Is soil carbon mostly root carbon? Mechanisms for a specific stabilisation

Understanding the origin of the carbon (C) stabilised in soils is crucial in order to device management practices that will foster Caccumulation in soils. The relative contributions to soilC pools of roots vs. shoots is one aspect that has been mostly overlooked, although it appears a key factor that drives the fate of plant tissueC either as mineralized CO₂ or as stabilized soil organic matter (SOM). Available studies on the subject consistently indicate that rootC has a longer residence time in soil than shootC. From the few studies with complete datasets, we estimated that the mean residence time in soils of root-derived C is 2.4times that of shoot-derived C. Our analyses indicate that this value is biased neither by an underestimation of root contributions, as exudation was considered in the analysis, nor by a priming effect of shoot litter on SOM. Here, we discuss the main SOM stabilisation mechanisms with respect to their ability to specifically protect root-derived SOM. Comparing in situ and incubation experiments suggests that the higher chemical recalcitrance of root tissues as compared to that of shoots is responsible for only a small portion, i.e. about one fourth, of the difference in mean residence time in soils of root-derived vs. shoot-derivedC. This suggests that SOM protection mechanisms other than chemical recalcitrance are also enhanced by root activities: (1)physico-chemical protection, especially in deeper horizons, (2)micrometer-scale physical protection through myccorhiza and root-hair activities, and (3)chemical interactions with metal ions. The impact of environmental conditions within deeper soil layers on rootC stabilisation appear difficult to assess, but is likely, if anything, to further increase the ratio between the mean residence time of root vs. shootC in soils. Future advances are expected from isotopic studies conducted at the molecular level, which will help unravel the fate of individual shoot and root compounds, such as cutins and suberins, throughout soil profiles.     

Whales in the carbon cycle: can recovery remove carbon dioxide?

The great whales (baleen and sperm whales), through their massive size and wide distribution, influence ecosystem and carbon dynamics. Whales directly store carbon in their biomass and contribute to carbon export through sinking carcasses. Whale excreta may stimulate phytoplankton growth and capture atmospheric CO₂; such indirect pathways represent the greatest potential for whale-carbon sequestration but are poorly understood. We quantify the carbon values of whales while recognizing the numerous ecosystem, cultural, and moral motivations to protect them. We also propose a framework to quantify the economic value of whale carbon as populations change over time. Finally, we suggest research to address key unknowns (e.g., bioavailability of whale-derived nutrients to phytoplankton, species- and region-specific variability in whale carbon contributions).     

Is soil carbon disappearing? The dynamics of soil organic carbon in Java

Research in the soil of the tropics mostly has demonstrated the decline of soil organic carbon (SOC) after conversion of primary forest to plantation and cultivated lands. This paper illustrates the dynamics of SOC on the island of Java, Indonesia, from 1930 to 2010. We used 2002 soil profile observations containing organic carbon (C) analysis in the topsoil, which were collected by the Indonesian Center for Agricultural Land Resources Research & Development from 1923 to 2007. Results show the obvious decline of SOC values from around 2% in 1930–1940 to 0.8% in 1960–1970. However, there has been an increase of SOC content since 1970, with a median level of 1.1% in the year 2000. Our analysis suggests that the human influence and agricultural practices on SOC in Java have been a stronger influence than the environmental factors. SOC for the top 10 cm has shown a net accumulation rate of 0.2–0.3 Mg C ha^?1 yr^?1 during the period 1990–2000. These findings give rise to optimism for increased soil C sequestration in the tropics.     

Amperometric immunosensor based on multiwalled carbon nanotubes/Prussian blue/nanogold-modified electrode for determination of α-fetoprotein

In this article, a conspicuously simple and highly sensitive amperometric immunosensor based on the sequential electrodeposition of Prussian blue (PB) and gold nanoparticles (GNPs) on multiwalled carbon nanotube (MWCNT)-modified glassy carbon electrode (GCE) surface is proposed for the detection of α-fetoprotein (AFP). By comparison with PB, the MWCNT/PB composite film had been proven to show much better electrochemical stability and a larger response current. The electrodeposited GNP film can be used not only to immobilize biomolecules but also to avoid the leakage of PB and to prevent shedding of MWCNT/PB composite film from the electrode surface. The performance and factors influencing the performance of the immunosensor were investigated. Under optimal experimental conditions, the proposed immunosensor for AFP was observed with an ultralow limit of detection (LOD) equal to 3 pg/ml (at 3δ), and the linear working range spanned the concentrations of AFP from 0.01 to 300 ng/ml. Moreover, the immunosensor, as well as a commercially available kit, was examined for use in the determination of AFP in real human serum specimens. More significant, the assay mentioned here is simpler than the traditional enzyme-linked immunosorbent assay (ELISA), and an excellent correlation of levels of AFP measured was obtained, indicating that the developed immunoassay could be a promising alternative approach for detection of AFP and other tumor markers in the clinical diagnosis.     

Initial soil organic carbon stocks govern changes in soil carbon: Reality or artifact?

Changes in soil organic carbon (SOC) storage have the potential to affect global climate; hence identifying environments with a high capacity to gain or lose SOC is of broad interest. Many cross-site studies have found that SOC-poor soils tend to gain or retain carbon more readily than SOC-rich soils. While this pattern may partly reflect reality, here we argue that it can also be created by a pair of statistical artifacts. First, soils that appear SOC-poor purely due to random variation will tend to yield more moderate SOC estimates upon resampling and hence will appear to accrue or retain more SOC than SOC-rich soils. This phenomenon is an example of regression to the mean. Second, normalized metrics of SOC change—such as relative rates and response ratios—will by definition show larger changes in SOC at lower initial SOC levels, even when the absolute change in SOC does not depend on initial SOC. These two artifacts create an exaggerated impression that initial SOC stocks are a major control on SOC dynamics. To address this problem, we recommend applying statistical corrections to eliminate the effect of regression to the mean, and avoiding normalized metrics when testing relationships between SOC change and initial SOC. Careful consideration of these issues in future cross-site studies will support clearer scientific inference that can better inform environmental management.     

Magnetic nanocomposite of anti-human IgG/COOH-multiwalled carbon nanotubes/Fe₃O₄ as a platform for electrochemical immunoassay

An electrochemical immunosensing method was developed based on a magnetic nanocomposite. The multiwalled carbon nanotubes (MWCNTs) were treated with nitric acid to produce carboxyl groups at the open ends. Then, Fe₃O₄ nanoparticles were deposited on COOH–MWCNTs by chemical coprecipitation of Fe²⁺ and Fe³⁺ salts in an alkaline solution. Goat anti-human IgG (anti-hIgG) was covalently attached to magnetic nanocomposite through amide bond formation between the carboxylic groups of MWCNTs and the amine groups of anti-hIgG. The prepared bio-nanocomposite was used for electrochemical sensing of human tetanus IgG (hIgG) as a model antigen. The anti-hIgG magnetic nanocomposite was fixed on the surface of a gold plate electrode using a permanent magnet. The hIgG was detected using horseradish peroxidase (HRP)-conjugated anti-hIgG in a sandwich model. Electrochemical detection of hIgG was carried out in the presence of H₂O₂ and KI as substrates of HRP. Using this method, hIgG was detected in a concentration range from 30 to 1000 ng ml^?1 with a correlation coefficient of 0.998 and a detection limit of 25 ng ml^?1 (signal/noise = 3). The designed immunosensor was stable for 1 month.     

Current forest carbon stocks and carbon sequestration potential in Anhui Province,China北大核心CSCD

Aims This study was conducted to investigate carbon stocks in forest ecosystems of different stand ages in Anhui Province, and to identify the carbon sequestration potential of climax forests controlled by the natural environment conditions. Methods Data were collected based on field investigations and simulations were made with the BIOME4 carbon cycle model. Important findings Currently, the total forest carbon stocks in Anhui Province amounts to 714.5 Tg C: 402.1 Tg C in vegetation and 312.4 Tg C in soil. Generally, both the total and vegetation carbon density exhibit an increasing trend with the natural growth of forest stands. Soil carbon density increases from young to near mature forests, and then gradually decreases thereafter. Young and middle-aged forests account for 75% of the total forest area in Anhui Province, with potentially an additional 125.4 Tg C to be gained after the young and middle-aged forests reach near mature stage. Results of BIOME4 simulations show that potentially an additional 245.7 Tg C, including 153.7 Tg C in vegetation and 92 Tg C in soil, could be gained if the current forests are transformed into climax forest ecosystems in Anhui Province.     

Mass production of poly-β-hydroxybutyric acid by fed-batch culture with controlled carbon/nitrogen feeding

Summary The effect of the ratio of methanol to ammonia, in the feeding solution the C/N ratio, on microbial PHB production was investigated. A constant C/N ratio regulated both the PHB content and the specific rate of PHB production. The results indicated that to produce the maximum PHB effectively in a short time the C/N ratio should be controlled automatically according to the increase in PHB content. Variation of the PHB content was estimated by tracing the timecourse of CO₂ concentration in exhaust gas. When the cell concentration reached 70 g/l, C/N ratio was gradually increased from the initial C/N ratio of 10 (mol methanol/mol ammonia). At 121 h, concentration of PHB reached 136 g/l, which was the maximum level so far obtained. The reaction time was considerably shortened compared with our previous study (175 h). Furthermore, PHB concentration reached 149 g/l at 170 h and total cell concentration became 233 g/l. PHB yield from methanol was 0.20 (g PHB/g methanol), which was also superior to the previous result of 0.18.     

Sensitive amperometric immunosensor for α-fetoprotein based on carbon nanotube/gold nanoparticle doped chitosan film

A novel strategy for the fabrication of sensitive immunosensor to detect α-fetoprotein (AFP) in human serum has been proposed. The immunosensor was prepared by immobilizing AFP antigen onto the glassy carbon electrode (GC) modified by gold nanoparticles and carbon nanotubes doped chitosan (GNP/CNT/Ch) film. GNP/CNT hybrids were produced by one-step synthesis based on the direct redox reaction. The electrochemical properties of GNP/CNT/Ch films were characterized by impedance spectroscopy and cyclic voltammetry. It was indicated that GNP/CNT nanohybrid acted as an electron promoter and accelerated the electron transfer. Sample AFP, immobilized AFP, and alkaline phosphatase (ALP)-labeled antibody were incubated together for the determination based on a competitive immunoassay format. After the immunoassay reaction, the bound ALP label on the modified GC led to an amperometric response of 1-naphthyl phosphate (1-NP), which was changed with the different antigen concentrations in solution. Under the optimized experimental conditions, the resulting immunosensor could detect AFP in a linear range from 1 to 55 ng ml⁻¹ with a detection limit of 0.6 ng ml⁻¹. The proposed immunosensor, by using GNP/CNT/Ch as the immobilization matrix of AFP, offers an excellent amperometric response of ALP-anti-AFP to 1-NP. The immunosensor provided a new alternative to the application of other antigens or other bioactive molecules.     

Indonesia’s blue carbon: a globally significant and vulnerable sink for seagrass and mangrove carbon

The global significance of carbon storage in Indonesia’s coastal wetlands was assessed based on published and unpublished measurements of the organic carbon content of living seagrass and mangrove biomass and soil pools. For seagrasses, median above- and below-ground biomass was 0.29 and 1.13 Mg C ha^?1 respectively; the median soil pool was 118.1 Mg C ha^?1. Combining plant biomass and soil, median carbon storage in an Indonesian seagrass meadow is 119.5 Mg C ha^?1. Extrapolated to the estimated total seagrass area of 30,000 km², the national storage value is 368.5 Tg C. For mangroves, median above- and below-ground biomass was 159.1 and 16.7 Mg C ha^?1, respectively; the median soil pool was 774.7 Mg C ha^?1. The median carbon storage in an Indonesian mangrove forest is 950.5 Mg C ha^?1. Extrapolated to the total estimated mangrove area of 31,894 km², the national storage value is 3.0 Pg C, a likely underestimate if these habitats sequester carbon at soil depths >1 m and/or sequester inorganic carbon. Together, Indonesia’s seagrasses and mangroves conservatively account for 3.4 Pg C, roughly 17 % of the world’s blue carbon reservoir. Continued degradation and destruction of these wetlands has important consequences for CO₂ emissions and dissolved carbon exchange with adjacent coastal waters. We estimate that roughly 29,040 Gg CO₂ (eq.) is returned annually to the atmosphere–ocean pool. This amount is equivalent to about 3.2 % of Indonesia’s annual emissions associated with forest and peat land conversion. These results highlight the urgent need for blue carbon and REDD+ projects as a means to stem the decline in wetland area and to mitigate the release of a significant fraction of the world’s coastal carbon stores.     

Air-sea carbon dioxide equilibrium: Will it be possible to use seaweeds for carbon removal offsets?

To limit global warming below 2°C by 2100, we must drastically reduce greenhouse gas emissions and additionally remove ~100–900 Gt CO₂ from the atmosphere (carbon dioxide removal, CDR) to compensate for unavoidable emissions. Seaweeds (marine macroalgae) naturally grow in coastal regions worldwide where they are crucial for primary production and carbon cycling. They are being considered as a biological method for CDR and for use in carbon trading schemes as offsets. To use seaweeds in carbon trading schemes requires verification that seaweed photosynthesis that fixes CO₂ into organic carbon results in CDR, along with the safe and secure storage of the carbon removed from the atmosphere for more than 100 years (sequestration). There is much ongoing research into the magnitude of seaweed carbon storage pools (e.g., as living biomass and as particulate and dissolved organic carbon in sediments and the deep ocean), but these pools do not equate to CDR unless the amount of CO₂ removed from the atmosphere as a result of seaweed primary production can be quantified and verified. The draw-down of atmospheric CO₂ into seawater is via air-sea CO₂ equilibrium, which operates on time scales of weeks to years depending upon the ecosystem considered. Here, we explain why quantifying air-sea CO₂ equilibrium and linking this process to seaweed carbon storage pools is the critical step needed to verify CDR by discrete seaweed beds and nearshore and open ocean aquaculture systems prior to their use in carbon trading.     

Resonance assignment of methionine methyl groups and χ3angular information from long-range proton—carbon and carbon—carbon J correlation in a calmodulin—peptide complex

Summary Several simple 3D experiments are used to provide J correlations between methionine C methyl carbons and either the CH₂ protons or C and C. The intensity of the J correlations provides information on the size of the three-bond J couplings and thereby on the ³ torsion angle. In addition, a simple 3D version of the HMBC experiment provides a sensitive link between the CH₃ methyl protons and C. The methods are demonstrated for a 20 kDa complex between calmodulin and a 26-residue peptide fragment of skeletal muscle myosin light chain kinase.     

Can heterotrophic uptake of dissolved organic carbon and zooplankton mitigate carbon budget deficits in annually bleached corals?

Annual coral bleaching events due to increasing sea surface temperatures are predicted to occur globally by the mid-century and as early as 2025 in the Caribbean, and severely impact coral reefs. We hypothesize that heterotrophic carbon (C) in the form of zooplankton and dissolved organic carbon (DOC) is a significant source of C to bleached corals. Thus, the ability to utilize multiple pools of fixed carbon and/or increase the amount of fixed carbon acquired from one or more pools of fixed carbon (defined here as heterotrophic plasticity) could underlie coral acclimatization and persistence under future ocean-warming scenarios. Here, three species of Caribbean coral—Porites divaricata, P. astreoides, and Orbicella faveolata—were experimentally bleached for 2.5 weeks in two successive years and allowed to recover in the field. Zooplankton feeding was assessed after single and repeat bleaching, while DOC fluxes and the contribution of DOC to the total C budget were determined after single bleaching, 11 months on the reef, and repeat bleaching. Zooplankton was a large C source for P. astreoides, but only following single bleaching. DOC was a source of C for single-bleached corals and accounted for 11–36 % of daily metabolic demand (CHAR_DOC), but represented a net loss of C in repeat-bleached corals. In repeat-bleached corals, DOC loss exacerbated the negative C budgets in all three species. Thus, the capacity for heterotrophic plasticity in corals is compromised under annual bleaching, and heterotrophic uptake of DOC and zooplankton does not mitigate C budget deficits in annually bleached corals. Overall, these findings suggest that some Caribbean corals may be more susceptible to repeat bleaching than to single bleaching due to a lack of heterotrophic plasticity, and coral persistence under increasing bleaching frequency may ultimately depend on other factors such as energy reserves and symbiont shuffling.     

How organic carbon derived from multiple sources contributes to carbon sequestration processes in a shallow coastal system?

Carbon captured by marine organisms helps sequester atmospheric CO₂, especially in shallow coastal ecosystems, where rates of primary production and burial of organic carbon (OC) from multiple sources are high. However, linkages between the dynamics of OC derived from multiple sources and carbon sequestration are poorly understood. We investigated the origin (terrestrial, phytobenthos derived, and phytoplankton derived) of particulate OC (POC) and dissolved OC (DOC) in the water column and sedimentary OC using elemental, isotopic, and optical signatures in Furen Lagoon, Japan. Based on these data analysis, we explored how OC from multiple sources contributes to sequestration via storage in sediments, water column sequestration, and air–sea CO₂ exchanges, and analyzed how the contributions vary with salinity in a shallow seagrass meadow as well. The relative contribution of terrestrial POC in the water column decreased with increasing salinity, whereas autochthonous POC increased in the salinity range 10–30. Phytoplankton‐derived POC dominated the water column POC (65–95%) within this salinity range; however, it was minor in the sediments (3–29%). In contrast, terrestrial and phytobenthos‐derived POC were relatively minor contributors in the water column but were major contributors in the sediments (49–78% and 19–36%, respectively), indicating that terrestrial and phytobenthos‐derived POC were selectively stored in the sediments. Autochthonous DOC, part of which can contribute to long‐term carbon sequestration in the water column, accounted for >25% of the total water column DOC pool in the salinity range 15–30. Autochthonous OC production decreased the concentration of dissolved inorganic carbon in the water column and thereby contributed to atmospheric CO₂ uptake, except in the low‐salinity zone. Our results indicate that shallow coastal ecosystems function not only as transition zones between land and ocean but also as carbon sequestration filters. They function at different timescales, depending on the salinity, and OC sources.     

Distribution of soil phytolith-occluded carbon in the Chinese Loess Plateau and its implications for silica–carbon cycles

Background and aims

Plants absorb and carry soluble silica from soils and then deposit SiO₂?·?nH₂O within themselves producing amorphous silica particles known as phytoliths. Trace amount of organic carbon is occluded during phytolith formation referred to as phytolith-occluded carbon (PhytOC). This carbon fraction has been recognized as an important way of carbon biosequestration. Previous studies have investigated the PhytOC contents of many crop plants and their contribution to global carbon sink. However, the PhytOC in soil is less focused. In this study, we investigated the distribution of soil PhytOC in the Chinese Loess Plateau (CLP).

Methods

Twenty-six soil profiles were collected in the Chinese Loess Plateau. A wet oxidation method was used for phytolith extraction. Occluded carbon was determined by element analyzer.

Results

Our results showed that the soil PhytOC density (SPCD) ranged from 0.757 to 23.110 g/m² among different soil profiles. The SPCD of profiles in the Southern CLP was generally higher than that in the Northern CLP. It was estimated that 5.35 Mt of PhytOC was stored in the upper soil of the CLP. We also estimated the annual phytolith flux into the Yellow River from the CLP by soil erosion and about 2.5 Mt of phytoliths eroded and transported into rivers per year.

Conclusions

Our study indicated that PhytOC was one of the potential biosequestration way and phytoliths had an important influence on biogeochemical cycle of silica. Our results suggested that the soil PhytOC was mainly influenced by different plant communities.     

A carbon nanotube/silica sol–gel architecture for immobilization of horseradish peroxidase for electrochemical biosensor

A novel third-generation biosensor for hydrogen peroxide (H₂O₂) has been constructed based on horseradish peroxidase (HRP) immobilized by the sol–gel (SG) technology on carbon nanotube (CNT)-modified electrode. CNT has good promotion effects on the direct electron transfer between HRP and the electrode surface and the SG network provides a biocompatible microenvironment for enzyme. The immobilized HRP retained its bioelectrocatalytic activity for the reduction of hydrogen peroxide and can respond to the change of concentration of H₂O₂ rapidly. The heterogeneous electron transfer rate constant was evaluated to be 2.8 ± 0.4 s⁻¹. The amperometric response to H₂O₂ shows a linear relation in the range from 0.5 to 300 μmol l⁻¹ and a detection limit of 0.1 μmol l⁻¹ (S/N = 3). The K _M^app value of HRP immobilized on the electrode surface was found to be 1.35 mmol l⁻¹. The biosensor exhibited high sensitivity, rapid response and excellent long-term stability.     

Can carbon credits fund riparian forest restoration?

Ecological restoration is increasingly called on to provide ecosystem services (ES) valuable to humans, as well as to benefit biodiversity and improve wildlife habitat. Where mechanisms to pay for ES exist, they may serve as incentives to embark on habitat restoration projects. We evaluated the potential of newly established carbon markets in the United States to incentivize afforestation along riparian corridors, by comparing the income earnable by carbon offset credits with the costs of planting, maintaining, and registering such a restoration project in California. We used a 20‐year chronosequence of riparian forest sites along the Sacramento River as our model project. We found that carbon credits can repay more than 100% of costs after two decades of regrowth, if sufficient effort is put into sampling intensity in the first post‐restoration decade. However, carbon credits alone are unlikely to entice landowners currently engaged in agricultural activities to switch from farming crops to farming habitat.     

Application of a Cu–chitosan/multiwalled carbon nanotube film-modified electrode for the sensitive determination of rutin

A new sensitive electrochemical sensor, a glassy carbon electrode modified with chemically cross-linked copper-complexed chitosan/multiwalled carbon nanotubes (Cu–CS/MWCNT/GCE), for rutin analysis was constructed. Experimental investigations of the influence of several parameters showed that the rutin can effectively accumulate on the surface of the Cu–CS/MWCNT/GCE, which accumulation caused a pair of well-defined redox peaks in the electrochemical signal when measurements were carried out in Britton–Robinson buffer solution (pH 3, 0.04 M). The surface of the Cu–CS/MWCNT/GCE was characterized by field-emission scanning electron microscopy, transmission electron microscopy, and X-ray diffractometry analysis. In a rutin concentration range of 0.05–100 μM and under optimized conditions, a linear relationship between the oxidation peak current of rutin and its concentration was obtained with a detection limit of 0.01 μM. The Cu–CS/MWCNT/GCE showed good selectivity, stability, and reproducibility. Moreover, the sensor was used to determine the presence of rutin in fruits with satisfactory results.     

Collisional fragmentation of central carbon metabolites in LC-MS/MS increases precision of ¹³C metabolic flux analysis

Experimental determination of fluxes by (13)C-tracers relies on detection of (13)C-patterns in metabolites or by-products. In the field of (13)C metabolic flux analysis, the most recent developments point toward recording labeling patterns by liquid chromatography (LC)-mass spectrometry (MS)/MS directly in intermediates in central carbon metabolism (CCM) to increase temporal resolution. Surprisingly, the flux studies published so far with LC-MS measurements were based on intact metabolic intermediates-thus neglected the potential benefits of using positional information to improve flux estimation. For the first time, we exploit collisional fragmentation to obtain more fine-grained (13)C-data on intermediates of CCM and investigate their impact in (13)C metabolic flux analysis. For the case study of Bacillus subtilis grown in mineral medium with (13)C-labeled glucose, we compare the flux estimates obtained by iterative isotopologue balancing of (13)C-data obtained either by LC-MS/MS for solely intact intermediates or LC-MS/MS for intact and fragmented intermediates of CCM. We show that with LC-MS/MS data, fragment information leads to more precise estimates of fluxes in pentose phosphate pathway, glycolysis, and to the tricarboxylic acid cycle. Additionally, we present an efficient analytical strategy to rapidly acquire large sets of (13)C-patterns by tandem MS, and an in-depth analysis of the collisional fragmentation of primary intermediates. In the future, this catalogue will enable comprehensive in silico calculability analyses to identify the most sensitive measurements and direct experimental design.