粗毛栓菌cDNA文库的构建和漆酶基因的表达分析

粗毛栓菌（Trametes gallica）能够分泌多种胞外氧化酶并且快速降解木质纤维素.为了快速高效分离鉴定粗毛栓菌木质纤维素降解酶相关基因,用Trizol试剂提取不同培养条件下粗毛栓菌总RNA,用Creator^TM SMART^TM cDNA Library Construction Kit和Advantage^®2 PCR Kit成功构建了该菌全长cDNA文库.原始文库滴度为1.5×10⁵cfu,重组率达99%,插入片段在0.7～2.0 kb之间,平均大小约1 kb. 随机取16个重组子进行测序,全长cDNA序列完整性率为85.7%;并筛选到1个漆酶基因,编码区长1 551 bp,预测的蛋白质由517个氨基酸残基组成,分子量为55.41 kD,等电点为4.76.用半定量RT-PCR法分析了该漆酶基因在不同培养条件下的表达水平. 结果显示,高浓度的碳源,氮源,Cu^2＋均能诱导此基因的表达,该结果为漆酶基因的表达调控机制的深入研究奠定了基础.     

白腐菌液体和固体培养产生木质纤维素降解酶的比较研究

侧耳sp2(Pleurotus sp．2)和粗毛栓菌(Trametes gallica)是产木质纤维素降解酶能力强,且产酶较快的菌株。对其在液体培养基、固体培养基中产生木质纤维素降解酶能力和行为进行了比较分析和研究。结果表明,Pleurotus sp．2在低氮高碳高无机盐培养基中的锰过氧化物酶(Manganese peroxidases, MnPs)、木质素过氧化物酶(Lignin peroxidases．LiPs)、漆酶(laccases,Lacs)和半纤维素酶(Hemicellulases, Hcels)的活性最高。当该菌株培养在含有低氮无碳高无机盐液体培养基的麦草粉中时,MnPs和Lacs的活性峰值均出现在10d,而Hcels的活性在40d时达到峰值。Trametes gallica在高氮低碳高无机盐培养基中的Lacs和LiPs的活性最高,在低氮高碳高无机盐培养基中的MnPs和Hcels的活性最高。当该菌株培养在含有高氮无碳高无机盐和低氮无碳高无机盐液体培养基的麦草粉中时,MnPs存10d、Lacs和Hcels在40d、LiPs存50d,分别达到峰值。Pleurotus sp．2和Trametes gallica在液体培养基中具有很强的木质纤维素降解酶产生能力且产酶速度较快,在固体培养基中具有很强的降解麦秸生物质能力,但这两株菌在液体和固体培养基中,产木质纤维素降解酶的能力和行为都有较大的差异,相关性小。     

筛选选择性降解玉米秸皮的菌株

目的:筛选能选择性降解玉米秸皮的菌株,用于玉米秸皮生物机械法制浆的研究。方法:采用Bavendamm-PDA平板对玉米种植地土壤内的真菌进行初筛选,之后采用玉米秸皮降解实验对产生棕色变色圈的菌株和实验室现有白腐菌进行复筛选。结果:筛选到4株能在Bavendamm-PDA平板上产生棕色变色圈的菌株;降解实验显示杂色云芝引起了最大31.76%的重量损失,重量损失最小的菌株为粗毛栓菌lg-9;除杂色云芝和白耙齿菌降低了玉米秸皮苯醇抽出物外,其他处理样均增加;碳水化合物测定结果表明白耙齿菌处理样综纤维素的损失最大,且各种菌株所引起的综纤维素损失中,纤维素和聚戊糖损失所占的比例有很大差别。结论:粗毛栓菌lg-9对玉米秸皮木素降解的选择性最强,之后为Sd、黄袍原毛平革菌-14和黄袍原毛平革菌-25。     

用cDNA微阵列技术快速筛选粗毛栓菌的表达基因

利用cDNA微阵列技术快速筛选具有较强降解木质纤维素能力的白腐真菌粗毛栓菌(Trametes gallica)的表达基因.利用木质素生物降解模式菌株黄孢原毛平革菌(Phanerochaete chrysosporium)的cDNA制备研究所用微阵列.在含有2 596个cDNA片段的芯片上共检测到172个阳性克隆,其中有165个克隆的荧光信号比值(Cy-5/Cy-3)在0.5和2.0之间,占所检测阳性克隆数的95.9%.对应于在限氮条件下生长5天和12天的粗毛栓菌培养物,分别有3个和4个时序特异性差异表达基因.随机挑取122个克隆进行测序和序列比对,发现所测序列中有118个能够很好地定位于黄孢原毛平革菌的基因组上.结果显示,粗毛栓菌与黄孢原毛平革菌在表达序列上存在较大差异,表明这两种真菌之间存在着较远的亲缘关系.通过同源性比对分析,发现2个令人感兴趣的克隆,一个对应于黄孢原毛平革菌过氧化物酶基因lpoB的部分片段,另一个为编码一种热激蛋白的基因.     

粗毛栓菌胞外锰过氧化物酶的纯化及性质

培养于麦草粉上的白腐担子菌粗毛栓菌分泌胞外木质纤维素降解酶(纤维素酶、木聚糖酶、漆酶、锰过氧化物酶和木质素过氧化物酶)。经过超滤、盐析、离子交换层析、凝胶过滤和活性聚丙烯酰胺凝胶电泳等步骤,获得了初步纯化的锰过氧化物酶组分。利用变性聚丙烯酰胺凝胶电泳和等电点聚焦技术所测定的锰过氧化物酶的相对分子质量和等电点分别为35.7 ku和pI 2.8。研究结果表明,所纯化的锰过氧化物酶在407nm处具有最大光吸收峰,该酶最适作用pH值和温度分别为pH 5.3和35℃。     

巴西蘑菇对木质纤维素的降解与转化*

巴西蘑菇能够降解棉籽壳和麦草两种培养基中木质纤维素复合体中的全部组分,属于白腐真菌;巴西蘑菇降解的有机物质的绝大部分被菌体的呼吸过程消耗掉,其绝对生物学效率较低,仅为4.41%~5.25%;在栽培前期木质素的降解速率大于纤维素和半纤维素,这对纤维素和半纤维素的降解十分有利;非木质纤维素组分主要在菌丝生长阶段被利用,而木质纤维素是子实体生长发育阶段的主要碳源;就整个栽培过程而言,巴西蘑菇生长发育所需要的82.39%~84.50%的碳源来自木质纤维素。     

应用混料实验设计制备秸秆复合降解菌剂

农业秸秆类废弃物含有大量木质纤维素,该类物质结构稳定,不易降解,为秸秆的合理利用带来诸多困难。本实验尝试利用混料实验设计对筛选出可以共同培养的五种木质纤维素降解菌的配比进行研究,寻求复合发酵降解剂各组分的最佳配比,并分析发酵产品得到适用于不同发酵目的的菌剂。通过对发酵产品中木质素和纤维素降解率及还原糖的含量的分析建立模型,分析预测纤维素降解率最高为35.75%,木质素降解率最高为27%,还原糖含量最高为3.39mg/g。通过优化得出发酵菌剂最优配比为枯草芽胞杆菌12.1%,克鲁斯假丝酵母10%,地衣芽胞杆菌27.2%,变色栓菌10.6%,黄孢原毛平革菌40%。对应三指标的实测值为：35.47%,26.41%和2.37mg/g。     

厌氧真菌和甲烷菌共培养的研究进展

厌氧真菌是自然界中降解植物纤维素类物质最高效的微生物之一.近年来,大量厌氧真菌和甲烷菌共培养菌株被分离.共培养中,甲烷菌通过对厌氧真菌代谢产物的利用显著提高厌氧真菌对木质纤维素的降解;厌氧真菌通过为甲烷菌提供能量和营养物质使甲烷菌快速生成大量甲烷.全面深入地了解共培养中两者的互作关系以及共培养降解木质纤维素产甲烷的特性...     

用cDNA微阵列技术快速筛选粗毛栓菌的表达基因(英)

利用cDNA微阵列技术快速筛选具有较强降解木质纤维素能力的白腐真菌粗毛栓菌(Trametes gallica)的表达基因.利用木质素生物降解模式菌株黄孢原毛平革菌（Phanerochaete chrysosporium）的cDNA制备研究所用微阵列.在含有2 596个cDNA片段的芯片上共检测到172个阳性克隆,其中有165个克隆的荧光信号比值（Cy-5/Cy-3）在0.5和2.0之间,占所检测阳性克隆数的95.9％.对应于在限氮条件下生长５天和12天的粗毛栓菌培养物,分别有３个和４个时序特异性差异表达基因.随机挑取122个克隆进行测序和序列比对,发现所测序列中有118个能够很好地定位于黄孢原毛平革菌的基因组上.结果显示,粗毛栓菌与黄孢原毛平革菌在表达序列上存在较大差异,表明这两种真菌之间存在着较远的亲缘关系.通过同源性比对分析,发现２个令人感兴趣的克隆,一个对应于黄孢原毛平革菌过氧化物酶基因lpoB的部分片段,另一个为编码一种热激蛋白的基因.     

粗糙脉孢菌木质纤维素降解利用研究进展简

粗糙脉孢菌作为木质纤维素降解真菌,不仅具有完整的木质纤维素降解酶系,而且还拥有全基因组基因敲除突变体库,是研究丝状真菌纤维素酶表达分泌和木质纤维素降解机制的优秀体系。近年来,国内外利用粗糙脉孢菌系统,在木质纤维素降解机制方面取得了显著进展,包括纤维素酶信号传导、调控以及生物质降解后糖的转运利用等。笔者就相关方面的进展进行综述,并对利用粗糙脉孢菌研究木质纤维素降解利用进行展望,总结和分析木质纤维素降解机制研究的国际前沿动态,有助于加深本领域研究人员对真菌体系纤维素降解机制的理解。     

Enhancement of dry anaerobic batch digestion of the organic fraction of municipal solid waste by an aerobic pretreatment step

The start-up of the dry anaerobic batch digestion by the BIOCEL-concept of the organic fraction of municipal solid waste (MSW) is unbalanced when a methanogenic inoculum (digested sewage sludge) is added to a total solids concentration of 35%. The unbalanced conditions are the result of the rapid degradation of easily-degradable compounds which are present in the organic fraction. Enhancement of the first start-up of the dry batch digestion was tried by applying an aerobic partial-composting step. By this aerobic treatment the easily degradable compounds are removed. After the composting step the anaerobic digestion will be limited by the conversion of the ligno-cellulose part of the organic fraction. It appeared that at least 19·5% of the volatile solids (VS) should be converted during the aerobic composting period before acid formation in the digestion was in balance with the methane formation. This amount of aerobically degraded VS means a 40% loss of potential biogas. The loss of a part of the biogas is a major drawback to the partial composting as a method for enhancing the start-up of the dry anaerobic digestion. A shorter composting period which is combined with another start-up method might be a feasible method to decrease the energy input of the dry digestion process.     

Chemical preservation of plants and insects in natural resins

The morphological preservation of fossils in amber is remarkable, but their chemical composition is largely unknown. The likelihood of DNA preservation in amber has been questioned but, surprisingly, the fate of more decay-resistant macromolecules such as ligno-cellulose in plants or the chitin–protein complex in insect cuticle has not been investigated. Here we report the results of investigations using pyrolysis-gas chromatography/mass spectrometry (py-GC/MS) of the tissues of insects and the plant Hymenaea from ancient and sub-fossil resins (2–20 ka) from Kenya, and from Dominican amber (25–30 Ma). The volatile components of the resin have penetrated even the internal tissues, resulting in the exceptional three-dimensional preservation of amber inclusions. Chitin is preserved in the bee and ligno-cellulose in the Hymenaea leaf from the Kenyan resins. There was no trace, however, of these macromolecules in tissues in Dominican amber. The presence of aliphatic polymer and sulphur-containing moieties in these tissues indicates that they have undergone diagenetic alteration; in view of this, the preservation in Dominican amber of a macromolecule as labile as DNA would be extraordinary.     

Study on some alkoxysilanes used for hydrophobation and protection of wood against decay

Two types of silanes, namely aklylalkoxysilanes and arylalkoxysilanes, were used for wood impregnation aiming at hydrophobisation of the ligno-cellulose material. The suggested mixture of alkyltriethoxysilanes and dialkyldiethoxysilanes improved water repellence when compared to conventionally used silanes. An attempt to immobilise boric acid with the siloxane matrix was also done. Decay resistance of the treated samples was tested by soil-jar test using the brown rot fungus Postia placenta.Features of the impregnated wood such as moisture content, swelling, anti-swelling efficacy and weight percentage gain were not significantly related to the mass loss of samples caused by the fungus. Samples impregnated with EtPhSi(OEt)₂ silanes showed improved durability (3.5–11.5% mass loss). Addition of boric acid to two of the silanols showed the best result for durability of wood, i.e. the lowest mass loss of 2.3 and 1.1%. These treatments upgraded the wood to “very durable”, a significant improvement from its natural status, i.e. slightly durable. The studied alkoxysilanes have moderate ability to penetrate the wood cell wall and hence to improve its hydrophobicity. These silanes are promising although more research should be carried out on the degree of oligomer polymerisation in the wood cell wall.     

Significance and limitations of first generation biofuels

Formerly on the margins of the European agricultural landscape, liquid biofuels for transport have recently come into sharp focus with the help of three drivers: the depletion of oil resources and the political motto of energy independence, international negotiations on climate, and finally - in Europe at least - the overhaul of the common agricultural policy underpinning the need to diversify this sector. This political purpose has led to aggressive development targets in both Europe and the United States, implying a nearly ten-fold increase of biofuel production within ten years. This article introduces the current biofuel production technologies (so-called ;first generation'), whose common marker is the reliance on the storage organs of agricultural plants. This implies a relatively strong demand in arable areas, along with only moderately positive energy and environmental advantages compared to fossil fuels. 'Second generation' biofuels, which are based on generic biomass (ligno-cellulose) are expected to overcome these limitations, but will not be deployed on the market for another ten years.     

Adaptive traits of bark and ambrosia beetle-associated fungi

A phenotype is the expression of interactions between species genotype and environment. We quantified the contributions of ecological and phylogenetic associations to phenotypic variation in Geosmithia fungi. Geosmithia are symbiotic beetle-associated saprotrophs with a range of life histories and host specificities, including obligate nutritional beetle mutualists (ambrosia fungi) and phytopathogens. We hypothesized that: (1) species phenotypes are better explained by their ecology than by their phylogenetic relationships; (2) niche specialization was accompanied by enzymatic capability losses; and (3) ambrosia Geosmithia species have higher nutritional quality and antibiotic capabilities than species with facultative symbioses. Our results confirmed that long-term co-evolved specialists have reduced metabolic breadth in comparison to generalists. Phytopathogenic G. morbida produces unique enzyme suites with affinity to ligno-cellulose. Mycelia of ambrosia fungi contain large amounts of oleic fatty acid with nutritive and possibly allelopathic function. Overall, our results indicate that Geosmithia ecology have greater effect on species phenotype than their phylogenetic relationships.     

木质素降解菌BYL-7的筛选及降解条件优化

【背景】微生物降解木质素因其具有降解效率高和环保等特点而备受关注。【目的】筛选高效木质素降解真菌,并对其降解条件进行优化。【方法】通过愈创木酚-马铃薯葡萄糖琼脂(potato dextrose agar,PDA)和苯胺蓝平板法筛选高效木质素降解菌株,利用单因素筛选及响应面试验对培养条件进行优化。【结果】筛选到一株高效木质素降解菌BYL-7,经形态和多序列分析初步确定为Trametes versicolor。单因素试验证明初始pH、温度和接种量为降解木质素显著影响因子,响应面试验确定降解木质素最优条件为：初始pH 6.7,温度25 °C,接种量8%。在此条件下,碱性木质素降解率为36.5%,比未优化前提高54.0%;水稻秸秆木质素、半纤维素和纤维素降解率分别为32.8%、21.5%、13.2%,其中木质素降解率比未优化前提高36.1%;漆酶活性在第6天达到峰值120.0 U/L,比未优化前提高25.0%;木质素过氧化物酶活性在第6天达到峰值1 343.8 U/L,比未优化前提高36.0%;锰过氧化物酶活性在第5天达到峰值463.8 U/L,比未优化前提高31.7%。【结论】研究结果为木质素的降解提供了良好的菌种资源,同时也为后续木质素的研究积累了相关数据。     

Temperature sensitivity of greenhouse gas production in wetland soils of different vegetation

Organic matter decomposition regulates rates of carbon loss (CO₂ and CH₄) in wetlands and has implications for carbon sequestration in the context of changing global temperature. Here we determined the influence of temperature and vegetation type on both aerobic and anaerobic decomposition of organic matter in subtropical wetland soils. As in many other studies, increased temperature resulted in higher rates of respiration and methanogenesis under both aerobic and anaerobic conditions, and the positive effect of temperature depended on vegetation (source of carbon substrate to soil). Under anaerobic incubations, the proportion of gaseous C (CO₂ and CH₄) lost as CH₄ increased with temperature indicating a greater sensitivity of methanogenesis to temperature. This was further supported by a wider range of Q₁₀ values (1.4–3.6) for methane production as compared with anaerobic CO₂ (1.3–2.5) or aerobic CO₂ (1.4–2.1) production. The increasing strength of positive linear correlation between CO₂:CH₄ ratio and the soil organic matter ligno-cellulose index at higher temperature indicated that the temperature sensitivity of methanogenesis was likely the result of increased C availability at higher temperature. This information adds to our basic understanding of decomposition in warmer subtropical and tropical wetland systems and has implications for C models in wetlands with different vegetation types.     

Optimization of pyrene degradation by white-rot fungus Pleurotus pulmonarius F043 and characterization of its metabolites

Pleurotus pulmonarius F043, a fungus collected from tropical rain forest, was used to degrade pyrene, a four-rings polycyclic aromatic hydrocarbons (PAHs), in a mineral medium broth. A maximum degradation rate of pyrene (90 %) was occurred at pH 3 and the lowest degradation rate was found in the culture at pH 10 (2 %). More than 90 % pyrene degradation was achieved at pH ranged from 3 to 5, whereas the degradation rate significantly declined when the pH was >5. The degradation of pyrene increased from 2 to 96 % when the temperature rose from 4 to 25 °C. When the temperature was increased to 60 °C resulting the lowest degradation rate into 7 %. Among the agitation rates tested, 120 rpm was the best with 95 % degradation, followed by 100 rpm (90 %). The optimum agitation range for pyrene degradation by P. pulmonarius F043 was 100–120 rpm. Among all the concentrations tested, 0.5 % Tween 80 was the best with 98 % degradation, followed by 1 % Tween 80 (90 %). The optimum concentration of Tween 80 for pyrene degradation by P. pulmonarius F043 was 0.5–1 %. The degradation rate decreased, while the concentration of Tween 80 was increased. The metabolic product was found during degradation process through the identification of gentisic acid by TLC, UV-Spectrophotometer, and GC–MS.     

Effect of dietary proteins on the turnover of rat liver argininosuccinate synthetase.

The rates of synthesis and degradation of arginosuccinate synthetase in rat liver under various dietary conditions were determined. The relative rate of the enzyme synthesis in the livers of rats fed on 70% casein diet was 4.0 times greater than that for rats fed on 5% casein diet. The rate constants of degradation (Kd of argininosuccinate synthetase were estimated to be 0.15 and 0.16 day-1 under 70% and 5% casein feeding, respectively. When the dietary conditions were changed acutely from 70% to 5% casein diet or vice versa, the rates of the enzyme synthesis decreased or increased, respectively, and the rates of enzyme degradation were also affected. The change from 5% to 70% casein diet caused a transient decrease in the rate of degradation. After the enzyme activity had achieved a new steady-state level, the enzyme degradation proceeded at the normal steady rate. On the other hand, the change from 70% to 5% casein diet caused a transient increase in the rate of degradation. Thus, the only factor regulating the amount of enzyme in rat liver is the rate of enzyme synthesis under the steady-state conditions. However, the rates of both enzyme synthesis and degradation are involved in the regulation of the amount of enzyme during dietary transition.     

Differential effects of proteinase inhibitors and amines on the lysosomal and non-lysosomal pathways of protein degradation in isolated rat hepatocytes

Ammonia, which like other lysosomotropic amines inhibits protein degradation in isolated rat hepatocytes by 70–80%, was utilized as a diagnostic tool to distinguish between the relative effects of various proteinase inhibitors on the lysosomal and non-lysosomal pathways of intracellular protein degradation.Leupeptin was found to inhibit lysosomal protein degradation by 80–85%, and non-lysosomal degradation by about 15%. Antipain had a similar, but somewhat weaker effect. Pepstain, bestatin and aprotinin (Traysylol) produced minor inhibitory effects (possibly on both degradation, pathways), whereas bacitracin and soybean trypsin inhibitor wre ineffective.Chymostatin inhibited lysosomal protein degradation by about 45%, whereas the non-lysosomal pathway was inhibited by more than 50%. Chymostatin was unique among the inhibitors tested in causing such a pronounced effect on non-lysosomal protein degradation, and appeared to selectively inhibit the energy-dependent portion of this pathway.The effects of the various inhibitors were additive to the extent expected on the basis of their kwown actions on lysosomal and non-lysosomal protein degradation. Thus, a combination of methylamine, leupeptine and chymostatin inhibited overall protein degradation by about 90%, resulting in a substantial improvement of the cellular nitrogen balance.The degradation inhibitors caused a partial inhibition of protein synthesis, apparently mainly by shutting down the supply of amino acids from the lysosome. The inhibitory effects of leupeptin and antipain were completely reversed by amino acid addition, whereas some inhibition remained in the case of chymostatin and the lysosomotropic amines, possibly reflecting a certain nonspecific toxicity.