Influence of membrane structure on the kinetics of carrier-mediated ion transport through lipid bilayers

Charge-pulse relaxation experiments of valinomycin-mediated Rb⁺ transport have been carried out in order to study the influence of membrane structure on carrier kinetics. From the experimental data the rate constants of association (k_R) and dissociation (k_D) of the ion-carrier complex as well as the rate constants of translocation of the complex (k_MS) and of the free carrier (k_S) could be obtained. The composition of the planar bilayer membrane was varied in a wide range. In a first series of experiments, membranes made from glycerolmonooleate dissolved in different n-alkanes (n-decane to n-hexadecane), as well as solvent-free membranes made from the same lipid by the Montal-Mueller technique were studied. The translocation rate constants k_S and k_MS were found to differ by less than a factor of two in the membranes of different solvent content. Much larger changes of the rate constants were observed if the structure of the fatty acid residue was varied. For instance, an increase in the number of double bonds in the C₂₀ fatty acid from one to four resulted in an increase of k_S by a factor of seven and in an increase of k_MS by a factor of twenty-four. The stability constant K = k_R/k_D of the ion-carrier complex as well as the translocation rate constants k_S and k_MS were found to depend strongly on the nature of the polar headgroup of the lipid. The incorporation of cholesterol into glycerolmonooleate membranes reduced k_R, k_MS and k_S up to seven-fold.     

Production of hemicellulases by three fungi pathogenic to sugar cane

Three fungal pathogens, Ceratocystis paradoxa (CP), Cephalosporium sacchari (CS), and Marasmius sacchari (MS) were screened for the production of hemicellulose-degrading enzymes (hemicellulases) by induction on bagasse hemicellulose B, and on a commercial preparation of hemicellulose (crude xylan). All three pathogen initially grew poorly on hemicellulose B and “crude xylan” as carbon source. Profuse growth was induced, however, by using mixtures of hemicellulose B and sucrose in the culture media for CP and CS until the organisms were capable of growing on media containing only hemicellulose B. These isolates were classified as CS₁ and CP₁. Profuse growth occurred when CS and CP were grown on carboxymethylcellulose (CMC) and also when these cultures were transferred to media containing only hemicellulose B. These isolates were classified as CS₂ and CP₂. When the above four isolates were grown on hemicellulose B as carbon source in submerged liquid culture, only CP₁ did not produce any extra-cellular hemicellulase(s), and CP₂ produced the highest yield of enzyme. CS₂ and CP₂ also produced extra-cellular CM-cellulase(s). The CP₂-culture isolate was selected for the study of conditions for the optimal production of extra-cellular hemicellulase(s). A preliminary study of the action of enzymes from CS and CP isolated on hemicellulose is reported.     

The influence of external potassium on the inactivation of sodium currents in the giant axon of the squid, Loligo pealei

Isolated giant axons were voltage-clamped in seawater solutions having constant sodium concentrations of 230 mM and variable potassium concentrations of from zero to 210 mM. The inactivation of the initial transient membrane current normally carried by Na⁺ was studied by measuring the Hodgkin-Huxley h parameter as a function of time. It was found that h reaches a steady-state value within 30 msec in all solutions. The values of h _∞, τ_h, α_h,and β_h as functions of membrane potential were determined for various [K _o]. The steady-state values of the h parameter were found to be inversely related, while the time constant, τ_h, was directly related to external K⁺ concentration. While the absolute magnitude as well as the slopes of the h _∞ vs. membrane potential curves were altered by varying external K⁺, only the magnitude and not the shape of the corresponding τ_h curves was altered. Values of the two rate constants, α_h and β_h, were calculated from h_∞ and τ_h values. α_h is inversely related to [K_o] while β_h is directly related to [K_o] for hyperpolarizing membrane potentials and is independent of [K_o] for depolarizing membrane potentials. Hodgkin-Huxley equations relating α_h and β_h to E_m were rewritten so as to account for the observed effects of [K_o]. It is concluded that external potassium ions have an inactivating effect on the initial transient membrane conductance which cannot be explained solely on the basis of potassium membrane depolarization.     

The interaction of nucleotides and yeast hexokinase

The kinetics of ethenoadenosine triphosphate (?ATP) as the phosphate donor in the phosphoryl transfer reaction of hexokinase were examined to obtain the K_m′s, V's, and K_α's for the nucleotide and sugar. Dissociation constants for eATP and ?ADP with hexokinase were obtained from fluorometric measurements and compared with similar constants obtained kinetically. Other selected nucleoside triphosphates were used as phosphate donors in the hexokinase reaction and their kinetic constants were obtained. Reactions were also performed using two nucleotides simultaneously as phosphorylating substrates for the hexokinase reaction in an attempt to find the individual dissociation constants, K_m′s and K_i′s. These were compared with the K_m′s obtained from using the nucleotides separately in the hexokinase reaction. From these kinetic and fluorescence binding studies, evidence is presented supporting the postulate that the K_m′s are primarily dissociation constants in a random bi-bi mechanism. Analysis of the K_m values provides additional evidence to support the importance of the amino group in position 6 on the purine ring as a hydrogen-bond acceptor during binding. It was found that ?CTP was a much better hexokinase substrate than CTP. These observations suggest that the V for this reaction is highly dependent upon the size of the nucleotide.     

Responses of marine macroalgae to hydrogen-peroxide stress

In this study, we determined the antioxidative potential of 15 marine macroalgae by measuring the photosynthetic efficiency under artificial oxidative stress after a 30-min exposure to a series of ascending H₂O₂ concentrations. Species exhibiting high maximum quantum yields (F_v/F_m values) were regarded as not susceptible towards H₂O₂ stress. In addition to the short-term stress experiments, the antioxidative defense systems (enzymatic and non-enzymatic) of selected algal species under longer exposure times to H₂O₂ were investigated.Species with striking photosynthetic activity under H₂O₂ stress were Chaetomorpha melagonium (Chlorophyta), showing 40% reduced F_v/F_m as compared to the control after 8 days of exposure to 20 mM H₂O₂. In Fucus distichus (Phaeophyta) F_v/F_m decreased to 50% of the control under the same exposure conditions. Polysiphonia arctica (Rhodophyta) exhibited highest F_v/F_m values with a reduction of only 25%, therefore possessing the highest antioxidative potential of the investigated species.In P. arctica the activities of the antioxidative enzymes superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX) and glutathione reductase (GR), as well as the pool size of the antioxidant ascorbic acid were investigated. When exposed to different H₂O₂ concentrations (0-2 mM) over 6 days, the intrinsic activities of SOD and GR were stimulated. In a kinetic study over 8 days, the activity of antioxidative enzymes APX and CAT as well as ascorbic acid content were recorded. APX activity was much higher in H₂O₂-treated thalli at the end of the experiment than in the control, also CAT activity increased significantly with increasing H₂O₂ stress. In parallel, ascorbic acid content was reduced under high H₂O₂ concentrations. Furthermore, by using GC-MS techniques in P. arctica bromophenolic compounds with antioxidative properties were identified.This study shows that the measurement of the in vivo fluorescence of photosystem II is a suitable tool to determine the effect of oxidative stress on macroalgae. From these studies it is obvious that different algal species have varying strategies against oxidative stress which correlate with zonation on the shore.     

thyA as a Selection Marker in Construction of Food-Grade Host-Vector and Integration Systems for Streptococcus thermophilus

We constructed food-grade host-vector and integration systems for Streptococcus thermophilus by using a thymidylate synthase gene (thyA) as the selection marker. Two thyA genes, thyA_St and thyA_Lb, were cloned from S. thermophilus and Lactobacillus delbrueckii subsp. bulgaricus, respectively. Thymidine-requiring mutants of S. thermophilus were obtained after successive cultures in the presence of trimethoprim, and one of them, TM1-1, was used as the host. Food-grade vectors were constructed by using either thyA_St or thyA_Lb as the selection marker. Transformants of TM1-1 created by using these vectors were selected for thymidine autotrophy as efficiently as for erythromycin resistance. By using the host-vector system developed in this way, a foreign amylase gene (amyA) was expressed in TM1-1 and was also integrated into the chromosome by use of a temperature-sensitive integration vector constructed with thyA_Lb as the selection marker via a double-crossover event. The results obtained show that thyA is an efficient and safe selection marker for S. thermophilus that is suitable for food applications.     

Molecular typing of the self-incompatibility locus of Turkish sweet cherry genotypes reflects phylogenetic relationships among cherries and other Prunus species

Self-incompatibility of sweet cherry (Prunus avium L.) is controlled by the multiallelic S-locus. While many cultivars and wild accessions have been S-genotyped, only limited data are available on accessions native to the center of origin of this species. Therefore, this study was carried out to determine the S-genotype of 11 landrace cultivars and 17 local genotypes selected from populations growing wild at the Black Sea coast. Eleven sweet cherries (S ₁–S ₇, S ₁₀, and S ₁₂–S ₁₄) and some wild cherries (S ₁₇–S ₁₉, S _21/25, and S ₃₁) S-RNase alleles were detected. The results indicate that Turkish cultivars represent a broader gene pool as compared with international cultivars. A new (S ₃₇) and a doubtful allele (provisionally labelled as S _7m) as well as the sour cherry S ₃₄-allele were identified in sweet cherry. These data and others (SSR variants within the S ₁₃-RNase introns) confirmed that allele pools of sweet and sour cherries in the Black Sea region are overlapping. A new cross-incompatibility group, XLV (S ₂ S ₁₈), was also proposed. Allele-specific primers were designed for S ₁₇–S ₁₉, S _21/25, S ₃₄, and S ₃₇. A phylogenetic analysis of the cherry S ₃₁-RNase and its trans-specific sister alleles reliably mirrored the assumed length of the time period after the divergence of species in the subgenera Cerasus and Prunophora. Most variations (insertions/deletions and single-nucleotide polymorphisms) in the S-RNase gene were silent and, hence, have not been exposed to natural selection. The results are discussed from the aspects of S-allele evolution and phylogenetic relationships among cherries and other Prunus species.     

Biodegradation of microcystin-LR and-RR by a novel microcystin-degrading bacterium isolated from Lake Taihu

Microcystin-LR (MC-LR) and microcystin-RR (MC-RR) are the two most common microcystins (MCs) present in fresh water posing a direct threat to public health because of their hepatotoxicity. A novel MC-degrading bacterium designated MC-LTH1 capable of degrading MC-LR and -RR was isolated, and the degradation rates and mechanisms of MC-LR and -RR for this bacterium were investigated. The bacterium was identified as Bordetella sp. and shown to possess a homologous mlrA gene responsible for degrading MCs. To the best of our knowledge, this is the first report of mlrA gene detection in Bordetella species. MC-LR and -RR were completely degraded separately at rates of 0.31 mg/(L h) and 0.17 mg/(L h). However, the degradation rates of MC-LR and -RR decreased surprisingly to 0.27 mg/(L h) and 0.12 mg/(L h), respectively, when both of them were simultaneously present. Degradation products were identified by high performance liquid chromatography coupled with time-of-flight mass spectrometry. Adda (m/z 332.2215, C₂₀H₂₉NO₃) commonly known as a final product of MC degradation by isolated bacteria was detected as an intermediate in this study. Linearized MC-LR (m/z 1013.5638, C₄₉H₇₆N₁₀O₁₃), linearized MC-RR (m/z 1056.4970, C₄₉H₇₇N₁₃O₁₃), and tetrapeptide (m/z 615.3394, C₃₂H₄₆N₄O₈) were also detected as intermediates. These results indicate that the bacterial strain MC-LTH1 is quite efficient for the detoxification of MC-LR and MC-RR, and possesses significant bioremediation potential.     

Synthesis of xylan-graft-poly(l-lactide) copolymers via click chemistry and their thermal properties

Di-O-(6-azidohexanoyl)-xylan-graft-poly(l-lactide)s (XylC6N₃-g-PLLAs) were prepared by grafting propargyl-terminated poly(l-lactide) onto di-O-(6-azidohexanoyl)-xylan (XylC6N₃) via click chemistry. Di-O-(6-azidohexanoyl)-xylan (XylC6N₃) was prepared via two steps from xylan extracted from eucalyptus kraft pulp with aqueous sodium hydroxide solution. Propargyl-terminated poly(l-lactide)s (PLLA) with three different molecular weights were synthesized via ring-opening polymerization of l-lactide using propargyl alcohol as initiator and tin (II) octanoate (Sn(Oct)₂) as catalyst. XylC6N₃ and propargyl-terminated PLLAs were treated with N,N,N′,N′,N″-pentamethyldiethylenetriamine (PMDETA) and copper(I) bromide, and the graft copolymers XylC6N₃-g-PLLAs were obtained. DSC measurements revealed that the glass transition temperatures (T_g) of the copolymers decreased compared to that of XylC6N₃, suggesting that the grafted PLLA side-chains act as an internal plasticizer for xylan. TGA measurements revealed that XylC6N₃-g-PLLAs had higher decomposition temperatures than those of XylC6N₃ or PLLA, and that the decomposition temperatures of the copolymers increased with decrease in the number of PLLA side-chains grafted to the xylan main-chain.     

Comparison of cell-walls of Lolium multiflorum with cotton cellulose in relation to their digestion with enzymes associated with cellulolysis

Activities of several enzymes associated with cellulolysis were compared using as substrates cell-walls of Lolium multiflorum and cotton cellulose. Purified enzymes C₁ (see Ref. 1 for definition), C._x (CM-cellulase) and β-glucosidase were employed as well as culture filtrates containing C_x. Activities were determined by ability to digest the substrates and to release H₂O-soluble phenolic compounds from the grass cell-walls. The culture filtrates most active on cotton cellulose were obtained using the fungi Trichoderma viride and Fusarium solani; with grass cell-walls the most active were from T. viride, Gliocladium roseum, a species of Basidiomycetes, and one strain of Myrothecium verrucaria (IMI Strain 25 291). For the crude enzyme preparations tested, there were highly significant correlations between the digestibility of grass cell-walls and the UV-absorption of the filtrate at λ_max 290 nm and at λ_max 324 nm but there was no significant correlation between the digestibility of grass cell-walls and that of cotton cellulose. Partially purified C₁ and C_x from two different fungal sources showed activity on both substrates. Differences in MW of the H₂O-soluble phenolic compounds obtained by treatment of grass cell-walls with C₁ and C_x components suggest that these enzymes could have different modes of action. Synergism between C₁ and C_x from T. koningii occurred with both substrates but with C₁ and C_x from F. solani synergism only occurred with cotton cellulose.     

A nhaD Na/Hantiporter and a pcd homologues are among the Rhodothermus marinus complex I genes

The NADH:menaquinone oxidoreductase (Nqo) is one of the enzymes present in the respiratory chain of the thermohalophilic bacterium Rhodothermus marinus. The genes coding for the R. marinus Nqo subunits were isolated and sequenced, clustering in two operons [nqo₁ to nqo₇ (nqo_A) and nqo₁₀ to nqo₁₄ (nqo_B)] and two independent genes (nqo₈ and nqo₉). Unexpectedly, two genes encoding homologues of a NhaD Na⁺/H⁺ antiporter (NhaD) and of a pterin-4α-carbinolamine dehydratase (PCD) were identified within nqo_B, flanked by nqo₁₃ and nqo₁₄. Eight conserved motives to harbour iron-sulphur centres are identified in the deduced primary structures, as well as two consensus sequences to bind nucleotides, in this case NADH and FMN. Moreover, the open-reading-frames of the putative NhaD and PCD were shown to be co-transcribed with the other complex I genes encoded by nqo_B. The possible role of these two genes in R. marinus complex I is discussed.     

Genotypic variation in carboxylation of tomatoes

The gas exchange characteristics of 24 genotypes of Lycopersicon esculentum Mill. and one of L. minutum were measured with an infrared gas analyzer and dew point hygrometer in an open system. Net carbon exchange (NCE) and transpiration rate were measured at 50, 100, 150, and 300 μ1 1⁻¹ CO₂, and a regression of NCE versus internal lead [CO₂] estimates was calculated. The slope of the regression curve at the CO₂ compensation point was used as the measure of carboxylation efficiency (CE). Significant genotypic differences for CE were obtained. Differences in CE did not appear to be due to differences in diffusive resistance defined as the sum of the boundary layer resistance (r_a) and the stomatal plus cuticular resistance (r₁). There was no correlation (r = -0.07) between (r_a + r₁) and CE. Within groups with nonsignificantly different means for (r_a + r₁) there were genotypes with extremes for CE.     

Biochemical and Biophysical Characterization of the Two Isoforms of cbb3-Type Cytochrome c Oxidase from Pseudomonas stutzeri

The cbb₃-type cytochrome c oxidases (cbb₃-CcOs) are members of the heme-copper oxidase superfamily that couple the reduction of oxygen to translocation of protons across the membrane. The cbb₃-CcOs are present only in bacteria and play a primary role in microaerobic respiration, being essential for nitrogen-fixing endosymbionts and for some human pathogens. As frequently observed in Pseudomonads, Pseudomonas stutzeri contains two independent ccoNO(Q)P operons encoding the two cbb₃ isoforms, Cbb₃-1 and Cbb₃-2. While the crystal structure of Cbb₃-1 from P. stutzeri was determined recently and cbb₃-CcOs from other organisms were characterized functionally, less emphasis has been placed on the isoform-specific differences between the cbb₃-CcOs. In this work, both isoforms were homologously expressed in P. stutzeri strains from which the genomic version of the respective operon was deleted. We purified both cbb₃ isoforms separately by affinity chromatography and increased the yield of Cbb₃-2 to a similar level as Cbb₃-1 by replacing its native promoter. Mass spectrometry, UV-visible (UV-Vis) spectroscopy, differential scanning calorimetry, as well as oxygen reductase and catalase activity measurements were employed to characterize both cbb₃ isoforms. Differences were found concerning the thermal stability and the presence of subunit CcoQ. However, no significant differences between the two isoforms were observed otherwise. Interestingly, a surprisingly high turnover of at least 2,000 electrons s⁻¹ and a high Michaelis-Menten constant (K_m ∼ 3.6 mM) using ascorbate–N,N,N′,N′-tetramethyl-p-phenylenediamine dihydrochloride (TMPD) as the electron donor were characteristic for both P. stutzeri cbb₃-CcOs. Our work provides the basis for further mutagenesis studies of each of the two cbb₃ isoforms specifically.     

Modelling mixing parameters in concentric-tube airlift bioreactors

Axial dispersion of the liquid phase was investigated in a concentric-tube airlift bioreactor (RIMP: V _L=0.70?m³) as a whole and in the separate zones (riser, downcomer, gas-separator) using the axial dispersion model. The axial dispersion number Bo and the axial dispersion coefficient, D _ax were determined from the output curves to an initial Dirac pulse, using the tracer response technique. They were analyzed in relation to process and geometrical parameters, such as: gas superficial velocity, ν_SGR; top clearance, h _S; bottom clearance, h _B, and resistances at downcomer entrance expressed as A _d/A _R ratio. Correlations between Bodenstein numbers in the overall bioreactor and riser and downcomer sections (Bo_T,Bo_R,Bo_D) and the geometrical and process parameters were developed, which can allow to assess the complex influence of these parameters on liquid axial dispersion.     

Effects of Partial Replacement of Corn with Glycerin on Ruminal Fermentation in a Dual-Flow Continuous Culture System

The objective of this study was to evaluate the effects of partially replacing dry ground corn with glycerin on ruminal fermentation using a dual-flow continuous culture system. Six fermenters (1,223 ± 21 ml) were used in a replicated 3x3 Latin square arrangement with three periods of 10 d each, with 7 d for diet adaptation and 3 d for sample collections. All diets contained 75% concentrate and three dietary glycerin levels (0, 15, and 30% on dry matter basis), totaling six replicates per treatment. Fermenters were fed 72 g of dry matter/d equally divided in two meals/d, at 0800 and 2000 h. Solid and liquid dilution rates were adjusted daily to 5.5 and 11%/h, respectively. On d 8, 9, and 10, samples of 500 ml of solid and liquid digesta effluent were mixed, homogenized, and stored at -20°C. Subsamples of 10 ml were collected and preserved with 0.2 mL of a 50% H₂SO₄ solution for later determination of NH₃-N and volatile fatty acids. Microbial biomass was isolated from fermenters for chemical analysis at the end of each experimental period. Data were analyzed using the MIXED procedure in SAS with α = 0.05. Glycerin levels did not affect apparent digestibility of DM (P _Lin. = 0.13; P _Quad. = 0.40), OM (P _Lin. = 0.72; P _Quad. = 0.15), NDF (P _Lin. = 0.38; P _Quad. = 0.50) and ADF (P _Lin. = 0.91; P _Quad. = 0.18). Also, glycerin inclusion did not affect true digestibility of DM (P _Lin. = 0.35; P _Quad. = 0.48), and OM (P _Lin. = 0.08; P _Quad. = 0.19). Concentrations of propionate (P < 0.01) and total volatile fatty acids (P < 0.01) increased linearly and concentrations of acetate (P < 0.01), butyrate (P = 0.01), iso-valerate (P < 0.01), and total branched-chain volatile fatty acids, as well as the acetate: propionate ratio (P < 0.01) decreased with glycerin inclusion. Linear increases on NH₃-N concentration in digesta effluent (P < 0.01) and on NH₃-N flow (P < 0.01) were observed due to glycerin inclusion in the diets. Crude protein digestibility (P = 0.04) and microbial N flow (P = 0.04) were greater in the control treatment compared with the other treatments and responded quadratically with glycerin inclusion. Furthermore, the inclusion of glycerin linearly decreased (P = 0.02) non-ammonia N flow. Glycerin levels did not affect the flows of total N (P _Lin. = 0.79; P _Quad. = 0.35), and dietary N (P _Lin. = 0.99; P _Quad. = 0.07), as well as microbial efficiency (P _Lin. = 0.09; P _Quad. = 0.07). These results suggest that partially replacing dry ground corn with glycerin may change ruminal fermentation, by increasing total volatile fatty acids, and propionate concentration without affecting microbial efficiency, which may improve glucogenic potential of beef cattle diets.     

Growth and reproduction of eyestalk ablated penaeus canaliculatus (Olivier, 1811) (crustacea:Penaeidae)

The effects of single (unilateral) eyestalk ablation on the growth and reproduction of male and female Penaeus canaliculatus (Olivier) were compared with those of unablated (control) individuals. Prawns ≤ 10 mm in carapace length ablated in the premoult stage suffered high mortality. Prawns recognized as immature when ablated always moulted irrespective of their moulting stage; ovaries in females did not become vitellogenic nor did spermatogenesis occur in males. Mature females ablated in the premoult stage underwent moulting while those in the postmoult stage developed mature ovaries. Mature males in the postmoult or intermoult stages took longer to moult than those that were in the premoult stage when ablated. The Von Bertalannfy equations describing growth in P. canaliculatus were as follows: L_t = 25.6 [1−e^{−0.0756(t−t_o)}]for ablated males; L_t = 25.3 [1−e^{−0.059(t−t_o)}] for unablated males; L_t= 37.2 [1−e^{−0.048(t−t_o)}] forablated females; L_t = 33.4 [1−e^{−0.044(t−t_o)]} for unablated females. Differences in the growth rates were a result of both the moulting frequency and the increment in size at moult. However, the relative contribution of these two factors to growth varied with sex as well as with size. In both sexes, ablated individuals became sexually mature earlier; females spawned earlier. Although moulting frequency and the total number of spawns were greater for ablated females, the mean number of eggs produced (per spawn as well as total) by unablated females was higher and the mean hatching success was better.     

Characteristics of b-type cytochromes in brain microsomes: Comparison with liver microsomes

Biochemical aspects of b-type cytochromes in swine cerebral microsomes were different from those of cytochrome b₅ in liver microsomes, as well as the difference in absorption spectra. First, the kinetic constants, K_m and V_max, in rotenone-insensitive NADH-cytochrome c reductase activity were different from those of liver microsomes, and the activity of cerebral microsomes was higher than that of liver microsomes. Second, midpoint potentials (E_m) of b-type cytochromes in cerebral microsomes were measured and compared with liver microsomal cytochrome b₅. In cerebral microsomes two components of b-type cytochromes were resolved, and showed E_m's of ?30 and +50 mV, respectively, in the presence of 2 mm KCN. On the other hand, the E_m of liver microsomal cytochrome b₅ was ?6 mV. The high-potential component of cerebral microsomal b-type cytochromes was identified as brain-b′₅ [S. Yoshida, T. Yubisui, and M. Takeshita (1983)Biochem. Int. 7, 291–298] and the low-potential component as brain-b₅. The significance of the difference between cerebral and liver microsomal b-type cytochromes was discussed.     

Identification of 3-Sulfinopropionyl Coenzyme A (CoA) Desulfinases within the Acyl-CoA Dehydrogenase Superfamily

In a previous study, the essential role of 3-sulfinopropionyl coenzyme A (3SP-CoA) desulfinase acyl-CoA dehydrogenase (Acd) in Advenella mimigardefordensis strain DPN7^T (Acd_DPN7) during degradation of 3,3′-dithiodipropionic acid (DTDP) was elucidated. DTDP is a sulfur-containing precursor substrate for biosynthesis of polythioesters (PTEs). Acd_DPN7 showed high amino acid sequence similarity to acyl-CoA dehydrogenases but was unable to catalyze a dehydrogenation reaction. Hence, it was investigated in the present study whether 3SP-CoA desulfinase activity is an uncommon or a widespread property within the acyl-CoA dehydrogenase superfamily. Therefore, proteins of the acyl-CoA dehydrogenase superfamily from Advenella kashmirensis WT001, Bacillus cereus DSM31, Cupriavidus necator N-1, Escherichia coli BL21, Pseudomonas putida KT2440, Burkholderia xenovorans LB400, Ralstonia eutropha H16, Variovorax paradoxus B4, Variovorax paradoxus S110, and Variovorax paradoxus TBEA6 were expressed in E. coli strains. All purified acyl-CoA dehydrogenases appeared as homotetramers, as revealed by size exclusion chromatography. Acd_S110, Acd_B4, Acd_H16, and Acd_KT2440 were able to dehydrogenate isobutyryl-CoA. Acd_KT2440 additionally dehydrogenated butyryl-CoA and valeryl-CoA, whereas Acd_DSM31 dehydrogenated only butyryl-CoA and valeryl-CoA. No dehydrogenation reactions were observed with propionyl-CoA, isovaleryl-CoA, succinyl-CoA, and glutaryl-CoA for any of the investigated acyl-CoA dehydrogenases. Only Acd_TBEA6, Acd_N-1, and Acd_LB400 desulfinated 3SP-CoA and were thus identified as 3SP-CoA desulfinases within the acyl-CoA dehydrogenase family, although none of these three Acds dehydrogenated any of the tested acyl-CoA thioesters. No appropriate substrates were identified for Acd_BL21 and Acd_WT001. Spectrophotometric assays provided apparent K_m and V_max values for active substrates and indicated the applicability of phylogenetic analyses to predict the substrate range of uncharacterized acyl-CoA dehydrogenases. Furthermore, C. necator N-1 was found to utilize 3SP as the sole source of carbon and energy.     

Chloroplast Biogenesis 34: SPECTROFLUOROMETRIC CHARACTERIZATION IN SITU OF THE PROTOCHLOROPHYLL SPECIES IN ETIOLATED TISSUES OF HIGHER PLANTS

The fluorescence emission and excitation properties of protochlorophyll in etiolated cucumber (Cucumis sativus L.) cotyledons and primary bean (var. Red Kidney) leaves were characterized at 77 K. Contrary to previous studies, it appears that the short-wavelength protochlorophyll emission band consists of four fluorescent components, instead of only one nonphototransformable protochlorophyll. It was demonstrated that etiolated cucumber cotyledons synthesize and accumulate nontransformable protochlorophyll (E₄₄₀, F₆₃₀) as well as short-wavelength phototransformable protochlorophyll (E₄₃₃, F₆₃₃), (E₄₄₄, F₆₃₆), and (E₄₄₅, F₆₄₀). Long-wavelength phototransformable protochlorophyll (E₄₅₀, F₆₅₇) is also formed. In this context, E refers to the Soret excitation maxima and F refers to the red emission maxima of the protochlorophylls.     

Oxidation-reduction potentials of respiratory chain components in ThiobacillusA2

(1) Cells of ThiobacillusA₂ grown chemoautotrophically on thiosulfate or heterotrophically on succinate with oxygen contained b-, c-, o-, a- and a₃-type cytochromes. The amount of cytochrome per mg of cell protein was much greater in thiosulfate-grown cells and differences in the relative concentrations of cytochromes were observed for the different growth conditions. (2) The half-reduction potentials at pH 7.0 (E_m,7.0) and spectral maxima of c-, b-, a- and a₃-type cytochromes were similar in cells grown aerobically with thiosulfate or with succinate as the growth substrate. (3) The half-reduction potential of the ‘invisible’, or high-potential copper, as determined from the potentiometric behavior of the carbon monoxide-reduced cytochrome a₃ complex at pH 8.0, was 365 mV. (4) Reducing equivalents from thiosulfate appear to enter the respiratory chain at the cytochrome c level; however, studies in cell-free extracts were limited due to a loss in respiratory activity with thiosulfate as a substrate upon cell disruption.