sites, while pollinators became more redundant compared with non‐restored sites. The assemblages of the common species found at restoration sites contained more native insects than those found at non‐restored sites, including species such as Bombus vosnesenskii. 5. Local grassland restoration has the potential to induce an alternative stable state change and affect insect community assemblages. Additionally, it was found that grassland restoration can be a potential conservation tool to provide refugia for bumblebees (Bombus), but additional studies are required to fully understand its broader applicability.     

Plant cover estimation based on the beta distribution in grassland vegetation

Cover is the most frequently used measure of abundance in vegetation surveys of grasslands, and various qualitative and semi-quantitative methods have been developed for visual estimation of this metric. Field survey is usually made with a point-grid plate. The frequency distributions of cover derived from point-grid counts follow a beta distribution. Combining point-grid counts from a field survey and the beta distribution for a statistical analysis, we developed an effort-saving cover-measurement method. Cover is measured with a transparent plastic plate on which, for example, 10 × 10 = 100 points are arranged in a lattice with 1-cm grid spacing (thus, one point count represents 1 cm² of cover). N quadrats are set out at randomly dispersed sites in a grassland, and, in each, the plastic plate is used for making counts. The number of grid points located above a given species is counted in every quadrat until the number of counted points reaches a given value c, which is determined in advance. If the number of counted points reaches c in a quadrat, the count is stopped and the quadrat is classified in the category “>c”. In quadrats where c is not attained, full point counts above the species bodies are made. Let g be the number of observed quadrats whose cover is ≤c. Using these g cover measurements and the number of quadrats (N − g) with cover >c, we can quantitatively estimate cover for each species and the spatial pattern index value based on the maximum likelihood method. In trial counts using this method, the time savings varied between 5% and 41%, depending on the shape of the cover frequency distribution. The mean cover value estimates agreed well with conventional measures without a stopping point (i.e., based on full counts of all points in each quadrat).     

Effects on vegetative restoration of two treatments: erosion matting and supplemental rock cover in the alpine ecosystem

Unsanctioned travel routes through alpine ecosystems can influence water drainage patterns, cause sedimentation of streams, and erode soils. These disturbed areas can take decades to revegetate. In 2012, a volunteer‐driven project restored a 854‐m section of unsanctioned road along the Continental Divide in Colorado, United States. The restored area was seeded with three native grass species and then treated by installing erosion matting or adding supplemental rock cover. Four years later, results suggest that the seeding along with the use of erosion matting or supplemental rock can enhance revegetation. Matting appeared to accumulate litter, and this effect might have contributed to enhanced moisture retention. Treated areas contained 40% of the vegetation cover found on adjacent controls, which averaged 69% vascular plant absolute cover. Recovery on both treatments was markedly higher than published estimates of passive revegetation of disturbed areas measured elsewhere suggesting seeding with added cover or protection led to substantial vegetative cover after 4 years. Two of the 3 seeded grass species, Trisetum spicatum and Poa alpina, dominated the restored plots, composing 81.7% of relative vegetation cover on matting sites and 73.4% of relative cover on rock‐supplemented areas. Presumably due to its preference for moister sites, Deschampsia cespitosa had low establishment rates. Volunteer species, that is species that appeared on their own, contributed 6.3% to the absolute vegetation cover of matting and rock sites, and species such as Minuartia biflora, Minuartia obtusiloba, Poa glauca, and Festuca brachyphylla should be considered for use in future restorations.     

Mapping species diversity patterns in the Kansas shortgrass region by integrating remote sensing and vegetation analysis

Abstract. Field reconnaissance data are used in a supervised classification of a 1989 Landsat Thematic Mapper (TM) scene to create a digital database of high and low quality grasslands for northwestern Kansas. To test the classification of grassland quality, plot-based vegetation data collected from 32 sites are analyzed for differences in species composition, and evaluated for relationships between TM data and plant diversity. Significant differences between predicted high and low quality grassland sites are identified for the following variables: cover of the dominant and common species, overall species richness, number of forbs, number of grasses, and plant diversity using Shannon's index. Linear regression analysis reveals a significant relationship (r²= 0.61) between species diversity and the prediction of grassland quality from the supervised classification. The addition of spectral data to this model did not improve the prediction of species diversity, but spectral brightness is identified as a key feature in mapping shortgrass vegetation diversity patterns with TM data.     

基于像元三分模型的锡林郭勒草原光合植被和非光合植被覆盖度估算

定量的估算草原光合植被覆盖度(f_(PV))和非光合植被覆盖度(f_(NPV))对草原畜牧业和土地荒漠化具有重要的意义。以锡林郭勒盟西乌珠穆沁旗为研究区,以MODIS 500 m分辨率地表反射率产品MOD09GHK为数据源,采用干枯燃料指数(DFI)指数构建NDVI-DFI像元三分模型估算了锡林郭勒草原的fPV和f_(NPV),并分析了锡林郭勒草原fPV和f_(NPV)的动态变化。研究结果表明:锡林郭勒草原NDVI-DFI特征空间表现为三角形,与理论上的概念模型基本一致,符合像元三分模型的基本假设;NDVI-DFI像元三分模型适用于对草原黄枯期_(NPV)的监测,对草原生长期_(NPV)监测并不十分敏感;利用NDVI-DFI像元三分模型估算的fPV和f_(NPV)动态变化与牧草物候发育特征相吻合,可以有效的估算典型草原地区fPV和f_(NPV)值,进一步将其应用于长时间序列的典型草原fPV和f_(NPV)动态变化分析。     

Restoration prospects of abandoned species‐rich sandy grassland in Hungary

Abstract. Secondary succession and seed bank formation was studied in a formerly grazed, abandoned, eastern Hungarian sandy steppe‐meadow (Pulsatillo‐Festucetum). The vegetation was sampled at different elevations of a sand dune which became partly invaded by the tree Robinia pseudo‐acacia ca. 10 yr ago. Pre‐abandonment vegetation records were used as historic references. Though composition of the non‐invaded grassland only changed moderately, dominance of tall grasses (Elymus hispidus, Poa angustifolia) increased significantly at the cost of annuals and low stature perennials. In the stand invaded by Robinia most grassland species were lost and replaced by nitrophytes. Vertical position influenced species abundance, but affected the composition only moderately. Fine‐scale zonation of the vegetation also changed with time. Species richness of the above‐ground vegetation and the seed density of soil samples at the lower elevation were slightly greater than at the higher sites. Seed banks of sensitive grassland specialists (e.g. Pulsatilla pratensis subsp. hungarica) disappeared during grass encroachment. Following extinction from above‐ground vegetation, restoration must rely on dispersal from adjacent areas. In contrast, several annuals and perennials, which survived this degradation stage in the above‐ground vegetation, possessed seed banks. Many of these species became extinct from the vegetation during the Robinia invasion but left viable persistent seeds. This fact is promising for restoration of the Potentillo‐Festucetum sandy pasture. Competitive weedy species and sprouting Robinia can, however, limit seedling establishment.