Perenniporia cinereofusca sp. nov. (Polyporales,Basidiomycota) evidenced by morphological characters and phylogenetic analysis

A new Perenniporia species, P. cinereofusca, is described based on morphological and molecular characters. It is characterized by an annual growth habit, resupinate basidiocarps with gray to pale brown pore surface, tissues becoming black in 5% potassium hydroxide (KOH), a dimitic hyphal system with weakly dextrinoid skeletal hyphae and hyaline to pale yellowish, distinctly thick-walled and indextrinoid basidiospores (6.5–7.7 × 5.3–6.3 μm), and presence of dendrohyphidia and large rhomboid crystals. Both morphological and molecular evidence confirmed the placement of the new species in Perenniporia sensu stricto and showed its relationships with similar species in the genus.     

Helobdella nilae sp. nov. (Hirudinoidea: Glossiphoniidae), from the Nile Delta,Egypt

A new freshwater leech species, Helobdella nilae, is described with diagnostically a dorsal nuchal gland (scute) on somite VII, five pairs of simple crop caeca, the last pair extending posteriorly as postcaeca, five pairs of compact spherical testisacs, an unpigmented dorsal surface lacking both papillae and sensilla. The mouth is subapical and surrounded by numerous single or paired pits (pores).     

Three new asexual arthroconidial yeasts, Geotrichum carabidarum sp. nov., Geotrichum histeridarum sp. nov., and Geotrichum cucujoidarum sp. nov., isolated from the gut of insects

Twenty arthroconidial yeasts were isolated from the digestive tract of basidiome-feeding beetles and lepidopteran larvae. All of the yeasts reproduced only asexually by arthroconidia and some by endo- or blastoconidia as well. Based on the comparisons of sequences in ribosomal RNA genes and other taxonomic characteristics, the yeasts were identified as three unknown Geotrichum species. The three new species are described as Geotrichum carabidarum (NRRL Y-27727^T), G. histeridarum (NRRL Y-27729^T), and G. cucujoidarum (NRRL Y-27731^T). Phylogenetic analyses from ribosomal DNA sequences showed that members of the genus Geotrichum and related arthroconidial yeast taxa were divided into two major clades: (1) Dipodascus and Galactomyces with Geotrichum anamorphs including all the new species; and (2) Magnusiomyces with Saprochaete anamorphs. G. cucujoidarum formed a subclade with G. fermentans and Geotrichum sp. Y-5419, while the two closely related species, G. carabidarum and G. histeridarum, represent a new basal subclade in the clade of Geotrichum and its teleomorphs.     

Kwoniella mangroviensis gen. nov., sp.nov. (Tremellales, Basidiomycota), a teleomorphic yeast from mangrove habitats in the Florida Everglades and Bahamas

Mangrove forests inhabit the shoreline regions of tropical and subtropical marine habitats, where they are the basis of a multi-trophic level food web that drives the shellfish and fisheries industries. Yeasts, and other fungi, have significant roles in these ecosystems as they decompose plant organic material and serve as a food source for small invertebrates. Studies designed to examine yeast communities of mangrove regions of the Florida Everglades and the Bahamas demonstrated the repeated presence of an undescribed teleomorphic basidiomycetous yeast. The yeast is heterothallic, with a sexual cycle that can be observed on artificial media. Mating between compatible pairs produces polymorphic basidia. Some basidia are globose, ovoid or lageniform, with longitudinal to oblique and transverse septa, whereas other basidia are navicular with one to three transverse septa. Basidiocarps and ballistoconidia are absent. Molecular sequence analysis of a partial region (D1/D2 domains) of the large subunit rRNA demonstrated that the yeast is phylogenetically distinct from other teleomorphic Tremellales with close relationships to the anamorphic species Cryptococcus dejecticola, Cryptococcus bestiolae and Bullera dendrophila. The molecular and phenotypic data indicate that this teleomorph should be classified in a novel genus. Therefore, Kwoniella mangroviensis gen. nov., sp. nov. (Type strain CBS 8507), is proposed.     

Iningainema pulvinus gen nov., sp nov. (Cyanobacteria,Scytonemataceae) a new nodularin producer from Edgbaston Reserve,north-eastern Australia

A new nodularin producing benthic cyanobacterium Iningainema pulvinus gen nov., sp nov. was isolated from a freshwater ambient spring wetland in tropical, north-eastern Australia and characterised using combined morphological and phylogenetic attributes. It formed conspicuous irregularly spherical to discoid, blue-green to olive-green cyanobacterial colonies across the substratum of shallow pools. Morphologically Iningainema is most similar to Scytonematopsis Kiseleva and Scytonema Agardh ex Bornet & Flahault. All three genera have isopolar filaments enveloped by a firm, often layered and coloured sheath; false branching is typically geminate, less commonly singly. Phylogenetic analyses using partial 16S rRNA sequences of three clones of Iningainema pulvinus strain ES0614 showed that it formed a well-supported monophyletic clade. All three clones were 99.7–99.9% similar, however they shared less than 93.9% nucleotide similarity with other cyanobacterial sequences including putatively related taxa within the Scytonemataceae. Amplification of a fragment of the ndaF gene involved in nodularin biosynthesis from Iningainema pulvinus confirmed that it has this genetic determinant. Consistent with these results, analysis of two extracts from strain ES0614 by HPLC–MS/MS confirmed the presence of nodularin at concentrations of 796 and 1096 μg g⁻¹ dry weight. This is the third genus of cyanobacteria shown to produce the cyanotoxin nodularin and the first report of nodularin synthesis from the cyanobacterial family Scytonemataceae. These new findings may have implications for the aquatic biota at Edgbaston Reserve, a spring complex which has been identified as a priority conservation area in the central Australian arid and semiarid zones, based on patterns of endemicity.     

Tahibacter aquaticus gen. nov., sp. nov., a new gammaproteobacterium isolated from the drinking water supply system of Budapest (Hungary)

Three Gram-stain negative, aerobic, non-motile, non-spore-forming, rod-shaped bacterial strains, PYM5-11^T, RaM5-2 and PYM5-8, were isolated from the drinking water supply system of Budapest (Hungary) and their taxonomic positions were investigated by a polyphasic approach. All three strains grew optimally at 20-28 °C and pH 5-7 without NaCl. The G+C content of the DNA of the type strain was 65.4 mol%. On the basis of 16S rRNA gene sequence analysis, the isolates showed 94.5-94.9% sequence similarity to the type strain of Dokdonella koreensis and a similarity of 93.0-94.1% to the species of the genera Aquimonas and Arenimonas. The major isoprenoid quinone of the strains was ubiquinone Q-8. The predominant fatty acids were iso-C_15:0, iso-C_17:1ω9c, C_16:1ω7c, and C_16:0. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphatidylmonomethylethanolamine, as well as several unidentified aminolipids and phospholipids were present. The 16S rRNA gene sequence analysis, the predominant fatty acids, the polar lipid composition, RiboPrint patterns, physiological and biochemical characteristics showed that the three strains were related but distinct from the type strains of the four recognized species of the genus Dokdonella, and indicated that the strains represented a new genus within the Gammaproteobacteria. The strain PYM5-11 (=DSM 21667^T=NCAIM B 02337^T) is proposed as the type strain of a new genus and species, designated as Tahibacter aquaticus gen. nov., sp. nov.     

A new genus, Thailepidonia gen. nov., based on T. yoshiyasui sp. nov. (Lepidoptera, Lecithoceridae) from Thailand

A new genus, Thailepidonia gen. nov. of the family Lecithoceridae, is described based on a new species, T. yoshiyasui sp. nov. from Thailand.     

The occurrence and structure of apparently bisexual flowers in the date palm, Phoenix dactylifera L. (Arecaceae)

Individuals of Phoenix dactylifera L. have expanded pistillodes or pseudocarpels in staminate flowers. These pseudocarpels are located in the centre of the male flowers and are surrounded by stamens. The gynoecium has the characteristic three carpellate arrangement commonly found in female date palm flowers. Pseudocarpels from male flower buds can expand into parthenocarpic fruit. Histology of the expanded pistillodes or pseudotarpels is similar to that of normal carpels from pistillate plants. These pseudocarpels lack ovules. Nutrient medium containing 10 mg 1^-1 of 2,4-dichlorophenoxyacetic acid or p-chlorophenylacetic acid and 0.3% activated neutralized charcoal enhanced the development and outgrowth of the pseudocarpels of cultured male flowers.     

Consequence of salinity and excess boron on growth, evapotranspiration and ion uptake in date palm (Phoenix dactylifera L., cv. Medjool)

Patches of common juniper (Juniperus communis L.) shrubs potentially facilitate the formation of fertile islands in heath tundra ecosystems thereby influencing the long-term resilience of these ecosystems. Although the role of juniper in the formation of such ‘islands of fertility’ has been studied in semiarid landscapes, there has been little attention paid to the importance of juniper in other ecosystems. In this study we contrast the soil fertility and rates of N fixation under juniper shrubs with that in open heath tundra in northern Sweden. Plots were established at several individual sites in alpine heath tundra in Northern Sweden and mineral soils to a depth of 10 cm were characterized for available N and P and total C, N, P, Ca, Mg, K, Fe, Mn, Zn, and Cu. Nitrogen fixation rates were measured by acetylene reduction in feather mosses under juniper canopies and contrasted with N fixation in both feather mosses and surface soils in the open heath. Soils under juniper had concentrations of total P greatly in excess of P in open heath, furthermore, juniper islands had the highest concentrations of bioavailable P. Nitrogen fixation rates in the feather moss Pleurozium schreberi (Bird.) Mitt were approximately 150 μmol acetylene reduced m⁻² d⁻¹ under the juniper canopy compared to less than 10 μmol acetylene reduced m⁻² d⁻¹ in the open heath. Feather mosses under the juniper canopy also fixed N at a significantly higher rate (on an aerial basis) than that of surface cores from the open heath that included lichen, mosses, and soil crusts. Juniper facilitates the formation of islands of soil fertility that may in turn facilitate the growth of other plants and positively influence the long term recovery of heath tundra ecosystems following disturbance.     

Spirobolbolaimus bathyalis,gen. nov., sp. nov. (Nematoda,Microlaimidae) from the Mediterranean (Calvi)

Spirobolbolaimus bathyalis gen. nov., sp. nov. is described from the continental slope off Calvi (Mediterranean). The new genus Spirobolbolaimus belongs to the Microlaimidae Micoletzky, 1922 and is closely related to the genus Bolbolaimus Cobb, 1920. It can be differentiated from Bolbolaimus by its multispiral amphideal fovea and by its six rows of postamphideal setae.     

Yakushimabryum longissimum (Pylaisiadelphaceae) gen. & sp. nov., from the Yakushima Island,Japan

Abstract

Yakushimabryum longissimum gen. & sp. nov. (Pylaisiadelphaceae, Musci), is described from Yakushima Island, Japan, on the basis of morphology and rbcL data. It is characterized by more or less glossy, yellowish green living plants, naked dormant branch buds, absence of costa in the leaves, smooth and linear leaf lamina cells, alar groups composed of a number of quadrate cells arranged in a scalariform manner, ascending branches that are often elongate into slender tips, and filamentous gemmae consisting of smooth, long-rectangular cells. Molecular phylogenetic analyses suggest an affinity neither to Clastobryopsis nor Gammiella, both of which grow in similar habitats and share alar morphology and shape of propagules, but to Isocladiella and Isopterygium, both of which have filamentous pseudoparaphyllia and different types of propagules. A key to the Japanese genera of Pylaisiadelphaceae is provided.     

Molecular phylogeny and taxonomic revision of the genus Wittrockiella (Pithophoraceae,Cladophorales), including the descriptions of W. australis sp. nov. and W. zosterae sp. nov.

Wittrockiella is a small genus of filamentous green algae that occurs in habitats with reduced or fluctuating salinities. Many aspects of the basic biology of these algae are still unknown and the phylogenetic relationships within the genus have not been fully explored. We provide a phylogeny based on three ribosomal markers (ITS, LSU, and SSU rDNA) of the genus, including broad intraspecific sampling for W. lyallii and W. salina, recommendations for the use of existing names are made, and highlight aspects of their physiology and life cycle. Molecular data indicate that there are five species of Wittrockiella. Two new species, W. australis and W. zosterae, are described, both are endophytes. Although W. lyallii and W. salina can be identified morphologically, there are no diagnostic morphological characters to distinguish between W. amphibia, W. australis, and W. zosterae. A range of low molecular weight carbohydrates were analyzed but proved to not be taxonomically informative. The distribution range of W. salina is extended to the Northern Hemisphere as this species has been found in brackish lakes in Japan. Furthermore, it is shown that there are no grounds to recognize W. salina var. kraftii, which was described as an endemic variety from a freshwater habitat on Lord Howe Island, Australia. Culture experiments indicate that W. australis has a preference for growth in lower salinities over full seawater. For W. amphibia and W. zosterae, sexual reproduction is documented, and the split of these species is possibly attributable to polyploidization.     

Heterorhabditidoides chongmingensis gen. nov., sp. nov. (Rhabditida: Rhabditidae), a novel member of the entomopathogenic nematodes

During a recent soil sample survey in Eastern China, a new entomopathogenic nematode species, collected from the Chongming Islands in the southern-eastern area of Shanghai, was discovered. Morphological characteristics of different developmental stages of the nematode combined with molecular data showed that this nematode is a new genus of Rhabditidae, and described as Heterorhabditidoides chongmingensis gen. nov., sp. nov., for that it shares more morphological characteristics with heterorhabditids than with steinernematids. For males, the papillae formula of bursa is 1, 2, 3, 3, with constant papillae number in the terminal group, stoma tubular-shaped and about 1.5 head width; cheilorhabdions cuticularized, esophageal collar present and long, median bulb present. For infective juveniles, EP = 90 (80-105) μm, ES = 104 (92-120) μm, tail length = 111 (89-159) μm, and a = 19.1 (15-21). The percentages of the nucleotides A, T, C and G in the ITS1 regions of the new species are significantly different from those of heterorhabditids and other rhabditids. Molecular phylogenetic trees based on 18S rDNA and the internal transcribed spacer (ITS) sequences data revealed that the new entomopathogenic nematode species forms a monophyletic group, which is a sister group of the clade comprised of some genera of Rhabditidae.     

Effect of water deficit on the cell wall of the date palm (Phoenix dactylifera ‘Deglet nour’, Arecales) fruit during development

Date palm (Phoenix dactylifera) is an important crop providing a valuable nutrition source for people in many countries including the Middle East and North Africa. In recent years, the amount of rain in North Africa and especially in the Tunisian palm grove areas has dropped significantly. We investigated the growth and cell wall remodelling of fruits harvested at three key development stages from trees grown with or without water supply. During development, cell wall solubilization and remodelling was characterized by a decrease of the degree of methylesterification of pectin, an important loss of galactose content and a reduction of the branching of xylan by arabinose in irrigated condition. Water deficit had a profound effect on fruit size, pulp content, cell wall composition and remodelling. Loss of galactose content was not as important, arabinose content was significantly higher in the pectin‐enriched extracts from non‐irrigated condition, and the levels of methylesterification of pectin and O‐acetylation of xyloglucan were lower than in irrigated condition. The lower levels of hydrophobic groups (methylester and O‐acetyl) and the less intensive degradation of the hydrophilic galactan, arabinan and arabinogalactan in the cell wall may be implicated in maintaining the hydration status of the cells under water deficit.     

Samuraia tabularasa gen. nov., sp. nov. (Cnidaria,Hydrozoa, Hydrocorynidae), an intertidal hydroid from the Gulf of California,Mexico

Samuraia tabularasa, the samurai hydroid, a previously unreported genus and species of athecate hydrozoan, family Hydrocorynidae, is described, based upon field and laboratory observations. Colonies live attached to rocky substrates in the middle of the intertidal zone in the northern and central Gulf of California, Mexico. The principal characters that allow this species to be referred to a new genus are associated with its mode of sexual reproduction by eumedusoids that can remain attached to the colony, or be released as ephemeral, rudimentary structures. This is in contrast to the feeding, free medusae produced by the two species of the other genus, Hydrocoryne, in the family Hydrocorynidae.     

Ferribacterium limneticum, gen. nov., sp. nov., an Fe(III)-reducing microorganism isolated from mining-impacted freshwater lake sediments

A dissimilatory Fe(III)-reducing bacterium was isolated from mining-impacted lake sediments and designated strain CdA-1. The strain was isolated from a 4-month enrichment culture with acetate and Fe(III)-oxyhydroxide. Strain CdA-1 is a motile, obligately anaerobic rod, capable of coupling the oxidation of acetate and other organic acids to the reduction of ferric iron. Fe(III) reduction was not observed using methanol, ethanol, isopropanol, propionate, succinate, fumarate, H₂, citrate, glucose, or phenol as potential electron donors. With acetate as an electron donor, strain CdA-1 also grew by reducing nitrate or fumarate. Growth was not observed with acetate as electron donor and O₂, sulfoxyanions, nitrite, trimethylamine N-oxide, Mn(IV), As(V), or Se(VI) as potential terminal electron acceptors. Comparative 16 S rRNA gene sequence analyses show strain CdA-1 to be most closely related (93.6% sequence similarity) to Rhodocyclus tenuis. However, R. tenuis did not grow heterotrophically by Fe(III) reduction, nor did strain CdA-1 grow photrophically. We propose that strain CdA-1 represents a new genus and species, Ferribacterium limneticum. Strain CdA-1 represents the first dissimilatory Fe(III) reducer in the β subclass of Proteobacteria, as well as the first Fe(III) reducer isolated from mine wastes. Received: 14 July 1998 / Accepted: 14 December 1998     

Ligulate Desmarestia (Desmarestiales,Phaeophyceae) revisited: D. japonica sp. nov. and D. dudresnayi differ from D. ligulata

The phylogeny of ligulate and sulfuric‐acid containing species of Desmarestia, occurring worldwide from polar to temperate regions, was revised using a multigenic and polyphasic approach. Sequence data, gametophyte characteristics, and sporophyte morphology support reducing a total of 16 taxa to four different species. (1) D. herbacea, containing broad‐bladed and highly branched forms, has dioecious gametophytes. The three other species have monoecious gametophytes: (2) D. ligulata which is profusely branched and, except for one subspecies, narrow‐bladed, (3) Japanese ligulate Desmarestia, here described as D. japonica sp. nov., which is morphologically similar to D. ligulata but genetically distant from all other ligulate taxa. This species may have conserved the morphology of original ligulate Desmarestia. (4) D. dudresnayi, including unbranched or little branched broad‐bladed taxa. A figure of the holotype of D. dudresnayi, which was lost for decades, was relocated. The taxonomy is complemented by a comparison of internal transcribed spacer and cytochrome c oxidase subunit I (cox1) as potential barcode loci, with cox1 offering good resolution, reflecting species delimitations within the genus Desmarestia.