Phylogenetic community structure: temporal variation in fish assemblage

Hypotheses about phylogenetic relationships among species allow inferences about the mechanisms that affect species coexistence. Nevertheless, most studies assume that phylogenetic patterns identified are stable over time. We used data on monthly samples of fish from a single lake over 10 years to show that the structure in phylogenetic assemblages varies over time and conclusions depend heavily on the time scale investigated. The data set was organized in guild structures and temporal scales (grouped at three temporal scales). Phylogenetic distance was measured as the mean pairwise distances (MPD) and as mean nearest‐neighbor distance (MNTD). Both distances were based on counts of nodes. We compared the observed values of MPD and MNTD with values that were generated randomly using null model independent swap. A serial runs test was used to assess the temporal independence of indices over time. The phylogenetic pattern in the whole assemblage and the functional groups varied widely over time. Conclusions about phylogenetic clustering or dispersion depended on the temporal scales. Conclusions about the frequency with which biotic processes and environmental filters affect the local assembly do not depend only on taxonomic grouping and spatial scales. While these analyzes allow the assertion that all proposed patterns apply to the fish assemblages in the floodplain, the assessment of the relative importance of these processes, and how they vary depending on the temporal scale and functional group studied, cannot be determined with the effort commonly used. It appears that, at least in the system that we studied, the assemblages are forming and breaking continuously, resulting in various phylogeny‐related structures that makes summarizing difficult.     

Benthic insects in Swedish lake-outlet streams: patterns in species richness and assemblage structure

1. We studied how species richness of three hierarchical insect species groups, namely all benthic, lotic and filtering taxa, were related to a number of environmental variables in a data set from fifteen Swedish lake outlets. 2. In partial least-squares analyses, we found that size-related factors (stream width, discharge) and velocity-related factors (current velocity, substratum particle size) were positively associated, and productivity-related factors (chlorophyll a, seston energy, conductivity) negatively associated, with the species richness of the three groups. 3. The weak and negative relationship of richness with productivity largely negated theoretical predictions, whereas the species-environment results corroborated earlier findings from running water systems. 4. The most important factors associated with the species composition of the lake outlets studied included pH, lake area, discharge, channel width and detritus. 5. Of the filter feeders, most species of blackflies (Diptera: Simuliidae) showed a negative relationship with pH. 6. A nested subset analysis demonstrated that species-poor sites did not have a subset of species found at more species-rich sites in any of the three hierarchical groups.     

Impact of drought upon fish assemblage structure in two South Carolina Piedmont streams

The effects of drought on fish assemblages were studied in the Indian Creek (228 km²) and Kings Creek (46 km²) watersheds located in the Piedmont Province of South Carolina. Water and fish samples were collected at 13 localities during drought conditions in 2000 and again under post-drought conditions in 2003. Abundance, species richness, and Simpson’s diversity were calculated for each locality, and the masses and lengths of individual fishes were measured to determine total biomass and length distributions for each species. Assemblages were significantly different from 2000 to 2003 at 10 of the 13 sample localities (χ² test for association; p < 0.05). The family Cyprinidae (minnows) was numerically dominant in both years and in both watersheds, but their dominance declined somewhat following the drought due to lower numbers of Nocomis leptocephalus and Notropis lutipinnis in 2003 collections. However, some cyprinids increased in abundance in 2003 collections, most notably Semotilus atromaculatus and Hybopsis hypsinotus. Abundance of catostomids (suckers) and ictalurids (catfish) was also decreased post drought. Conversely, centrarchids (sunfish) increased in dominance in 2003, especially the species Lepomis macrochirus and Lepomis gulosus. Many more juveniles and young of the year were observed in 2003 collections, suggesting that most species exhibited greater reproductive success following the drought. The significant differences in water chemistry observed between the two years were not associated with any change in fish community structure. Instead, we attributed the observed differences in fish assemblages to changes in habitat structure associated with higher rainfall during post-drought conditions. Finally, sample localities showed high variability in common measures of assemblage structure, including abundance, species richness, and diversity. We hypothesize that the observed variability in community structure is caused by the heterogeneous habitat structure and morphology of these small Piedmont Province streams.     

Life-history traits of invasive fish in small Mediterranean streams

We compared the life-history traits of native and invasive fish species from Catalan streams in order to identify the characters of successful invasive fish species. Most of the exotic fish species were characterized by large size, long longevity, late maturity, high fecundity, few spawnings per year, and short reproductive span, whereas Iberian native species exhibited predominantly the opposite suite of traits. Species native to the southeastern Pyrenees watershed were also significantly different from species native to the rest of the Iberian Peninsula but not native to this watershed. Iberian exotic species come predominantly from large river basins, whereas Catalan streams (and other small, coastal river basins) correspond to basins and streams of a smaller size and different hydrology, with differences in species composition and life-history traits of fish. The occurrence and spread of invasive species was not significantly related to life-history traits but to introduction date. The successful prediction of future invasive species is limited due to small differences in life-history and ecological traits between native and exotic species. Fecundity, age at maturity, water quality flexibility, tolerance to pollution and habitat seem the most discriminating life-history variables. This revised version was published online in July 2006 with corrections to the Cover Date.     

Species richness and assemblage structure of Trichoptera in Danish streams

• 1 Species richness and assemblages of Trichoptera from 157 ‘pristine’ Danish lowland stream sites were analyzed, for dependence on geographical position of the sites and simple physical variables, using two way indicator species analysis and detrended correspondence analysis.
• 2 A total of 106 species were recorded, representing ≈ 90% of the species pool known from Danish streams. Only seven species occurred at more than half the sites, whereas an additional 11 species were found at more than a quarter of the sites.
• 3 Although sites showed significant regional differences in environmental variables (stream order, width, slope and presence/absence of riparian forest), species richness and assemblages were primarily correlated with stream order, width and slope. Maximum richness was found at the largest (5th order) stream sites.
• 4 Regional differences in species assemblages were found, with several species being absent from the islands Funen and Bornholm. Species assemblages also differed between forested and non‐forested stream sites.
• 5 We found evidence that stream temperature may be of only minor importance in determining Trichoptera species richness and assemblage composition in Danish streams compared to other size‐related physical factors.

     

Local and regional influences on patterns of parasite species richness of central European fishes

Local, regional and global influences on the patterns of parasite species richness of 39 freshwater fish species from Central Europe were investigated. Host local abundance and host occurrence were considered respectively as local and regional factors, while host geographical range in longitude and latitude was considered as a global factor. Influences of size, ecology and behavior of hosts were also included in a comparative analysis using the independent contrasts method. We considered host habitat, host diet, host shoaling behavior and mobility. We found a positive relationship between local occurrence of fish and global range of their distribution. We confirmed previous findings showing the importance of host behavior and ecology on the variability of parasite species richness. Second, we showed how a global pattern, such as host geographical range, may affect the variability in parasite species richness through its effects on local abundance and distribution of hosts. A negative relationship between endoparasite species richness and host longitudinal range was found. This suggests that fish with eastern distribution live in the boundary of their distribution in Central Europe far from their center of distribution, which should also be characterized by a higher diversity of parasites.     

Genetic differentiation over small spatial scales in the absence of physical barriers in an Australian rainforest stream fish

This study investigated the genetic population structure of the regionally endemic rainforest fish Cairnsichthys rhombosomoides by analysing sequence variation in the mitochondrial control region. The results indicated that individual populations, even those located in close proximity (5 km), were highly distinct. The pattern of genetic structure cannot be explained by physical barriers to gene flow and was not consistent with models based on separation of populations by distance or any hierarchical structuring within the riverine network. The management implications of the observed genetic structure are discussed.     

The response of fish size and species diversity to environmental gradients in two Neotropical coastal streams

Hydrobiologia - This study investigated the effects of environmental variation on fish diversity patterns in two coastal streams in northwestern Ecuador. Specifically, we examined the role of...     

The coexistence of fish species in streams: relationships between assemblage attributes and trophic and environmental variables

Diet overlap and niche breadth are well-known species traits from trophic ecology that can assist in explaining how species interact and coexist as well as the ecological mechanisms that influence biodiversity. In the present study, we analyzed the relationships between these trophic variables and indicators of resource availability with some attributes of fish assemblages (species richness, Shannon diversity index, evenness, density and individual body size). The physical and chemical characteristics of the biotopes (topography, water quality and conservation of slopes) were examined to identify possible patterns. Monthly sampling using electrofishing was conducted in 2003 along five streams located in the Cuiabá River watershed. The relationships between environmental variables and attributes of fish assemblages were evaluated using Spearman correlation. Species richness and abundance varied among streams, with higher values (54 and 82 species) found in low-gradient streams that drained small swampy areas discharging in Cuiabá River. Diet overlap showed significant and negative correlations with species richness, the diversity index, abundance, variation in body size and food availability and positive correlations with evenness and niche breadth. Environments that had greater food availability had a reduced variety of food items (smaller amplitude) and distinct values in terms of dietary overlap. Nevertheless, to explain resource partitioning in a fish assemblage (overlap), it is necessary to consider food availability and niche breadth (degree of trophic specialization) beyond the interaction of these variables with species richness and density. In conclusion, high diversity and abundance values were strongly associated with a high degree of trophic specialization (low amplitude of trophic niche) and a small degree of overlap in the diet.     

胶州湾近岸浅水区鱼类群落结构及多样性

根据2009年3月-2010年2月在胶州湾西北部近岸浅水区进行的鱼类逐月定置网调查数据,采用生态多样性指数和多元统计分析等方法研究了该海域的鱼类群落结构及多样性特征.结果表明:调查共鉴定出44种鱼类,其中海洋性27种,河口性鱼类17种.鱼类种类组成与底层水温和盐度有密切关系.胶州湾近岸浅水区鱼类群落Margalef种类丰富度指数(R)变化范围为0.33-3.50,Shannon-Wiener多样性指数(H’)为0.42-2.25,Pielou均匀度指数(J’)为0.23-0.93.聚类分析(CLUSTER)和多维标度排序(MDS)分析表明,不同鱼类种类组成的各月份样品可划分为3个组分:水温较低的冬季组G1(12月-翌年4月)、水温次高的春秋季组G2(5-6月、10-11月)和水温最高的夏季组G3(7-9月).其中G1的典型种主要为尖海龙(Syngnathus acus)、方氏云鳚(Enedrias fangi)和玉筋鱼(Ammodytes personatus)等冷温性常栖类群种类,G2的主要典型种为鳀鱼(Engraulis japonicus)和尖海龙,G3的主要典型种为鲐鱼(Scomber japonicus)、细条天竺鱼(Apogonichthys lineatus)和普氏缰虾虎鱼(Amoya pflaumi)等洄游性鱼类.单因子相似性分析(ANOSIM)表明,3个月份组间鱼类群落结构差异显著,不同月份组间两两差异均显著.生物-环境分析(BIOENV)表明,底层水温是影响胶州湾近岸浅水区鱼类群落结构时间变化的主要环境因子.在胶州湾内近岸浅水区发现40余种幼鱼,但占优势的主要为低值鱼类,表明胶州湾的产卵、肥育场功能有所下降,应加强胶州湾近岸水域生态环境和渔业资源的保护及修复.     

西部地区动物资源现状及持续发展对策

中国西部地区包括陕西、 宁夏、 青海、 新疆、 西藏和内蒙古西部, 其总面积占国土总面积的46.52％,人口占全国总人口的8.33％。共有陆生脊椎动物1273种,占国内2414种的52.73％。其中：两栖类81种,占国内两栖类的28.52％;爬行类119种,占34.69%;鸟类781种,占62.83％;兽类292种,占53.66%。有259种仅分布在西部地区,占西部地区陆栖脊椎动物种数的20.35％,我国大型有蹄类几乎全部集中在西部地区。这里有国家保护的陆栖脊椎动物174种,占全国333种的52.25％; 我国特有鸟、兽54种,占国内特有鸟、兽的60.67%。西部地区丰富的动物资源蕴藏着巨大的经济价值、科学研究价值和生态效益。因环境破坏,乱捕滥猎,近一个世纪以来确知已有普氏野马(Equus przewalskii)、高鼻羚羊(Saiga tatarica)、虎(Panthera tigris)和灰冠鸦雀(Paradoxornis przewalskii)4个物种在西部地区消失。朱(Napponia nippon)已成为极危种类,大熊猫(Ailuropoda melanoleuca)、普氏原羚(Procapra przewalskii)也已接近极危种的界限。一些主要经济动物种群数量逐年下降,马麝(Moschus sifanicus)和林麝(M. berezovskii)分别以年均8.97％和8.44％的速率下降(n=12)。马鹿(Cervus elaphus),白唇鹿(C. albirostris),野牦牛(Bos gruniens)、野驴(Asinus spp.)、藏原羚(Procapra picticaudata)、藏羚（Pantholops hodgsoni)、岩羊(Psendois nayaur)、鹅喉羚(Gazella subgutturosa)等大中型有蹄类遭大肆捕杀。1963年以后得以休养生息正在恢复的动物资源再次遭到破坏。有的种类,如盘羊(Ovis ammon)、野骆驼(Camelus ferus)种群数量分别以年10.06%和10.89％的速率增加(n=16)。为达到持续利用的目的,本文提出六项持续发展对策：加强自然保护区建设、管理;建立各省、自治区自然保护基金;保护栖息环境;迁地保护珍稀濒危物种;人工复壮孤隔种群;提倡人工驯养野生经济动物;人为扩大某些珍稀和经济动物分布区。     

Effect of fire on benthic algal assemblage structure and recolonization in intermittent streams

Abstract: Dry biofilm on rocks and other substrata forms an important drought refuge for benthic algae in intermittent streams following the cessation of flow. This dry biofilm is potentially susceptible to disturbance from bushfires, including direct burning and/or scorching and damage from radiant heat, particularly when streams are dry. Therefore, damage to dry biofilms by fire has the potential to influence algal recolonization and assemblage structure in intermittent streams following commencement of flow. The influence of fire on benthic algal assemblages and recolonization was examined in intermittent streams of the Grampians National Park, Victoria, Australia, using a field survey and manipulative field experiment. The field survey compared assemblages in two intermittent streams within a recently burnt area (within 5 months of the fire) with two intermittent streams within an unburnt area. The two burnt streams were still flowing during the fire so most biofilms were not likely to be directly exposed to flames. Considerable site‐to‐site and stream‐to‐stream variation was detected during the field survey, which may have obscured potential differences attributable to indirect effects of the fire. The manipulative field experiment occurred in two intermittent streams and consisted of five treatments chosen to replicate various characteristics of bushfires that may influence dry biofilms: dry biofilm exposed directly to fire; dry biofilm exposed to radiant heat; dry biofilm exposed to ash; and two procedural controls. After exposure to the different treatments, rocks were replaced in the streams and algae were sampled 7 days after flow commenced. Differences occurred across treatments, but treatment differences were inconsistent across the two streams. For example, direct exposure to fire reduced the abundance of recolonizing algae and altered assemblage structure in both streams, while radiant heat had an effect on assemblage structure in one stream only. The manipulative field experiment is likely to have represented the intensity of a small bushfire only. Nonetheless, significant differences across treatments were detected, so these experimental results suggest that fire can damage dry biofilms, and hence, influence algal recolonization and assemblage structure in intermittent streams.     

黄河流域被子植物和陆栖脊椎动物丰富度格局及其影响因子

生物多样性的大尺度空间分布格局及其形成机制一直是生态学和生物地理学的核心内容。黄河流域是我国重要的生态屏障, 明确该区域动植物多样性分布格局及其影响因素, 对我国黄河流域生态保护和高质量发展具有重要意义。本研究通过收集黄河流域被子植物和陆栖脊椎动物分布数据, 结合气候、环境异质性和人类活动等信息, 探讨了黄河流域被子植物和陆栖脊椎动物物种丰富度格局及其主要影响因素。结果表明, 黄河流域被子植物和陆栖脊椎动物物种丰富度在区域尺度具有相似的分布格局: 南部山地动植物物种丰富度最高, 而东部高寒区和北部干旱区物种丰富度最低。回归树模型表明, 冠层高度范围和净初级生产力范围分别是黄河流域被子植物和陆栖脊椎动物物种丰富度最重要的预测因子; 当移除空间自相关影响后, 环境异质性和气候因子依然对区域尺度的动植物物种丰富度具有较高且相似的解释度。表明环境异质性和气候共同决定了黄河流域被子植物和陆栖脊椎动物物种丰富度格局, 而人类使用土地面积并不是影响黄河流域动植物物种丰富度格局的主要因子。因此, 在未来的研究中若针对不同区域筛选出更精准的环境驱动因子或选用更多不同类别的环境异质性因子进行分析, 将有助于更深入理解物种多样性格局的成因。     

BIODIVERSITY RESEARCH: Native and introduced fish species richness in Mediterranean streams: the role of multiple landscape influences

Aim To examine the role of multiple landscape factors on the species richness patterns of native and introduced freshwater fish. Location Mediterranean streams, south‐western Iberian Peninsula, Europe (c. 87,000 km²). Methods We used a dataset of fish occurrences from 436 stream sites. We quantified the incremental explanatory power of multiple landscape factors in native, introduced, and overall local species richness using regression analysis. First, we related variation in local species richness across river basins to regional species richness (here, the basin species pool), area and factors of climate and topography. Second, we related within‐river basin local species richness to site’s climate and topography, and spatial structure derived from Principal Coordinates of Neighbour Matrices approach, after testing for species richness spatial autocorrelation; predicted local richness was mapped. Results Patterns of local species richness across river basins were strongly associated with regional species richness for overall, native and introduced species; annual rainfall showed a significant incremental contribution to variation in introduced species richness only. Within river basins, environmental factors were associated with local richness for the three species groups, though their contributions to the total explained variation were inferior to those of spatial factors; rainfall seasonality and stream slope were the most consistent environmental correlates for all species groups, while the influence of spatial factors was most prevalent for native species. Main conclusions Landscape factors operating among and within river basins seem to play a relevant role in shaping local species richness of both native and introduced species, and may be contingent on basin‐specific contexts. Nevertheless, local factors, such as habitat characteristics and biotic interactions and human‐induced disturbances may also be at play. Multiscale approaches incorporating a multitude of factors are strongly encouraged to facilitate a deeper understanding of the biodiversity patterns of Mediterranean streams, and to promote more effective conservation and management strategies.     

Species richness of resident and transient coral-dwelling fish responds differentially to regional diversity

Aim To determine whether the diversity of resident and transient coral‐dwelling fish responds differentially to gradients in regional species richness. Location Three regions in the Indo‐Pacific (Red Sea, western Indian Ocean, Great Barrier Reef) which contain increasingly larger regional diversities of reef fish. Methods I surveyed fish residing within branching coral species. Fish species were a priori categorized as resident or transient based on the degree of affiliation between the fish and live coral. To compare among regions that differ in coral diversity I used a modified species–volume relationship (SVR). Each point in the SVR represents the total number of fish species, resident or transient, found within the cumulative volume of a specific coral species. Empirical SVRs were further compared with random‐placement null models. Results For transient species, I found that the observed SVRs did not differ consistently from those expected from random samples drawn from the corresponding regional species pools. In addition, for a given volume of coral, more fish species were found in richer regions, indicating strong regional influences on local diversity. In contrast, resident richness was lower than that expected from random samples of the species pool, and richness in rich regions was reduced comparably more than in poor regions. The SVRs of resident species were similar among regions with different regional diversities. Main conclusion These results suggest that, within coral species, transient fish richness is mostly influenced by stochastic allocation of species from the regional pool. Conversely, richness of resident species within a coral species is limited, making it independent of regional diversity. Since higher regional diversity of resident fish was not accompanied by higher richness per coral species or by decreased niche breadth, higher regional diversity of resident fish species must be rooted in higher coral richness. Consequently, ecological interactions between functional groups (coral and fish) can be powerful drivers of regional biodiversity.     

Altitudinal variation in fish assemblage diversity in streams of the central Andes of Colombia

This study documents differences in fish assemblages for 32 freshwater streams located between 258 and 2242 m a.s.l. on the eastern slopes of the central range of the Colombian Andes. A total of 2049 fishes belonging to 62 species, 34 genera and 16 families were collected. Species richness declined rapidly with altitude; nearly 90% of the species were recorded between 250 and 1250 m a.s.l. Three of the four physico‐chemical variables, of the water, temperature, dissolved oxygen and pH, explained 53·5% of the variation in species richness along the altitudinal gradient, with temperature the most important (37·6%). An analysis of species composition showed that the distinctiveness of the fish fauna increased with elevation, with the greatest turnover observed between 1000 and 1750 m a.s.l. On this altitudinal gradient, turnover was dominated by the loss of species rather than gain, and dominance by just a few species was greater at higher elevations. Turnover was also observed along the altitudinal gradient in the structure of the three functional groups (torrential, pool and pelagic species). The study focused on understanding the pattern of diversity of fish communities inhabiting the Andes in Colombia. Anthropogenic effects on the altitudinal distribution of fish species in the region, however, are largely unknown and would require further investigations.     

Disentangling stand and environmental correlates of aboveground biomass in Amazonian forests

Tropical forests contain an important proportion of the carbon stored in terrestrial vegetation, but estimated aboveground biomass (AGB) in tropical forests varies two‐fold, with little consensus on the relative importance of climate, soil and forest structure in explaining spatial patterns. Here, we present analyses from a plot network designed to examine differences among contrasting forest habitats (terra firme, seasonally flooded, and white‐sand forests) that span the gradient of climate and soil conditions of the Amazon basin. We installed 0.5‐ha plots in 74 sites representing the three lowland forest habitats in both Loreto, Peru and French Guiana, and we integrated data describing climate, soil physical and chemical characteristics and stand variables, including local measures of wood specific gravity (WSG). We use a hierarchical model to separate the contributions of stand variables from climate and soil variables in explaining spatial variation in AGB. AGB differed among both habitats and regions, varying from 78 Mg ha^?1 in white‐sand forest in Peru to 605 Mg ha^?1 in terra firme clay forest of French Guiana. Stand variables including tree size and basal area, and to a lesser extent WSG, were strong predictors of spatial variation in AGB. In contrast, soil and climate variables explained little overall variation in AGB, though they did co‐vary to a limited extent with stand parameters that explained AGB. Our results suggest that positive feedbacks in forest structure and turnover control AGB in Amazonian forests, with richer soils (Peruvian terra firme and all seasonally flooded habitats) supporting smaller trees with lower wood density and moderate soils (French Guianan terra firme) supporting many larger trees with high wood density. The weak direct relationships we observed between soil and climate variables and AGB suggest that the most appropriate approaches to landscape scale modeling of AGB in the Amazon would be based on remote sensing methods to map stand structure.