Nitrogen–climate interactions in US agriculture

Agriculture in the United States (US) cycles large quantities of nitrogen (N) to produce food, fuel, and fiber and is a major source of excess reactive nitrogen (Nr) in the environment. Nitrogen lost from cropping systems and animal operations moves to waterways, groundwater, and the atmosphere. Changes in climate and climate variability may further affect the ability of agricultural systems to conserve N. The N that escapes affects climate directly through the emissions of nitrous oxide (N₂O), and indirectly through the loss of nitrate (NO₃ ^?), nitrogen oxides (NO _x ) and ammonia to downstream and downwind ecosystems that then emit some of the N received as N₂O and NO _x . Emissions of NO _x lead to the formation of tropospheric ozone, a greenhouse gas that can also harm crops directly. There are many opportunities to mitigate the impact of agricultural N on climate and the impact of climate on agricultural N. Some are available today; many need further research; and all await effective incentives to become adopted. Research needs can be grouped into four major categories: (1) an improved understanding of agricultural N cycle responses to changing climate; (2) a systems-level understanding of important crop and animal systems sufficient to identify key interactions and feedbacks; (3) the further development and testing of quantitative models capable of predicting N-climate interactions with confidence across a wide variety of crop-soil-climate combinations; and (4) socioecological research to better understand the incentives necessary to achieve meaningful deployment of realistic solutions.     

Effects of Watershed Land use on Nitrogen Concentrations and δ 15 Nitrogen in Groundwater

Eutrophication is a major agent of change affecting freshwater, estuarine, and marine systems. It is largely driven by transportation of nitrogen from natural and anthropogenic sources. Research is needed to quantify this nitrogen delivery and to link the delivery to specific land-derived sources. In this study we measured nitrogen concentrations and δ¹⁵N values in seepage water entering three freshwater ponds and six estuaries on Cape Cod, Massachusetts and assessed how they varied with different types of land use. Nitrate concentrations and δ¹⁵N values in groundwater reflected land use in developed and pristine watersheds. In particular, watersheds with larger populations delivered larger nitrate loads with higher δ¹⁵N values to receiving waters. The enriched δ¹⁵N values confirmed nitrogen loading model results identifying wastewater contributions from septic tanks as the major N source. Furthermore, it was apparent that N coastal sources had a relatively larger impact on the N loads and isotopic signatures than did inland N sources further upstream in the watersheds. This finding suggests that management priorities could focus on coastal sources as a first course of action. This would require management constraints on a much smaller population.     

Does Anthropogenic Nitrogen Enrichment Increase Organic Nitrogen Concentrations in Runoff from Forested and Human-dominated Watersheds?

Although the effects of anthropogenic nitrogen (N) inputs on the dynamics of inorganic N in watersheds have been studied extensively, “the influence of N enrichment on organic N loss” is not as well understood. We compiled and synthesized data on surface water N concentrations from 348 forested and human-dominated watersheds with a range of N loads (from less than 100 to 7,100 kg N km⁻² y⁻¹) to evaluate the effects of N loading via atmospheric deposition, fertilization, and wastewater on dissolved organic N (DON) concentrations. Our results indicate that, on average, DON accounts for half of the total dissolved N (TDN) concentrations from forested watersheds, but it accounts for a smaller fraction of TDN in runoff from urban and agricultural watersheds with higher N loading. A significant but weak correlation (r ² = 0.06) suggests that N loading has little influence on DON concentrations in forested watersheds. This result contrasts with observations from some plot-scale N fertilization studies and suggests that variability in watershed characteristics and climate among forested watersheds may be a more important control on DON losses than N loading from atmospheric sources. Mean DON concentrations were positively correlated, however, with N load across the entire land-use gradient (r ² = 0.37, P < 0.01), with the highest concentrations found in agricultural and urban watersheds. We hypothesize that both direct contributions of DON from wastewater and agricultural amendments and indirect transformations of inorganic N to organic N represent important sources of DON to surface waters in human-dominated watersheds. We conclude that DON is an important component of N loss in surface waters draining forested and human-dominated watersheds and suggest several research priorities that may be useful in elucidating the role of N enrichment in watershed DON dynamics.     

Nitrogen fixation in moulds and yeasts—a reappraisal

Summary The ability to fix nitrogen of 10 strains of the yeasts Rhodotorula, Bullera and Torulopsis and 4 strains of Pullularia, all isolated from soils and some supplied by other investigators was examined using both the heavy nitrogen (¹⁵N₂) and acetylene reduction techniques. Rigorous standards for aseptic culture, freedom from combined nitrogen and precision of analysis were maintained. No fixation was observed in any of the organisms and the ability of any eucaryote cell to fix nitrogen is doubted. Suggestions for the previous reports of fixation are made.     

Nitrogen fixation in eukaryotes – New models for symbiosis

Background  

Nitrogen, a component of many bio-molecules, is essential for growth and development of all organisms. Most nitrogen exists in the atmosphere, and utilisation of this source is important as a means of avoiding nitrogen starvation. However, the ability to fix atmospheric nitrogen via the nitrogenase enzyme complex is restricted to some bacteria. Eukaryotic organisms are only able to obtain fixed nitrogen through their symbiotic interactions with nitrogen-fixing prokaryotes. These symbioses involve a variety of host organisms, including animals, plants, fungi and protists.     

Nitrogen Biogeochemistry in the Caribbean Sponge,Xestospongia muta: A Source or Sink of Dissolved Inorganic Nitrogen?

Background

Sponges have long been known to be ecologically important members of the benthic fauna on coral reefs. Recently, it has been shown that sponges are also important contributors to the nitrogen biogeochemistry of coral reefs. The studies that have been done show that most sponges are net sources of dissolved inorganic nitrogen (DIN; NH₄ ⁺ and NO₃ ⁻) and that nitrification, mediated by their symbiotic prokaryotes, is the primary process involved in supplying DIN to adjacent reefs.

Methodology/Principal Findings

A natural experiment was conducted with the Caribbean sponge Xestospongia muta from three different locations (Florida Keys, USA; Lee Stocking Island, Bahamas and Little Cayman, Cayman Islands). The DIN fluxes of sponges were studied using nutrient analysis, stable isotope ratios, and isotope tracer experiments. Results showed that the fluxes of DIN were variable between locations and that X. muta can be either a source or sink of DIN. Stable isotope values of sponge and symbiotic bacterial fractions indicate that the prokaryotic community is capable of taking up both NH₄ ⁺ and NO₃ ⁻ while the differences in δ ¹⁵N between the sponge and bacterial fractions from the NH₄ ⁺ tracer experiment suggest that there is translocation of labeled N from the symbiotic bacteria to the host.

Conclusions/Significance

Nitrogen cycling in X. muta appears to be more complex than previous studies have shown and our results suggest that anaerobic processes such as denitrification or anammox occur in these sponges in addition to aerobic nitrification. Furthermore, the metabolism of this sponge and its prokaryotic symbionts may have a significant impact on the nitrogen biogeochemistry on Caribbean coral reefs by releasing large amounts of DIN, including higher NH₄ ⁺ concentrations that previously reported.     

Nitrogen fixation and transfer in open ocean diatom–cyanobacterial symbioses

Many diatoms that inhabit low-nutrient waters of the open ocean live in close association with cyanobacteria. Some of these associations are believed to be mutualistic, where N₂-fixing cyanobacterial symbionts provide N for the diatoms. Rates of N₂ fixation by symbiotic cyanobacteria and the N transfer to their diatom partners were measured using a high-resolution nanometer scale secondary ion mass spectrometry approach in natural populations. Cell-specific rates of N₂ fixation (1.15–71.5 fmol N per cell h⁻¹) were similar amongst the symbioses and rapid transfer (within 30 min) of fixed N was also measured. Similar growth rates for the diatoms and their symbionts were determined and the symbiotic growth rates were higher than those estimated for free-living cells. The N₂ fixation rates estimated for Richelia and Calothrix symbionts were 171–420 times higher when the cells were symbiotic compared with the rates estimated for the cells living freely. When combined, the latter two results suggest that the diatom partners influence the growth and metabolism of their cyanobacterial symbionts. We estimated that Richelia fix 81–744% more N than needed for their own growth and up to 97.3% of the fixed N is transferred to the diatom partners. This study provides new information on the mechanisms controlling N input into the open ocean by symbiotic microorganisms, which are widespread and important for oceanic primary production. Further, this is the first demonstration of N transfer from an N₂ fixer to a unicellular partner. These symbioses are important models for molecular regulation and nutrient exchange in symbiotic systems.     

Nitrogen in interstitial waters in the Sahel; Natural Baseline, Pollutant or Resource?

Nitrate in the unsaturated zone between the soil surface and the water table was studied in agroforestry Parklands in north western Senegal by examination of samples obtained by hand auger. Depending on location, water tables existed at depths between 10 and 35m below ground. Previous studies of groundwater in this region had found that large concentrations of nitrate were unconnected with anthropogenic activity. The objective of this study was to determine whether nitrogen fixing vegetation had a role in groundwater nitrate accumulation and whether roots of trees were located deeply enough to access the nitrate. Accordingly, sample profiles were augered close to stems of nitrogen fixing trees, non-nitrogen fixing trees and also in adjacent areas that were unaffected by tree presence. These adjacent areas were typically open pasture or cultivated fields. Tree fine roots were quantified in the samples and examined for the presence of mycorrhizas. Similarly, sand/soil samples were examined and tested for the presence of nitrogen fixing rhizobia that were capable of forming functional nodules on appropriate host plants. Concentrations of nitrate were greatest in soils beneath nitrogen fixing trees and nitrate was more plentiful in profiles augered beneath nitrogen fixing crops than it was elsewhere suggesting that N-fixation was the source of the nitrate. The concentrrations of nitrate that were found in the unsaturated zone were greatly in excess of the WHO recommended limit for nitrate in drinking water. High NO₃-N/Cl ratios confirm insitu production of nitrate, and indicate that this is a natural baseline occurrence related to N-fixation. The nitrate is moving down the profile and impacts the groundwater unless it can be intercepted by plant roots. NO₃-N amounts in solution in the soil profile varied between 75 and 1000kg ha^–1 beneath trees and between 120 and 400kg ha^–1 in areas outwith tree crowns. Although these quantities of N occupy the lower end of the range of N values obtained in north American deserts, they comprise a considerable dryland resource where amounts of organic fertilizer are limited and where cost prohibits the use of commercial fertilizers. Roots of both nitrogen fixing and non-nitrogen fixing trees were deep enough to access the nitrate but the small amounts of available water at intermediate depths suggest that large scale uptake of nitrate will only be possible in the wetter zones located close to the water table. Shallow roots tended to be more heavily colonized by mycorrhizas than deeper roots but mycorrhizas were recovered from roots located 22m below ground. Tree roots and rhizobia had similar patterns of distribution. They were commonest close to the soil surface, less frequent at intermediate depths and tended to increase in frequency close to the water table.     

Nitrogen transformations and nitrous oxide flux in a tropical deciduous forest in México

Summary Emissions of nitrous oxide and soil nitrogen pools and transformations were measured over an annual cycle in two forests and one pasture in tropical deciduous forest near Chamela, México. Nitrous oxide flux was moderately high (0.5–2.5 ng cm^–2 h^–1) during the wet season and low (<0.3 ng cm^–2 h^–1) during the dry season. Annual emissions of nitrogen as nitrous oxide were calculated to be 0.5–0.7 kg ha^–1 y^–1, with no substantial difference between the forests and pasture. Wetting of dry soil caused a large but short-lived pulse of N₂O flux that accounted for <2% of annual flux. Variation in soil water through the season was the primary controlling factor for pool sizes of ammonium and nitrate, nitrogen transformations, and N₂O flux.     

Nitrogen deficiency in the york river burn,gaspé, Quebec

Visual symptoms of malnutrition associated with the unsatisfactory development of natural and planted black spruce seedlings in a 20-year-old burn suggested low supply and uptake of nitrogen, phosphorus, and possibly other nutrients as the primarily adverse factors.In order to test the hypothesis, both soil and foliage of the species there and in another climatic region were compared and the diagnosis partly confirmed. Of the elements studied (K, Mg, Ca, P, Mn, Fe, and N) only nitrogen was found to be related to needle colour and poor leader growth.A lichen crustLecidea granulosa rich in nutrients, especially nitrogen, dominates the sites. The crust decomposes very slowly and retains large proportions of available nutrients in its tissues. Incorporation of the crust in the mineral soil is suggested as a means of accelerating nutrient cycling and promoting development of future plantations.

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Sommaire Nous basant sur certains symptômes de déficiences minérales, nous avons émis l'hypothèse que la faible croissance des jeunes épinettes noires et de celles plantées dans le brûlis de 1941 de la rivière York, était surtout attribuable à la carence de l'azote et du phosphore et peut-être aussi à d'autres éléments dans le sol et les tissus. L'hypothèse a été vérifiée et partiellement confirmée. De tous les éléments étudiés (K, Mg, Ca, P, Mn, Fe et N), seul l'azote est relié à la couleur des aiguilles et à la croissance de la flèche terminale. Cette relation cependant est beaucoup plus marquée lorsque la couleur est estimée à l'aide de comparaison avec des semis recueillis sur la place même de l'étude plutôt qu'avec le guide des couleurs de Munsell.Les résultats de cette étude ont été comparés avec d'autres déjà obtenus avec l'épinette noire, ayant le même âge et croissant dans un sol de même texture mais dans des régions climatiques différentes. Même si le contenu minimum en azote d'un sol est susceptible de varier d'une région climatique à l'autre, il semblerait que la disponibilité de l'azote dans le brûlis de la rivière York est nettement insuffisante pour espérer le développement normal d'une plantation d'épinettes noires.A la suite de travaux préliminaires faits en serre, nous avons constaté que le lichenLecidea granulosa, riche en azote et qui recouvre en partie l'aire étudiée, favorisait la croissance des jeunes épinettes quand il était broyé et incorporé au sol minéral. On suggère donc, comme moyen d'amélioration du sol en vue de futures plantations, de broyer sur place ce lichen et de l'incorporer au sol.

     

Dynamics of Inorganic Nitrogen in Nitrate and Glucose-amended Alkaline–saline Soil

Induction of assimilatory NO ₃ ⁻ reduction through the application of an easily decomposable substrate in alkaline–saline soils of the former lake Texcoco (Mexico) resulted in a fast immobilization of NO ₃ ⁻ in excess of N required for metabolic activity and the release of large concentrations of NO ₂ ⁻ and smaller amounts of NH ₄ ⁺ . We postulated that this was regulated by the amounts of NO ₃ ⁻ and glucose added, and affected by the specific characteristics of soil from the former lake Texcoco. This was investigated by spiking soils of different electrolytic conductivity (EC) 56.0 dS m⁻¹ (soil A of Texcoco) and 11.6 dS m⁻¹ (soil B of Texcoco) with different concentrations of NO ₃ ⁻ and glucose while dynamics of CO₂, NH ₄ ⁺ , NO ₂ ⁻ and NO ₃ ⁻ were monitored in an aerobic incubation for 7 days. For comparison reasons (control) an agricultural soil with low EC (0.3 dS m⁻¹) was included as well. In the agricultural soil, 67% of the added glucose mineralized within 7 days, but only 15% in soil A of Texcoco and 20% in soil B of Texcoco. The application of NO ₃ ⁻ to the agricultural soil added with glucose increased cumulative production of CO₂ 1.2 times, 1.5 times in soil A of Texcoco and 1.8 times in soil B of Texcoco. Concentration of NO ₂ ⁻ increased to > 100 mg NO ₂ ⁻ -N kg⁻¹ when 1000 mg glucose-C kg⁻¹ and 500 mg NO ₃ ⁻ -N kg⁻¹ were added to soil A and B of Texcoco, but remained < 3 mg NO ₂ ⁻ -N kg⁻¹ in the agricultural soil. The ratio between the cumulative production of CO₂ and the decrease in concentration of NO ₃ ⁻ was approximately one in soil A and B of Texcoco, but 10 in the agricultural soil after 3 days. It was found that micro-organisms in the alkaline–saline soil of the former lake Texcoco were capable of immobilizing large quantities of NO ₃ ⁻ when an easy decomposable substrate was available in excess of what might be required for metabolic activity while producing large concentrations of NO ₂ ⁻ , but these phenomena were absent in an agricultural soil. In soil of Texcoco, concentrations of NO ₂ ⁻ and NH ₄ ⁺ increased with increased salinity and availability of NO ₃ ⁻ . This ability to remove large quantities of NO ₃ ⁻ under these conditions and then utilize it at a later time might benefit micro-organisms of the N limited alkaline–saline soils of Texcoco.     

Nitrogen Enrichment Accelerates Mangrove Range Expansion in the Temperate–Tropical Ecotone

Ecosystems - Climate change and nutrient enrichment are two phenomena impacting coastal ecosystems. In coastal wetlands, mangroves in temperate–tropical ecotones are encroaching on adjacent...     

Nitrogen cycling in a northern hardwood forest: Do species matter?

To investigate the influence of individual tree species on nitrogen (N) cycling in forests, we measured key characteristics of the N cycle in small single-species plots of five dominant tree species in the Catskill Mountains of New York State. The species studied were sugar maple (Acer saccharum), American beech (Fagus grandifolia), yellow birch (Betula alleghaniensis), eastern hemlock (Tsuga canadensis), and red oak (Quercus rubra). The five species varied markedly in N cycling characteristics. For example, hemlock plots consistently showed characteristics associated with "slow" N cycling, including low foliar and litter N, high soil C:N, low extractable N pools, low rates of potential net N mineralization and nitrification and low NO ₃ ^– amounts trapped in ion-exchange resin bags buried in the mineral soil. Sugar maple plots had the lowest soil C:N, and the highest levels of soil characteristics associated with NO ₃ ^– production and loss (nitrification, extractable NO ₃ ^– , and resin bag NO ₃ ^– ). In contrast, red oak plots had near-average net mineralization rates and soil C:N ratios, but very low values of the variables associated with NO ₃ ^– production and loss. Correlations between soil N transformations and litter concentrations of N, lignin, lignin:N ratio, or phenolic constituents were generally weak. The inverse correlation between net nitrification rate and soil C:N that has been reported in the literature was present in this data set only if red oak plots were excluded from the analysis. This study indicates that tree species can exert a strong control on N cycling in forest ecosystems that appears to be mediated through the quality of soil organic matter, but that standard measures of litter quality cannot explain the mechanism of control.     

AKINβ1 is Involved in the Regulation of Nitrogen Metabolism and Sugar Signaling in Arabidopsis

Sucrose non-fermenting-1-related protein kinase 1 (SnRK1) has been located at the heart of the control of metabolism and development in plants. The active SnRK1 form is usually a heterotrimeric complex. Subcellular localization and specific target of the SnRK1 kinase are regulated by specific beta subunits. In Arabidopsis, there are at least seven genes encoding beta subunits, of which the regulatory functions are not yet clear. Here, we tried to study the function of one beta subunit, AKINβ1. It showed that AKINβ1 expression was dramatically induced by ammonia nitrate but not potassium nitrate, and the investigation of AKINβ1 transgenic Arabidopsis and T-DNA insertion lines showed that AKINβ1 negatively regulated the activity of nitrate ruductase and was positively involved in sugar repression in early seedling development. Meanwhile AKINβ1 expression was reduced upon sugar treatment (including mannitol) and did not affect the activity of sucrose phos-phate synthase. The results indicate that AKINβ1 is involved in the regulation of nitrogen metabolism and sugar signaling.     

Nanjing Declaration on Nitrogen Management

The participants of the Third International Nitrogen Conference, held in Nanjing, People's Republic of China, 12-16 October 2004. AFFIRM the principles of the Millennium Development Goals and the World Summit on Sustainable Development to speedily increase access to basic human needs such as energy, water, food security and the protection of human health and biodiversity. AFFIRM the scientific findings of the International Nitrogen Conferences and the International Nitrogen Initiative (INI).     

Induction of Mutation by γ-Irradiation in the Presence of Oxygen or Nitrogen

The effect of γ-irradiation on Aspergillus nidulans genes depends on the presence of oxygen.     

Nitrogen depletion causes up-regulation of glutathione content and γ-glutamyltranspeptidase in Schizosaccharomyces pombe

This work aims to elucidate the relationship between nitrogen depletion and Glutathione (GSH) level in Schizosaccharomyces pombe. The total GSH level was much higher in the Pap1-positive KP1 cells than in the Pap1-negative TP108-3C cells, suggesting that synthesis of GSH is dependent on Pap1. When the Pap1-positive KP1 cells were transferred to the nitrogen-depleted medium, total GSH level significantly increased up to 6 h and then slightly declined after 9 h. Elevation of the total GSH level was observed to be much less with the Pap1-negative cells. However, glucose deprivation was not able to enhance the GSH level in the KP1 cells. Activity of gamma-glutamyltranspeptidase (gamma-GT), an enzyme in the first step of GSH catabolism, also increased during nitrogen depletion. The total GSH level was more significantly enhanced in the KP1 cells overexpressing gamma-GT2 than gamma-GT1 during nitrogen starvation. Reactive oxygen species (ROS) levels were not changed during nitrogen starvation in both Pap1-positive and Pap1-negative cells. Collectively, nitrogen depletion causes up-regulation of GSH synthesis and gamma-GT in a Pap1-dependent manner.     

Dynamics of Aboveground and Soil Carbon and Nitrogen Stocks and Cycling of Available Nitrogen along a Land-use Gradient in Rondônia,Brazil

High rates of deforestation in the Brazilian Amazon have the potential to alter the storage and cycling of carbon (C) and nitrogen (N) across this region. To investigate the impacts of deforestation, we quantified total aboveground biomass (TAGB), aboveground and soil pools of C and N, and soil N availability along a land-use gradient in Rondônia, Brazil, that included standing primary forest, slashed primary and secondary forest, shifting cultivation, and pasture sites. TAGB decreased substantially with increasing land use, ranging from 311 and 399 Mg ha^–1 (primary forests) to 63 Mg ha^–1 (pasture). Aboveground C and N pools declined in patterns and magnitudes similar to those of TAGB. Unlike aboveground pools, soil C and N concentrations and pools did not show consistent declines in response to land use. Instead, C and N concentrations were strongly related to percent clay content of soils. Concentrations of NO₃-N and NH₄-N generally increased in soils following slash-and-burn events along the land-use gradient and decreased with increasing land use. Increasing land use resulted in marked declines in NO₃-N pools relative to NH₄-N pools. Rates of net nitrification and N-mineralization were also generally higher in postfire treatments relative to prefire treatments along the land-use gradient and declined with increasing land use. Results demonstrate the linked responses of aboveground C and N pools and soil N availability to land use in the Brazilian Amazon; steady reductions in aboveground pools along the land-use gradient were accompanied by declines in inorganic soil N pools and transformation rates.     

Do Earthworms Have a Greater Influence on Nitrogen Dynamics Than Atmospheric Nitrogen Deposition?

Elevated levels of inorganic nitrogen (N) deposition and earthworm invasion have the potential to alter N dynamics in eastern North American temperate forests. A regional comparison was conducted across 21 sugar maple (Acer saccharum Marsh) stands in southern Ontario, where forest floor C:N ratios ranged from 17 to 38 showed that, similar to many other studies, rates of potential net mineralization and nitrification increased below a forest floor C:N ratio threshold of approximately 25 and that nitrification rates are positively correlated with foliar N concentration. However, detailed measurements at four representative stands, receiving between 9.8 and 19 kg N ha^?1 y^?1 in throughfall, showed that foliar N levels were highest at the site with the lowest N deposition. The primary difference amongst these sites was the presence of invasive earthworms. Specifically, sites without earthworms had significantly higher forest floor N with a lower C:N ratio than the sites with earthworms. There was no significant difference in the rate of sugar maple litter decomposition or chemistry amongst the sites assessed after 540 days using fine (2-mm mesh) litter bags, suggesting that differences in forest floor N levels were most likely due to consumption of litter by large earthworm species and that the lower C:N ratio of the forest floor in sites without earthworms is brought about primarily by a much longer residence time. This work supports the conclusions that forest floor N concentration (or C:N ratio) has a very strong control on N dynamics in forests, but shows that the presence of earthworms can have an impact on forest floor C:N ratio and hence N dynamics that is greater than current levels of atmospheric inorganic N deposition in temperate forests of Ontario.