Population Structure of Peronospora effusa in the Southwestern United States

Peronospora effusa is an obligate pathogen that causes downy mildew on spinach and is considered the most economically important disease of spinach. The objective of the current research was to assess genetic diversity of known historical races and isolates collected in 2014 from production fields in Yuma, Arizona and Salinas Valley, California. Candidate neutral single nucleotide polymorphisms (SNPs) were identified by comparing sequence data from reference isolates of known races of the pathogen collected in 2009 and 2010. Genotypes were assessed using targeted sequencing on genomic DNA extracted directly from infected plant tissue. Genotyping 26 historical and 167 contemporary samples at 46 SNP loci revealed 82 unique multi-locus genotypes. The unique genotypes clustered into five groups and the majority of isolates collected in 2014 were genetically closely related, regardless of source location. The historical samples, representing several races, showed greater genetic differentiation. Overall, the SNP data indicate much of the genotypic variation found within fields was produced during asexual development, whereas overall genetic diversity may be influenced by sexual recombination on broader geographical and temporal scales.     

Economic prospects for new crops in the Southwestern United States

Agriculture in the Southwest is productive but expensive. High yields of traditional crops depend on extensive irrigation. As water costs increase and water availability is reduced, production of traditional crops will decline. New crops with low water use (and consequently lower yields) will be needed if agriculture is to persist in the region. The best candidates will be drought-tolerant species with high value products. Plants producing botanochemicals will probably be favored over those yielding pulp, energy, commodity foods, or fiber.     

Large branchiopod assemblages common to Mexico and the United States

Cu, Cd, Zn and Pb concentrations in both dissolved andparticulate phase were assessed during 1995. DataQuality Assurance was an integral part of this studyand involved all major steps of the analysis proceduresuch as sampling, sample handling, preconcentrationand determination. Desorption and redox processes clearly control thedissolved Cu and Cd profiles. Mobilisation ofdissolved Zn is small and essentially restricted tothe low salinity area and the late spring survey.Dissolved Pb shows the clearest dilution pattern. Theparameters representative of these processes(dissolved oxygen and salinity) also correlate verywell with the particulate metal profiles. In addition, the plankton activity (expressed by thechlorophyll-a levels) may influence the dissolved andparticulate metal profiles. In combination withdesorption and redox processes, seasonal variationswere induced. This revised version was published online in July 2006 with corrections to the Cover Date.     

New species of Septobasidium from southern Costa Rica and the southeastern United States

New species are described in Septobasidium, a genus of urediniomycete parasites on scale insects. One new species, S. gomezii, is described from Costa Rica, and another, S. meredithiae, is described from Louisiana. S. gomezii is most similar to S. septobasidioides, but macroscopic and microscopic differences support it being a distinct species. S. meredithiae is similar to S. alni and S. castaneum but differs from these species in several macroscopic and microscopic characters, especially when the species are observed on the same host tree and insect species. Another species collected only once in Costa Rica is listed with observations but it is not formally described here. This Septobasidium species shares some key characteristics with S. ramorum but combines a dense, compact, nearly black thallus and pigmented probasidia-like structures with spindle-shaped haustoria. Implications for taxonomy, morphological evolution and host specificity in Septobasidium are discussed.     

Two new species of Gomphidius from the Western United States and Eastern Siberia

Study of the genus Gomphidius from recent material from Asia and North America has been carried out using traditional taxonomy combined with molecular systematics. Two new species of Gomphidius (G. borealis and G. pseudoflavipes) are described, one from Eastern Siberia and a second from rarely collected habitats in the Western United States. One taxon has the longest spores reported for the genus and the second species appears to be associated with a Siberian larch.     

Spatial and temporal patterns of changes in protected areas across the Southwestern United States

Protected areas are the core units for preserving habitats and ecological processes. Yet in most regions of the world their geographic, categorical, and institutional evolution remains poorly understood. Here, we report on changes in protected areas in the Southwestern US from 1890 to 2005. Our analysis used the dates of protection of individual parcels in the region to analyze changes by: (a) designating authority (e.g., congressional, administrative), (b) managing agency, (c) protected area types (e.g., wilderness), (d) elevation, (e) ecoregion, and (f) land cover class. In the 1990s, protected area additions tripled compared with the previous decade. Bureau of Land Management (BLM) managed the most protected area after 1990, surpassing that of the US Forest Service. Prior to 1990, most protected areas were found at high elevations, but more recent additions occurred at lower elevations. Land cover types represented in protected areas changed significantly over the last century, with protected areas in forest and woodland systems added prior to 1930 and shrubland, steppe, and savanna systems added after 1980. Additions by BLM occurred mostly by administrative designation. These areas are not permanently protected and so do not provide the level of protection afforded other additions. However these additions are critical for conservation of biodiversity across the region because they occur at elevations and in ecoregions and land cover types that are minimally protected otherwise. Our analysis yielded new insights about permanency, level of protection, and spatial distribution of protected areas, characteristics critical for biodiversity conservation.     

Parasitic infection of Filaroides osleri, Capillaria aerophila and Spirocera lupi in coyotes from the Southwestern United States

A total of 181 coyotes (Canis latrans) was examined for helminth parasites Filaroides osleri, Capillari aerophila, and Spirocerca lupi. Coyote carcasses were obtained from Kansas, western Oklahoma-northern Texas, Colorado, New Mexico, Arizona and southern California. Cysts of F. osleri were present in the trachea or bronchial division in 39 (22%) coyotes. C. aerophila were present in only 7 (4%) coyotes. S. lupi lesions were present in the aorta of 59 (33%) coyotes. Esophageal infections of S. lupi were found in only 4 of 142 (3%) coyotes. F. osleri, C. aerophila and S. lupi infections were more prevalent in western Oklahoma-northern Texas, low in southern Arizona-California, and absent in northern Arizona.     

NAFTA Stories: Fears and Hopes in Mexico and the United States

NAFTA Stories: Fears and Hopes in Mexico and the United States. Ann E. Kingsolver. Boulder: Lynn Rienner Publishers, 2001. 252 pp.     

Chromosome studies of cheilanthoid ferns (Pteridaceae: Cheilanthoideae) from the western United States and Mexico

Although analyses of chromosome numbers represent a fundamental step in the study of any group of organisms, the xeric-adapted cheilanthoid ferns (Pteridaceae: subfamily Cheilanthoideae) have received little attention from cytogeneticists due to the difficulty in obtaining samples and accurate chromosome counts. In an effort to clarify patterns of chromosomal evolution in this group, we present 131 chromosome counts representing 75 taxa of cheilanthoid ferns from the western United States and Mexico. First reports are provided for 24 taxa, including the first count for the genus Cheiloplecton. Nine other taxa yielded numbers that had not been reported previously. Our data suggest that chromosome base numbers are more stable than previously thought and that much of the reported variation may involve erroneous counts. When coupled with published DNA sequence data, our counts suggest that the plesiomorphic base number of subfamily Cheilanthoideae is x = 30 and that x = 29 has arisen just once or twice among the taxa studied.     

Coccidia (Apicomplexa) from heteromyid rodents in the southwestern United States, Baja California, and northern Mexico with three new species from Chaetodipus hispidus

Fecal samples from 223 heteromyid rodents of 4 genera and 13 species were collected from California, New Mexico, and Texas and from Baja California Norte and Sonora, Mexico. Of these, 84 (38%) were infected with coccidian oocysts; 72 of 84 (86%) infected animals had only 1 species of coccidian. Eleven species of coccidia were identified including 1 cyclosporan and 10 eimerians; the cyclosporan and 2 of the eimerians are described as new species. Sporulated oocysts of Cyclospora angimurinensis n. sp. were subspheroidal, 21.9 x 19.3 (19-24 x 16-22) microns, with sporocysts lemon-shaped, 11.9 x 9.5 (9-15 x 8-11) microns; it was found in 1 of 20 (4%) Chaetodipus hispidus. Sporulated oocysts of Eimeria chaetodipi n. sp. were subspheroidal, 16.7 x 14.6 (13-19.5 x 12-17) microns, with sporocysts ovoidal, 8.7 x 6.6 (7.5-10.5 x 5-7.5) microns; it was found in 3 of 20 (15%) C. hispidus. Sporulated oocysts of Eimeria hispidensis n. sp. were subspheroidal, 20.5 x 17.4 (17-23 x 14-21) microns, with sporocysts lemon-shaped, 9.3 x 7.2 (7.5-10.5 x 5-9) microns; it was found in 4 of 20 (20%) C. hispidus.(ABSTRACT TRUNCATED AT 250 WORDS)     

The geographic structure of morphological variation in eight species of fiddler crabs (Ocypodidae: genus Uca) from the eastern United States and Mexico

Species with larger geographic distributions are more likely to encounter a greater variety of environmental conditions and barriers to gene flow than geographically‐restricted species. Thus, even closely‐related species with similar life‐history strategies might vary in degree and geographic structure of variation if they differ in geographic range size. In the present study, we investigated this using samples collected across the geographic ranges of eight species of fiddler crabs (Crustacea: Uca) from the Atlantic and Gulf coasts of North America. Morphological variation in the carapace was assessed using geometric morphometric analysis of 945 specimens. Although the eight Uca species exhibit different degrees of intraspecific variation, widespread species do not necessarily exhibit more intraspecific or geographic variation in carapace morphology. Instead, species with more intraspecific variation show stronger morphological divergence among populations. This morphological divergence is partly a result of allometric growth coupled with differences in maximum body size among populations. On average, 10% of total within‐species variation is attributable to allometry. Possible drivers of the remaining morphological differences among populations include gene flow mediated by ocean currents and plastic responses to various environmental stimuli, with isolation‐by‐distance playing a less important role. The results obtained indicate that morphological divergence among populations can occur over shorter distances than expected based on dispersal potential. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100 , 248–270.     

Genetic Analysis of a Novel Xylella fastidiosa Subspecies Found in the Southwestern United States

Xylella fastidiosa, the causal agent of several scorch diseases, is associated with leaf scorch symptoms in Chitalpa tashkentensis, a common ornamental landscape plant used throughout the southwestern United States. For a number of years, many chitalpa trees in southern New Mexico and Arizona exhibited leaf scorch symptoms, and the results from a regional survey show that chitalpa trees from New Mexico, Arizona, and California are frequently infected with X. fastidiosa. Phylogenetic analysis of multiple loci was used to compare the X. fastidiosa infecting chitalpa strains from New Mexico, Arizona, and trees imported into New Mexico nurseries with previously reported X. fastidiosa strains. Loci analyzed included the 16S ribosome, 16S-23S ribosomal intergenic spacer region, gyrase-B, simple sequence repeat sequences, X. fastidiosa-specific sequences, and the virulence-associated protein (VapD). This analysis indicates that the X. fastidiosa isolates associated with infected chitalpa trees in the Southwest are a highly related group that is distinct from the four previously defined taxons X. fastidiosa subsp. fastidiosa (piercei), X. fastidiosa subsp. multiplex, X. fastidiosa subsp. sandyi, and X. fastidiosa subsp. pauca. Therefore, the classification proposed for this new subspecies is X. fastidiosa subsp. tashke.Xylella fastidiosa is a gram-negative bacterium that multiplies within the xylem and causes serious disease problems in many diverse plant species. X. fastidiosa is considered a “new world” pathogen and is mainly found within North, Central, and South America (30). In many native plant species this bacterium exists as an apparently benign endophyte, while in other instances proliferation of X. fastidiosa within the xylem leads to disease typified by symptoms, including leaf scorch, chlorosis, stunting, branch dieback, inedible fruit, and eventually the death of the plant (4, 15). X. fastidiosa is transmitted by xylem-feeding insect vectors such as sharpshooters, leafhoppers, and spittle bugs (35). Diseases caused by X. fastidiosa include Pierce''s disease in grapes (7), citrus variegated chlorosis (CVC) (6), coffee leaf scorch (18), pecan leaf scorch (36), phony peach (41), plum leaf scald (32), and almond leaf scorch (25). X. fastidiosa has also been shown to be the causative agent of diseases found in landscape plants such as oleander leaf scorch (31), mulberry leaf scorch (14), and oak leaf scorch (3). In addition to the examples above proven through the completion of Koch''s postulates, X. fastidiosa is known to be associated with leaf scorch type diseases in several other ornamental landscape species including crape myrtle, olive, day lily, and southern magnolia (12).Chitalpa (Chitalpa tashkentensis Elias and Wisura) is an ornamental landscape plant that was developed for arid landscapes such as California, Arizona, Texas, and New Mexico. Chitalpa, originally bred in Russia and introduced into the United States in 1977, is an intergenic hybrid between desert willow (Chilopsis linearis Cav.) and Catalpa bignonioides Walt. (28). In the past, chitalpa trees across the Southwest were observed to display leaf scorch symptoms of unknown origin. X. fastidiosa was detected in many chitalpa trees that displayed leaf scorch symptoms in southern New Mexico (34). The first known occurrence of Pierce''s disease in New Mexico was reported in 2007, and the strains of X. fastidiosa found in infected New Mexico grapes were very similar to those present in chitalpa trees from the same area (33). The common use of chitalpa as a landscape plant in the Southwest coupled with the recent discovery that it can harbor X. fastidiosa strains similar to those associated with Pierce''s disease in New Mexico prompted a survey of chitalpa trees across the Southwest. The results of this survey show that chitalpa trees from New Mexico and Arizona are frequently infected with X. fastidiosa. Chitalpa plants imported into New Mexico nurseries from California were also found to contain similar strains of X. fastidiosa. A multilocus phylogenetic analysis was performed to further characterize these strains of X. fastidiosa. This analysis revealed that the X. fastidiosa isolates infecting chitalpa plants in New Mexico, Arizona, and imported into nurseries from California are highly related to each other and are distinct from the previously described subspecies fastidiosa (38).