Ichthyophonus-like infection in wild amphibians from Québec, Canada

Myositis associated with infection by Ichthyophonus-like organisms was diagnosed in 35 of 260 (13%) wild amphibians collected in Quebec, Canada, from 1959 to 1964 (n = 30), and 1992 to 1999 (n = 230). Infection was diagnosed in 17 green frogs Rana clamitans, 9 wood frogs R. sylvatica, 4 red-spotted newts Notophthalmus viridescens, 3 bullfrogs R. catesbeiana, 1 spring peeper Pseudacris crucifer, and 1 pickerel frog R. palustris. The spring peeper and one of the bullfrogs were collected in 1964 from the Mont Saint-Hilaire Biosphere Reserve, indicating long-term presence of the organism. Spores of the organisms invaded striated muscle fibers and were associated with variable degrees of granulomatous and eosinophilic inflammation. Infection was considered fatal in 2 green frogs, 1 wood frog, and 1 red-spotted newt. It was considered potentially significant in 3 additional green frogs in which up to 100% of the fibers of some muscles were replaced by spores associated with a severe granulomatous reaction. Ultrastructural features of Ichthyophonus-like spores included a thick trilaminated wall, a paramural cytoplasm, multiple nuclei, oval mitochondria with short tubulo-vesicular cristae and numerous ribosomes. This report represents 4 new host records and shows that ichthyophonosis is enzootic in amphibians from Quebec.     

Biogeography of copepods in lakes and ponds of subarctic Québec,Canada

We aimed to determine whether the copepod assemblages in lakes and ponds of northern Québec, Canada, were closer in composition to those found in southern Québec, or to those reported from the subarctic and arctic. Six calanoid and five cyclopoid species were identified from 37 ponds and lakes located in the region between 55° N and 59° N. Species diversity was generally low, ranging from 0 to 4 species per lake. Dominant species were Leptodiaptomus minutus and Acanthocyclops vernalis. The species assemblages showed high affinity with those found in forested regions of southern Québec. Exceptions were Leptodiaptomus tyrrelli, previously only recorded west of Hudson Bay, and Hesperodiaptomus arcticus, hitherto recorded north of 58° N. Relationships between the lakes, species, and environmental variables were explored using multivariate analysis. Lakes situated along the coast and on two offshore islands clustered together and were characterised by higher conductivity and pH than those lakes located further inland. Leptodiaptomus tyrrelli was common in these coastal lakes. Canonical correspondence analysis revealed statistically significant relationships between copepod distributions and conductivity, dissolved organic carbon and pH. These three variables accounted for 70% of the variation in the species' distribution.     

Genetic epidemiology of lipoprotein lipase deficiency in Saguenay-Lac-St-Jean (Québec, Canada).

Familial hyperchylomicronemia due to the lipoprotein lipase (LPL) activity deficiency (Type I hyperlipoproteinemia) is an autosomal recessive disorder with a prevalence estimated at one case per million. Thirty-four type I individuals are known in Saguenay-Lac-St-Jean (SLSJ), a geographically isolated region of Quebec. The prevalence of type I and LPL deficient heterozygote in this region was estimated at 1/6382 and 1/46 inhabitants respectively. The mean inbreeding coefficient was slightly elevated in the type I group compared with three control groups. The mean kinship coefficient was 15.1 times higher in the type I group than in the control groups. The high prevalence of type I in SLSJ appears to be the result of the emigration of carriers of LPL deficiency from Charlevoix, another isolated region of quebec to the SLSJ region. Endogamy also played a crucial role in increasing the prevalence of type I in SLSJ.     

Genotyping by sequencing suggests overwintering of Peronospora destructor in southwestern Québec,Canada

Several Peronospora species are carried by wind over short and long distances, from warmer climates where they survive on living plants to cooler climates. In eastern Canada, this annual flow of sporangia was thought to be the main source of Peronospora destructor responsible for onion downy mildew. However, the results of a recent study showed that the increasing frequency of onion downy mildew epidemics in eastern Canada is associated with warmer autumns, milder winters, and previous year disease severity, suggesting overwintering of the inoculum in an area where the pathogen is not known to be endogenous. In this study, genotyping by sequencing was used to investigate the population structure of P. destructor at the landscape scale. The study focused on a particular region of southwestern Québec—Les Jardins de Napierville—to determine if the populations were clonal and regionally differentiated. The data were characterized by a high level of linkage disequilibrium, characteristic of clonal organisms. Consequently, the null hypothesis of random mating was rejected when tested on predefined or nonpredefined populations, indicating that linkage disequilibrium was not a function of population structure and suggesting a mixed reproduction mode. Discriminant analysis of principal components performed with predefined population assignment allowed grouping P. destructor isolates by geographical regions, while analysis of molecular variance confirmed that this genetic differentiation was significant at the regional level. Without using a priori population assignment, isolates were clustered into four genetic clusters. These results represent a baseline estimate of the genetic diversity and population structure of P. destructor.     

Tree-ring analysis of white cedar (Thuja occidentalis L.) archaeological and historical wood in Québec City (Québec,Canada)

In Québec City, a segment of an old wooden palisade built for protection was found buried in situ. The palisade was excavated by the Laval University archaeology field school in 2004–2005, and 29 posts were recovered and sampled. The palisade enclosed the Intendant's Palace compound, which was the residence of the governor of New France at the end of the 17th century. Tree-ring analysis was performed on wood excavated from the Intendant's Palace archaeological site (PDI) and additional wood from two historical military buildings, the Artillery Park (ART) (early 18th century) and the Québec Citadel (CIT) (17th–19th centuries). Wood identification revealed that white cedar (Thuja occidentalis L.) was used for wood construction at the three sites. Many trees used for the construction of the PDI palisade were felled after the 1690 growing season, likely in September/October 1690. Posts probably came from trees growing close to the site on the banks of the Saint-Charles River. A white cedar ring-width chronology from the Rimouski area, approximately 300 km northeast of Québec City, along the St. Lawrence River, was used for cross-dating. Archaeological and historical wood samples from two of the three sites (PDI and ART) were first assembled in a 235-year tree-ring chronology, called the Québec chronology, extending from 1489 to 1723. The two master chronologies (Québec and Rimouski) were merged into a single 513-year tree-ring chronology (1489–2001), called the Saint-Laurent chronology.     

Vegetation patterns to characterize stream valleys in Hilly Southern Québec,Canada

Patterns in vegetation landscapes depend on a complex interplay between processes operating at various scales in time and space. Large-scale variations in environmental factors such as climate and landforms set a background in which smaller local-scale processes are involved. Disturbances superimpose variations on environmental factors and are also dependent on these. Stream valleys of hilly land in Southern Québec have been examined at different scales. Vegetation landscape units have been characterized at the level of landform (vegetation pattern), topographic gradient (geosigmassociation) and ecosite (synassociation). Extension of the methodology up to biogeographical units and practical applications are considered. xx]Nomenclature: plants: Scoggan, 1979; phytosociological units: Ansseau \s& Grandtner, 1986 \s& 1988; Theurillat \s& Moravec, 1990a, b. papers presented at the Vth INTECOL Congress at Yokohama 1990.     

Ruffed Grouse Winter Habitat Use in Mixed Softwood-Hardwood Forests,Québec,Canada

Abstract: Ruffed grouse (Bonasa umbellus) is a popular small game species in northeastern North America. We assessed female ruffed grouse habitat characteristics during winter of 2001-2002 and 2002-2003 in a region dominated by mixed softwood-hardwood forests by comparing used and random locations. We followed 23 radiotagged adult females in 2 forest sites of the Réserve faunique de Portneuf, Québec, Canada, from late November to mid-April. We described grouse habitat using ground surveys and identified selected habitat characteristics using analysis of variance and logistic regression. Females preferred mixed softwood-hardwood stands > 17 m tall and 61-120 years old. Compared with random locations, grouse locations had more well-developed total canopy cover (>4m;75%), canopy (>4m;35%), midstory (1-4 m tall; 35%), and lower-story (<1 m tall; 23%) coniferous cover, and higher coniferous stem density and tree basal area (dbh > 9 cm; 343 stems/ha and 9.0 m²/ha, respectively). Forest management should maintain mature mixed softwood-hardwood stands (50% coniferous), which are adequate winter habitat for ruffed grouse.     

Downstream variations of phytoplankton in the St.Lawrence River (Québec, Canada)

Longitudinal variations of phytoplankton biomass and composition were assessed in a 250 km-long section of the St.Lawrence River, which alternately runs through narrow (< 2 km) river cross sections and wide (up to 10 km) fluvial lakes. In the main river stem, concentrations of suspended matter and total phosphorus increased with distance downstream, whereas light penetration decreased. Seasonal changes in plankton composition and biomass were more important than those resulting from differences in water mass (tributary) of origin. Sampling at three cross river sections and in two fluvial lakes showed a progressive downstream decrease in phytoplankton biomass and changes in size structure and taxonomic composition. River plankton was primarily composed of small (< 10 µm equivalent spherical diameter), truly planktonic cells belonging to Cryptophyceae and diatoms, with Chlorophyceae in summer. Plankton sampled in summer among rooted macrophytes in fluvial lakes exhibited a higher biomass of resuspended periphytic algae than in the main river stem, which contributed slightly to downstream phytoplankton biomass.Successive river cross sections always shared about 50% of their taxa, indicating a rapid downstream transport of algae within the main water mass. However, the proportion of species common to all cross sections was highest during the spring freshet, and lowest during summer low discharge, likely resulting from the development of a distinct flora in fluvial lakes during summer. Conversely, about 30% of the identified taxa were exclusive to a cross section and were replaced by others occurring downstream. Overall, phytoplankton composition along the St.Lawrence River is primarily controlled by advective forces, which result in a homogeneous flora in the main river stem, with a local contribution of resuspended periphyton from fluvial lakes.     

Factors influencing aboveground production of Scirpus marshes in the St. Lawrence estuary,Québec,Canada

Aboveground production of macrophytes in tidal marshes was studied for 3 years at Montmagny and Cap St. Ignace on the south shore of the St. Lawrence River in Québec, Canada. Year-to-year variation of production of the dominant species, Scirpus americanus Pers., was observed and related to variation in weather during the growing season. With the exception of Zizania aquatica L., relative production of the macrophytes for different parts of the marshes remained constant in successive years. A multiple regression procedure was used to establish the relationship between production and a series of independent variables including biotic (goose use and plant competition) and abiotic factors (submersion, substrate hardness, soil texture and sedimentation). A lower percentage of organic matter in the soil and a firm substrate were associated with a greater production of S. americanus. Accretion of sediments was positively correlated with the production of S. americanus and Sagittaria spp., whereas the percentage of time of submersion was negatively related with production of Sagittaria spp., Eleocharis spp. and Scirpus torreyi Olney. Competitive interference was apparent between S. americanus and S. torreyi and between Eleocharis spp. and Zizania spp. No measured abiotic characteristic of the marsh explained the variation of Zizania production.     

Phytoextraction of soil trace elements by willow during a phytoremediation trial in Southern Québec,Canada

The phytoextraction of the trace elements (TEs) As, Cd, Cu, Ni, Pb, and Zn by willow cultivars (Fish Creek, SV1 and SX67) was measured during a 3-year field trial in a mildly contaminated soil. Biomass ranged from 2.8 to 4.4 Mg/ha/year at 30,000 plants/ha. Shoots (62%) were the main component followed by leaves (23%) and roots (15%). Biomass was positively linked to soluble soil dissolved organic carbon, K, and Mg, while TEs, not Cd and Zn, had a negative effect. The TE concentration ranking was: Zn > Cu > Cd > Ni, Pb > As, and distribution patterns were: (i) minima in shoots (As, Ni), (ii) maxima in leaves (Cd, Zn), or (iii) maxima in roots (Cu, Pb). Correlations between soil and plant TE were significant for the six TEs in roots. The amounts extracted were at a maximum for Zn, whereas Fish Creek and SV1 extracted more TE than SX67. More than 60% (91–94% for Cd and Zn) of the total TE was in the aboveground parts. Uptake increased with time because of higher biomass. Fertilization, the selection of cultivars, and the use of complementary plants are required to improve productivity and Cd and Zn uptake.     

High concentrations of viruses in the sediments of Lac Gilbert, Québec

Viruses were found to be very abundant in the top layer of the sediments of Lac Gilbert, Québec. Viruses were extracted from the sediments using pyrophosphate buffer, and viruses from the diluted extracts were pelleted onto grids and enumerated using transmission electron microscopy. Viral abundance in the sediments ranged from 6.5 × 10⁸ to 1.83 × 10¹⁰ ml^–1, which is 10- to 1,000-fold greater than the number observed in the water column. This increase corresponds well with the 100- to 1,000-fold increase in bacterial abundance in the sediments. Viral abundance differed significantly among the surface sediment samples taken at different bottom depths and among samples taken at different depths of the water column. Viral abundance also varied significantly between the oxic and anoxic zones of the water column and the sediments. The virus-to-bacteria ratio varied greatly among the different sediment sites but not among depths in the water column. Viral abundance in the water column was related to bacterial abundance and chlorophyll concentration, whereas viruses in the sediments were most abundant in sediments with high organic matter content. Elevated viral abundance and their erratic distribution in the sediments suggest that viruses might play an important role in sediment microbial dynamics. Correspondence to: Roxane Maranger     

Hydrocarbons,Pb-Concentrations,and Pb-Isotope Ratios in Contaminated Alluvial Soils (Southern Québec,Canada)

Hydrocarbon-contaminated layers found over 100 kilometers of riverbanks (southern Québec) were investigated. Analytical results for hydrocarbons, trace metals, Pb concentrations, and Pb isotopic signatures (²⁰⁶Pb/²⁰⁷Pb, ²⁰⁸Pb/²⁰⁶Pb, ²⁰⁴Pb/²⁰⁶Pb) of contaminated soil are presented. Soil samples show hydrocarbon concentrations (C₁₀-C₅₀) ranging from <60 to 660 mg kg^?1. Higher concentrations were found in the Richmond site (southern Québec). The values for Pb-concentrations ranged between 7 and 149 mg kg^?1 with median value of 23 mg kg^?1. For the Pb isotope ratios, the values obtained in the hydrocarbon layer range from 1.124 to 1.175 ± 0.011 (²⁰⁶Pb/²⁰⁷Pb), 2.085 to 2.126 ± 0.011 (²⁰⁸Pb/²⁰⁶Pb), and 0.054 to 0.057 ± 0.000 (²⁰⁴Pb/²⁰⁶Pb). The combination of various techniques used allows us to distinguish the various sources of contaminants. The study also reveals that Pb and other trace metal elements continue to be found in the fluvial environment, even after many years, and this soil pollution could affect the quality of streams and living organisms.     

Isolation and diversity of culturable rhizobacteria associated with economically important crops and uncultivated plants in Québec,Canada

Plants are chronically associated with microorganisms, residing all tissues. Holonomic analysis of diversity of established rhizobacteria in uncultivated plants is scarce. Thus, the present study was conducted to access the root-associated bacterial diversity of 6 crops (maize, canola, soybean, reed canarygrass, alfafa, and miscanthus) and 20 uncultivated plant species in the region of Sainte-Anne-de-Bellevue, Québec, Canada, using pure-culture methods. Based on 16S rRNA gene sequence analysis, 446 bacterial isolates were distributed onto four phyla (Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes), 32 families and 90 genera. Proteobacteria constituted the largest group of isolates (240), 40% of ectophytic and 61% of endophytic bacteria. Representatives of the genera Bacillus and Pseudomonas dominated in rhizosphere soil; Microbacterium and Pseudomonas were the predominant endophytes. Some genera were associated with specific plant species, such as Stenotrophomonas, Yersinia, Labrys and Luteibacter. Several endophytes were occasionally observed in the rhizosphere, and vice versa. This is the first survey of culturable endophytic bacteria associated with uncultivated plants in Québec. The culturable bacterial community studied herein are assumed to represent a portion of the entire phytomicrobiome of the evaluated plants. Results confirmed that the crops and uncultivated plants of Québec represent an extremely rich reservoir of diverse rhizobacteria.     

Chitinozoan zonation of the Late Ordovician and the Early Silurian of the island of Anticosti, Québec, Canada

A reappraisal of chitinozoan distribution across the Ordovician-Silurian boundary on the Island of Anticosti has led to the recognition of a new zone, the Ancyrochitina ellisbayensis biozone, in the uppermost part of the Ellis Bay Formation. This biozone lies between the well defined Upper Ordovician Spinachitina taugourdeaui biozone and the lowest Silurian (Rhuddanian) Plectochitina nodifera biozone of the Becscie Formation. The occurrence of such diagnostic species as P. nodifera, Belonechitina postrobusta, Conochitina electa and Ancyrochitina ramosaspina in the Lower Silurian of Anticosti points to a close similarity to faunas in Estonia and north Latvia and indicates an age ranging from the Parakidograptus acuminatus to the Coronograptus cyphus in terms of graptolite zones. The chitinozoan biozonation harmonizes with that based on conodonts and, to a lesser extent, with the known graptolite faunal succession. Five new species: Ancyrochitina ellisbayensis sp. nov., Clathrochitina postconcinna sp. nov., Conochitina gunriveris sp. nov., Clathrochitina perexilis sp. nov., Bursachitina basiconcava sp. nov. and three species in open nomenclature are described.     

Distribution, abundance, and seasonal ecology of Listronotus maculicollis (Coleoptera: Curculionidae) on golf courses in Québec, Canada

The weevil Listronotus maculicollis Dietz (Coleoptera: Curculionidae) is a major pest of annual bluegrass, Poa annua L., on golf courses in northeastern North America. To determine the distribution, abundance, and seasonal ecology of L. maculicollis on golf courses in Québec, Canada, we sampled 19 golf courses (GC1-GC19) from different geographic and climatic conditions during 2001, 2002, and 2003. L. maculicollis was found on all golf courses except GC19, which was located in northeastern Québec. In most sites, L. maculicollis completed two generations per year. A linear regression model comparing L. maculicollis larval densities as a function of spatial coordinates revealed that L. maculicollis were more abundant in western Québec than in eastern Québec. Pearson correlations on the probability of both L. maculicollis larval and pupal presence with soil parameters indicated significant positive correlations for fine sand (larvae) and soil pH (pupae) and negative correlations for gravel.     

Exploratory multiscale analysis of the fish assemblages and habitats of the lower St. Lawrence River,Québec,Canada

This work presents a multiscale analysis of the fish diversity of the lower St. Lawrence River which flows from the Laurentian Great Lakes of North America. A database of about 14,000 fish sampling stations from the lower St. Lawrence is linked to five different habitat maps of the study area: hydrographical units, water masses, depth, sediment type and wetland type. We hypothesize that species turnover (beta diversity) will be significant among these habitat maps. For each map, we calculate a UPGMA dendrogram based on the Jaccard coefficient of similarity in species occurrences as a first assemblage–habitat model. A randomization test is then used to identify the significant dendrograms from which we infer fish assemblages. We then show that many species are actually selecting or avoiding habitats. Finally, species selecting particular habitats are described by some selected ecological traits that are expected to occur frequently in those habitats. We found assemblages for the hydrographical units but not for the water masses. The fluvial section is selected by many stenohaline and some euryhaline species, while the freshwater estuary and the brackish estuary are only selected by euryhaline species. In the fluvial section at the hydrographical unit scale, many species associated with lentic habitats are limnophilic and more vegetation-dependent while many species selecting lotic habitats are rheophilic insectivorous species. Significant assemblages are defined for depth, sediment type and wetland type. Taken together, we found strong empirical evidence of a diverse actively selecting littoral assemblage of small, low mobility fishes opposing a channel assemblage of larger, more mobile fishes.     

A molecular view of microbial diversity in a dynamic landfill in Québec

An Aroclor 1260 (polychlorinated biphenyl, PCB)-laden soil and one heavily contaminated with polycyclic aromatic hydrocarbons (PAHs) from a secure, engineered landfill site in Québec were analyzed for microbial diversity using a clone library of the 16S rDNA sequences. Phylogenetic analysis revealed that three phyla and their major subdivisions of the domain Bacteria were highly represented in these samples despite the high pollution, particularly by PAHs. None of the 16S rDNA sequences obtained matched known sequences from cultivated bacterial species or from 16S rDNA sequences amplified directly from other environmental samples.     

Physiological, Endocrine, and Genetic Bases of Anadromy in the Brook Charr, Salvelinus Fontinalis, of the Laval River (Québec, Canada)

Brook charr, Salvelinus fontinalis, often display alternate life history styles in coastal areas. In the Laval River, some brook charr remain freshwater residents, while others undergo seasonal migrations between freshwater and saltwater environments. In the present paper, we examined physiological (electrolyte concentrations, gill Na⁺, K⁺-ATPase activity, and thyroid hormone levels) as well as genetic differences (neutral genetic markers) between anadromous and river-resident fish from the Laval River. We also examined how artificial rearing conditions affected seasonal variations in the osmoregulatory physiology of a domestic strain derived from wild anadromous fish. Sympatric anadromous and resident forms of brook charr of the Laval River exhibited differences in gill Na⁺, K⁺-ATPase activity, plasma thyroxine (T₄), and triidothyronine (T₃) concentrations. In domestic anadromous charr, rearing conditions during development had no negative impact on osmoregulatory ability or on gill Na⁺, K⁺-ATPase activity. These results argued for an important hereditary component of gill Na⁺, K⁺-ATPase activity. However, the spring increase in T₄ was present only in wild fish. Significant differences observed at microsatellite loci further suggested that at least some level of reproductive isolation may have occurred between anadromous and resident charr in the Laval River.     

Evaluation of a Questionnaire-Based Method for the Estimation of Methylmercury Exposure of Recreational Anglers in the James Bay Territory (Québec,Canada)

The impoundment of reservoirs temporarily increases the methylation of mercury bound to flooded soils and vegetation and the transfer of methylmercury (MeHg) to fish. MeHg levels in various fish species of hydroelectric reservoirs located in the James Bay territory increased by factors of 3 to 7, then gradually declined toward initial concentrations 10 to 20 years after flooding, depending on reservoir characteristics. The potential risk of increased MeHg exposure for recreational anglers who consume fish from these reservoirs had not been assessed previously. A less invasive method than systematic measurement of Hg levels in hair was developed to determine MeHg exposure of recreational anglers. A fish consumption questionnaire-based approach was combined with a toxicokinetic model to estimate the corresponding hair MeHg concentrations. The results were compared with actual analytical determinations of hair Hg levels for the 94 recreational anglers recruited for the study. The values predicted by the model based on self-reporting consumption overestimated actual hair Hg levels by an average factor greater than 6. The mean hair level predicted for the most recent period (September-October) was 23.3?µg.g^?1 compared to 3.6 µg.g^?1 for the measured value. Although the questionnaire protocol may certainly be improved to increase the precision of estimations, direct hair Hg measurement remains the more effective means to assess Hg exposure.