Microscopy electron scanning of fossilized sickle-cells

In a microscopica electronic scanning follow-up study on human skeletons from the Hellenistic Period in the Arab-Persian Gulf, fossilized sickle-cells were found in the bone marrow of one of the excavated skeletons. The ultrastructure of these cells was compared to that of fossilized normal red blood cells of other skeletons from the same site, and to similar pseudo-pathological structures. The finding of fossilized evidence of sickle-cell anemia of that date is withoutprecedent, and makes an evaluation of related gross-anatomical skeletal changes possible.     

粪化石在古生态研究中的应用综述

粪化石(coprolite)是石化的动物粪便,而广义上粪化石(bromalite)是石化的动物消化物、排泄物和排出物的总称。作为一类重要遗迹化石,粪化石蕴含了大量实体化石难以提供的生物学信息,为古生态学研究提供以下依据:1)粪化石作为媒介帮助理解远古动物的行为习性、消化系统的结构和功能、食谱特征以及古生态系统食物链/食物网;2)粪化石中保存的古寄生虫线索能有效地解读古生物寄生关系和某些常见肠道寄生虫的起源问题;3)新生代以来古人类粪化石证据可以直接解开早期古人类的食谱、疾病特征及其迁移路径;4)中、新生代以来的粪化石中保存的植物残留信息(孢粉化石和植硅体)是重建古植被面貌、恢复古气候和探索早期动植物关系的重要依据。本文回顾了粪化石研究历史,并针对粪化石在上述古生态各研究方向的最新进展进行了系统总结和综述,认为粪化石可有效解读古生态。文章最后对粪化石的最新研究技术方法(如CT扫描技术)及未来发展方向进行了展望。     

Feulgen-positive staining of the cell nuclei in fossilized leaf and fruit tissues of the Lower Eocene Myrtaceae

The Feulgen reaction and the staining of preparations with two DNA-specific fluorochromes, Hoechst 33258 and 4',6-diamidino-2-fenilindol (DAPI), were used to study the preservation of DNA in the fossilized leaf and fruit tissues of the Lower Eocene Myrtaceae, Paramyrtacicarpus plurilocularis and Paramyrtaciphyllum agapovii collected in Yakutia (Siberia, Russia). It was shown that chromatin structures of the fossilized plants form stable red-purple complexes with the Schiff's fuchsin sulphuric acid reagent in situ . This coloration is specific for DNA, in particular, for the deoxyribose residues. It means that the cell nuclei of these 53–55 Myr old plants preserve a part of the deoxyribose backbone of DNA molecules. On the other hand, there was no, or only a very weak, staining of the cell nucleus with fluorochromes DAPI or Hoechst 33258, which specifically bind to the double-stranded DNA and do not bind to either the single-stranded DNA or RNA molecules. The stainability of fossil plant cell preparations with alcian blue shows that there are also polysaccharides containing carboxyl groups in the cell walls of fossilized leaf and fruit tissues of the Lower Eocene Myrtaceae.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 150 , 315–321.     

Turtle Shell Impression in a Coprolite from South Carolina,USA

Coprolites (fossilized feces) can preserve a wide range of biogenic components. A mold of a hatchling turtle partial shell (carapace) referable to Taphrosphys sulcatus is here identified within a coprolite from Clapp Creek in Kingstree, Williamsburg County, South Carolina, USA. The specimen is the first-known coprolite to preserve a vertebrate body impression. The small size of the turtle shell coupled with the fact that it shows signs of breakage indicates that the turtle was ingested and that the impression was made while the feces were still within the body of the predator. The detailed impression could only have survived the act of defecation if the section of bony carapace was voided concurrently and remained bonded with the feces until the latter lithified. Exceptionally, the surface texture of the scutes is preserved, including its finely pitted embryonic texture and a narrow perimeter of hatchling scute texture. The very small size of the shell represented by the impression makes it a suitable size for swallowing by any one of several large predators known from this locality. The coprolite was collected from a lag deposit containing a temporally mixed vertebrate assemblage (Cretaceous, Paleocene and Plio-Pleistocene). The genus Taphrosphys is known from both sides of the Cretaceous–Paleogene (K–Pg) boundary so, based on the size of the coprolite and the locally-known predators, the juvenile turtle could have been ingested by a mosasaur, a crocodylian, or a theropod dinosaur. Unlike mosasaurs and theropod dinosaurs, crocodylian stomachs have extremely high acid content that almost always dissolves bone. Therefore, the likely predator of this turtle was a mosasaur or a (non-avian or avian) theropod dinosaur.     

Exceptional preservation of nerve and muscle tissues in Late Devonian placoderm fish and their evolutionary implications

In this paper, we show exceptional three-dimensionally preserved fossilized muscle tissues in 380–384Myr old placoderm fish (Late Devonian), offering new morphological evidence supporting the hypothesis that placoderms are the sister group to all other gnathostomes. We describe the oldest soft tissue discovered in gnathostomes, which includes striated muscle fibres, circulatory and nerve tissues, preserved as phosphatized structures precipitated by microbial infilling of small, protected areas under the headshield of the arthrodire, Eastmanosteus calliaspis. Muscle impressions have also been found in the ptyctodontid, Austroptyctodus gardineri. The specimens display primitive vertebrate muscle structures; in particular, shallow W-shaped muscle blocks such as those observed in lampreys. New information from fossilized soft tissues thus elucidates the affinities of the placoderms and provides new insights into the evolution and radiation of gnathostomes.     

Ostracoden (O. Myodocopida) mit Weichkörper-Erhaltung aus der Unter-Trias von Spitzbergen

A new myodocopid ostracode subfamily (Triadocypridininae) is described from the Lower Triassic (Spathian) from W-Spitsbergen. All of the 60 specimens obtained are complete carapaces. The original calcium carbonate and the chitin of the ostracodes are replaced by apatite resulting in some specimens in a preservation of the appendage structures in minute detail. Parts of the 1st and 2nd antenna, the 2nd maxilla and the 2nd thoracopode are well preserved. Some specimens show characteristic gill-like structures with three lobes sitting posterior on each side of the body. In one specimen the lateral eye is preserved. The fossilized appendage structures, described for the first time, are almost identical with those known from recent species of this family. The environment and the secondary phosphatization leading to this extraordinary preservation is discussed.     

A new actinomycete from a Guadalupian vertebrate coprolite from Brazil

Coprolites (fossil feces) are important sources of evidence of ancient food webs and ecosystems. Actinomycetes are a fundamental component in the decay of organic matter, and serve as catalysts for nutrient cycles. Recently, gas vesicles filled with numerous verrucose colonies of substrate mycelium of an actinomycete were discovered inside a fossilized spiral amphipolar fish coprolite recovered from mid–Permian deposits of Brazil. These colonies are composed of masses of substrate hyphae, some of which are undergoing segmentation. Arising from the colonies are chains of spores separated by narrow, elongate connectives. The fossil actinomycete is described below as Palaeostromatus diairetus gen. et sp. nov. and represents the oldest known actinomycete associated with vertebrate deposits. Since the colonies occur only inside the coprolite, either Palaeostromatus diairetus gen. et sp. nov. was part of the gut flora or it was acquired from a food source. The only other remains in the coprolite are eighteen paleoniscoid fish scales, which suggests that the producer was a carnivorous/omnivorous fish. This is the oldest record of a direct interaction between vertebrates and actinomycetes.     

Evidence for Fossilized Subsurface Microbial Communities at the TAG Hydrothermal Mound

Scanning electron microscope examinations have revealed fossilized cell-like structures randomly distributed in near-surface oxidized deposits of red and gray Fe-rich chert and Fe-Si oxyhydroxides of the Trans-Atlantic Geotraverse (TAG) hydrothermal mound, Mid-Atlantic Ridge at 26°08'N. Chemically, these structures are carbon-based with the morphology of half-spheroids that are 2 to 3 w m in diameter and are mostly arranged in the form of clusters and long thread-like cellular masses that resemble single-celled microorganisms. The wide range of intracrystalline silica concentration, which seems to replace the original chemistry, suggests that the microorganisms were subjected to various degrees of silica mineralization, which was probably controlled by the thermal development of this hydrothermal site.     

The nature and origin of nucleus‐like intracellular inclusions in Paleoproterozoic eukaryote microfossils

The well‐known debate on the nature and origin of intracellular inclusions (ICIs) in silicified microfossils from the early Neoproterozoic Bitter Springs Formation has recently been revived by reports of possible fossilized nuclei in phosphatized animal embryo‐like fossils from the Ediacaran Doushantuo Formation of South China. The revisitation of this discussion prompted a critical and comprehensive investigation of ICIs in some of the oldest indisputable eukaryote microfossils—the ornamented acritarchs Dictyosphaera delicata and Shuiyousphaeridium macroreticulatum from the Paleoproterozoic Ruyang Group of North China—using a suite of characterization approaches: scanning electron microscopy (SEM), transmission electron microscopy (TEM), and focused ion beam scanning electron microscopy (FIB‐SEM). Although the Ruyang acritarchs must have had nuclei when alive, our data suggest that their ICIs represent neither fossilized nuclei nor taphonomically condensed cytoplasm. We instead propose that these ICIs likely represent biologically contracted and consolidated eukaryotic protoplasts (the combination of the nucleus, surrounding cytoplasm, and plasma membrane). As opposed to degradational contraction of prokaryotic cells within a mucoidal sheath—a model proposed to explain the Bitter Springs ICIs—our model implies that protoplast condensation in the Ruyang acritarchs was an in vivo biologically programmed response to adverse conditions in preparation for encystment. While the discovery of bona fide nuclei in Paleoproterozoic acritarchs would be a substantial landmark in our understanding of eukaryote evolution, the various processes (such as degradational and biological condensation of protoplasts) capable of producing nuclei‐mimicking structures require that interpretation of ICIs as fossilized nuclei be based on comprehensive investigations.     

Fossilized Life in Subseafloor Ultramafic Rocks

Ultramafic rocks are hypothesized to support a subseafloor hydrogen-driven biosphere because of extensive production of bioavailable energy sources like H₂ or CH₄ from fluid-rock interactions. Hence, the apparent lack of microbial remains in subseafloor ultramafic rocks, in contrast to their frequent observation in subseafloor basalts, is somewhat of a paradox. Here we report fossilized microbial remains in aragonite veins in ultramafic rocks from the 15°20′N Fracture Zone area on the Mid-Atlantic Ridge (MAR), collected during Ocean Drilling Program (ODP) Leg 209. The microbial remains consist of filamentous structures associated with biofilms. The young age (<1 Myr) and absence of diagenesis result in fossilized microbial communities with a pristine composition characterized by carbonaceous matter (CM) and the enrichment in trace elements such as Ni, Co, Mo and Mn. Our study confirms the presence of the hypothesized deep subseafloor biosphere hosted in ultramafic rocks. We further show that host rock composition may influence the microbial elemental composition, which is recorded during the fossilization.     

Chemical evidence of preserved collagen in 54-million-year-old fish vertebrae

Collagens are the most abundant proteins in the animal kingdom. They form the structural framework of connective tissues such as bones, tendons and skin, and play important biomechanical role in supporting tissue functions. The preservation of collagen in deep time is a topic of intense debate. Here we provide indisputable evidence for the presence of collagen in early Eocene fish vertebrae using online pyrolysis comprehensive two dimensional gas chromatography time-of-flight mass spectrometry (py-GC×GC-TOFMS) and immunofluorescence analysis. The presence of cyclic dipeptides such as diketodipyrrole, 2,5-diketopiperazine of proline-proline and 2,5-diketopiperazine of proline-glycine along with other nitrogen-bearing molecules in the pyrolysis products of the studied fossils unequivocally demonstrate that collagen can withstand degradation and diagenetic alteration. Immunofluorescence study also confirms the presence of collagen-I in the fossilized fish vertebrae. Contrary to common opinion, the present findings suggest that the preservation of collagen in fossilized soft tissues is not rare. We propose that one of the essential factors controlling preservation of collagen is the establishment of a suitable microenvironment within the fossil, inhibiting diagenetic alteration including microbial decay.     

Fossilized microorganisms associated with zeolite-carbonate interfaces in sub-seafloor hydrothermal environments

In this paper we describe carbon-rich filamentous structures observed in association with the zeolite mineral phillipsite from sub-seafloor samples drilled and collected during the Ocean Drilling Program (ODP) Leg 197 at the Emperor Seamounts. The filamentous structures are ~5 µm thick and ~100–200 µm in length. They are found attached to phillipsite surfaces in veins and entombed in vein-filling carbonates. The carbon content of the filaments ranges between ~10 wt% C and 55 wt% C. They further bind to propidium iodide (PI), which is a dye that binds to damaged cell membranes and remnants of DNA.
Carbon-rich globular microstructures, 1–2 µm in diameter, are also found associated with the phillipsite surfaces as well as within wedge-shaped cavities in phillipsite assemblages. The globules have a carbon content that range between ~5 wt% C and 55 wt% C and they bind to PI. Ordinary globular iron oxides found throughout the samples differ in that they contain no carbon and do not bind to the dye PI. The carbon-rich globules are mostly concentrated to a film-like structure that is attached to the phillipsite surfaces. This film has a carbon content that ranges between ~25 wt% C and 75 wt% C and partially binds to PI. EDS analyses show that the carbon in all structures described are not associated with calcium and therefore not bound in carbonates. The carbon content and the binding to PI may indicate that the filamentous structures could represent fossilized filamentous microorganisms, the globules could represent fossilized microbial cells and the film-like structures could represent a microbially produced biofilm.
Our results extend the knowledge of possible habitable niches for a deep biosphere in sub-seafloor environments and suggests, as phillipsite is one of the most common zeolite mineral in volcanic rocks of the oceanic crust, that it could be a common feature in the oceanic crust elsewhere.     

Sex- and concentration-dependent effects of predator feces on seasonal regulation of body mass in the bank vole Clethrionomys glareolus

Increased perception of predation risk can cause changes in activity, feeding and reproductive behavior in a wide range of taxa. Many small mammals in the temperate zone exhibit fluctuations in body mass in response to changing photoperiod. Bank voles lose body mass in winter which they regain when photoperiod increases in the spring. To determine if predation risk affects seasonal changes in body mass (BM), bank voles were exposed to two concentrations (low: LC and high: HC) of weasel feces. Food intake (FI) and daily energy expenditure (DEE) were measured to establish if differences in body mass were due to adjustment in energy intake or expenditure. Fecal corticosterone (CORT) was measured to assess whether the voles had detected and responded to predator feces as a physiological stressor. Voles of both sexes had higher levels of fecal CORT in the groups exposed to weasel feces compared to controls. Voles responded to the predator feces in a sex- and concentration-dependent manner. Males responded to LC feces by gaining less mass following the change in photoperiod. This was mediated by reduced FI and higher DEE. Female voles also gained less BM in response to HC feces, but increased both FI and DEE. We hypothesize that males may gain a short-term advantage by lowering BM in response to predation risk, which may be regained without affecting reproductive success. The consequences of mass loss in females may be more significant as this may delay the onset of breeding or reduce the size or number of young, thereby negatively affecting breeding success.     

On the purported presence of fossilized collagen fibres in an ichthyosaur and a theropod dinosaur

Since the discovery of exceptionally preserved theropod dinosaurs with soft tissues in China in the 1990s, there has been much debate about the nature of filamentous structures observed in some specimens. Sinosauropteryx was the first non‐avian theropod to be described with these structures, and remains one of the most studied examples. Despite a general consensus that the structures represent feathers or feather homologues, a few identify them as degraded collagen fibres derived from the skin. This latter view has been based on observations of low‐quality images of Sinosauropteryx, as well as the suggestion that because superficially similar structures are seen in Jurassic ichthyosaurs they cannot represent feathers. Here, we highlight issues with the evidence put forward in support of this view, showing that integumentary structures have been misinterpreted based on sedimentary features and preparation marks, and that these errors have led to incorrect conclusions being drawn about the existence of collagen in Sinosauropteryx and the ichthyosaur Stenopterygius. We find that there is no evidence to support the idea that the integumentary structures seen in the two taxa are collagen fibres, and confirm that the most parsimonious interpretation of fossilized structures that look like feather homologues in Sinosauropteryx is that they are indeed the remains of feather homologues.     

Formation of mineral phosphate microtubes in the presence of halophilic cyanobacteriumMicrocoleus chthonoplastes

In a culture of filamentous cyanobacteriumMicrocoleus chthonoplastes under high phosphorus content and the presence of NaF, formation of aggregated microtubes of 0.8–1.0 m in diameter was obtained. Microtubes contain calcium and phosphorus. These filamentous structures do not represent fossilized bacteria.     

The controlling factors limiting maximum body size of insects

The purpose of this study is to consider the controlling factors limiting maximum body size of insects. For this analysis, we set up and quantitatively verify the following working hypothesis: insect body sizes can be explained only by the historical changes in the oxygen supply. The present study focuses on the body size of the Protodonata and Odonata. The amount of oxygen needed and that of oxygen entering the insect body was calculated using allometric equations. The theoretical maximum sizes at each geologic time were estimated from palaeo‐atmospheric oxygen partial pressure and compared with the maximum size of known fossilized insects. The historical change in fossilized insect sizes was much larger than that in theoretical sizes. Additionally, from the Jurassic, despite an increase in the partial pressure of oxygen, which would theoretically increase maximum size, the maximum size of fossilized insects became smaller. These findings are inconsistent with the expectations of the working hypothesis. Oxygen supply is likely to partially limit the maximum size of insects with additional factors.     

Fossilized fungi as evidence of continental drift

According to Wegener (1912), about 200 million years ago the once unitary land mass that he named Pangea, became fragmented into the several continents. Subsequently these continents have continued to drift.The present account deals with the occurrence of fossilized fungal remains in Chattanooga shale and such fossils are interpreted as evidence of the occurrence of continental drift. Chattanooga shale consists of two materials, shale and the highly carbonized remains of a floating, aquatic, green plant, Conodontophyta chattanoogae, that now is an extinct, nonpetrified fossil. The remains of this fossil became compressed between layers of finegrained shale. When a piece of shale is struck with a hammer it breaks apart at the bedding planes and thus exposes fossilized Conodontophyta tissues. By examination with a dissecting microscope, the fungal remains may be seen to occur on the Conodontophyta tissues. Fragments of the carbonized tissues are filled with hyphae and with dark fungal nodules. When these nodules are removed with a dissecting needle tipped with Canada balsam and are mounted on a microscope slide, and pressure is applied to the coverglass, the nodules break apart. The parts consist of hyphae, spores, and ascocarps. These fungi are like some of the species presently in soils of the several continents. Fossil fungi as well as present-day widely distributed ones therefore may be regarded plausibly as evidence of the occurrence of continental drift.     

Metabolism of prostacyclin in rat.

Following a single intravenous administration of [11-3H]prostacyclin in rat, 77% of the administered dose was excreted within 3 days with 33% in urine and 44% in feces. Urinary metabolites were accumulated by chronic intravenous infusions of [11-3H]prostacyclin for 14 days. The drug was extensively metabolized and the structures of seven metabolites were elucidated by combined gas chromatography and mass spectrometry. The urinary products include the dinor and 19-hydroxy dinor derivatives of 6-keto-PGF1alpha and 13,14-dihydro-6,15-diketo-PGF1alpha, omega-hydroxy and omega-carboxyl dinor derivates of dihydro-6,15-diketo-PGF1alpha, and a dihydrodiketotetranordicarboxylic acid. The metabolic pathways of PGI2 in rat are similar to that of PGF2alpha.     

Morphological and geochemical evidence of eumelanin preservation in the feathers of the Early Cretaceous bird, Gansus yumenensis

Recent studies have shown evidence for the preservation of colour in fossilized soft tissues by imaging melanosomes, melanin pigment containing organelles. This study combines geochemical analyses with morphological observations to investigate the preservation of melanosomes and melanin within feathers of the Early Cretaceous bird, Gansus yumenensis. Scanning electron microscopy reveals structures concordant with those previously identified as eumelanosomes within visually dark areas of the feathers but not in lighter areas or sedimentary matrices. Fourier transform infrared analyses show different spectra for the feathers and their matrices; melanic functional groups appear in the feather including carboxylic acid and ketone groups that are not seen in the matrix. When mapped, the carboxylic acid group absorption faithfully replicates the visually dark areas of the feathers. Electron Paramagnetic Resonance spectroscopy of one specimen demonstrates the presence of organic signals but proved too insensitive to resolve melanin. Pyrolysis gas chromatography mass spectrometry shows a similar distribution of aliphatic material within both feathers that are different from those of their respective matrices. In combination, these techniques strongly suggest that not only do the feathers contain endogenous organic material, but that both geochemical and morphological evidence supports the preservation of original eumelanic pigment residue.     

On the identification of feather structures in stem-line representatives of birds: evidence from fossils and actuopalaeontology

Dinosaurs with fossilized filamentous integument structures are usually preserved in a highly flattened state. Several different feather types have been described on this basis, but the two-dimensional preservation of specimens during fossilization makes the identification of single feather structures difficult due to overlapping feather structures in vivo. Morphological comparison with the diversity of recent feather types is therefore absolutely vital to avoid misinterpretation. To simulate the preservation process, a cadaver of recent Carduelis spinus (European siskin) was flattened in a printing press. Afterwards, the structure of the plumage was compared with the morphology of a single body feather from the same specimen. In comparison with the single feather, the body plumage of the flattened bird looked rather filamentous. It was almost impossible to identify single structures, and in their place, various artefacts were produced. The investigation of plumage in a specimen of the Mesozoic bird Confuciusornis sanctus reveals similar structures. This indicates that flattening of specimens during fossilization amplifies the effect of overlapping among feathers and also causes a loss of morphological detail which can lead to misinterpretations. The results are discussed in connection with some dubious feather morphologies in recently described theropods and basal birds. Based on recent feather morphology, the structure of so-called proximal ribbon-like pennaceous feathers (PRPFs) found in many basal birds is reinterpreted. Furthermore, the morphology of a very similar-looking feather type found in the forelimb and tail of an early juvenile oviraptorosaur is discussed and diagnosed as the first feather generation growing out of the feather sheath. Thus, the whole plumage of this theropod might represent neoptile plumage.