Electric Communication in the Reproductive Behavior of Sternopygus macrurus (Gymnotoidei)

Sternopygus macrurus, eine der dreizehn im Rupununi Distrikt von Guyana beheimateten Messeraal-Arten benutzt elektrische Signale im Fortpflanzungsverhalten. Sternopygus leben in steinigen und sandigen Bächen und kommen nachts aus ihren Verstecken. Ihre Laichzeit beginnt vor Eintritt der Regenzeit Ende April. Sternopygus hat langdauernde Entladungen mit kurzen Pausen, die im Lautsprecher einen summenden Ton ergeben (im Unterschied zu Arten mit kurzen Entladungen und langen Pausen, die “knattern”). Von den vier summenden Fischarten hat S. macrurus eine eigene Tonlage und Tonstärke. Ausgewachsene ♂♂ und ♀♀ erzeugen verschiedene Ruhe-Entladungen. In der Laichzeit reagieren ♂♂ auf Annäherung eines ♀ mit veränderten Entladungen. Diese scheinen ♀♀ anzulocken. Auch ♀♀ können ihre Entladungen variieren. Künstlich über Elektroden ins Wasser gespielte Sinus-Schwingungen mit ♀-Frequenz wurden von ♂♂ richtig beantwortet; auf ♂-Frequenz oder Frequenzen anderer Arten gab es keine Reaktion. Beobachtungen an zwei Sternopygus-Paaren ergaben, daß die Individuen typische Entladungs-Frequenzen haben. Paarpartner können Frequenzen annehmen, die genau eine Oktave auseinander liegen.     

Morphological and molecular analysis of centropagids from the high Andean plateau (Copepoda: Calanoidea)

In small metazoan invertebrates classical taxonomic analyses can be ambiguous due to the limited number of morphological characters available. This difficulty can yield incorrect estimates of species richness or taxa distribution. The Boeckella genus has been described as the dominant taxon of zooplankton assemblages in the Andean biogeographical region. In this genus, taxonomic classification and delimitation of boundaries between species has long been problematic and controversial. Among South American centropagids Boeckella gracilipes has been regarded as one of the most broadly distributed species, its presence having been reported from Ecuador to Tierra del Fuego. However, in the high Andean plateau some centropagid populations identified as Boeckella gracilipes have also been considered as B. gracilipes titicacae or even identified as a different species, namely Boeckella titicacae. In an attempt to resolve the taxonomic status of the Centropagidae family from the high Andean plateau, we combined traditional and multivariate morphological analyses (integral approach) with the molecular phylogenetic approach. The results obtained allow us to conclude that centropagids collected from the high Andean plateau actually represent a different species, B. titicacae, not B. gracilipes. The phylogenetic reconstruction of the South American Centropagidae family indicated that B. gracilipes represents a sister taxon to B. titicacae. The present study stresses the usefulness of integrating alfa-taxonomy with morphometric and molecular approaches in order to resolve species boundaries, to determine geographical distributions and to investigate evolutionary processes.     

Phylogeny of the Rodent Genus Isothrix (Hystricognathi, Echimyidae) and its Diversification in Amazonia and the Eastern Andes

Efforts to clarify the affinities of the torós or brush-tailed rats (Isothrix) and document the radiation of these distinctive echimyids have been limited. The discovery of a new Andean species prompted a reanalysis of Isothrix and its relatives. Prior morphological analyses of skulls, mandibles, teeth, and external characters permitted robust diagnosis but offered little resolution of within- or between-group relationships. Analyses of mitochondrial cytochrome b sequences (798 bp), which are available for numerous echimyids, confirm the monophyly of recognized genera, including Isothrix, and resolve a number of interspecific relationships. Strikingly, the Andean toró (Isothrix barbarabrownae) is consistently recovered as sister to the remaining species. These are allied into three clades: I. sinnamariensis + I. pagurus in the lower Amazon Basin and Guianan Shield, I. orinoci + I. negrensis in the Rio Negro and Río Orinoco drainages, and I. bistriata across much of the western and southern Amazon Basin. However, the addition of a new basal taxon does not aid in identifying the sister taxon of Isothrix. These relationships are confirmed in combined analyses of cyt-b with sequence variation in the mitochondrial control region (D-loop; 450 bp) and in the nuclear RAG1 gene (1,072 bp). Analyses identify the Andes, or proto-Andes, as an important theater for the group’s evolution and may offer an explanation for the luxuriant fur of this genus. However, neither the biogeographic history of Isothrix nor the remarkable pelage evolution of the Echimyidae can be understood until the deeper nodes within the arboreal spiny rats (Echimyinae) are more fully resolved.     

Comments on hexanchiform phylogeny (Pisces, Neoselachii)

The Hexanchiformes (Cow Sharks) are regarded as a monophyletic taxon. Cladistic analysis shows that among the various neoselachian taxa proposed so far as the sister group of the Hexanchiformes a sister group relationship between the Hexanchiformes and a (still unnamed) taxon comprising the Squaliformes and Pristiophoriformes appears as the most probable hypothesis. In addition, MAISEY and WOLFRAM'S (1984) concept of hexanchiform interrelationships is critically reviewed. An alternative cladogram of hexanchiform interrelationships is developed which includes Recent as well as fossil hexanchiform taxa. In this cladogram the living genera Hexancbus and Notorynchus are sister groups and both taxa together form the sister group of the Recent Heptranchias. The fossil taxa +Notidanoides, +“Hexanchus” gracilis, +Notidanodon and +Weltonia are arranged in the stem lineage of recent Hexanchiformes.     

Pleistocene climatic cycling drives intra‐specific diversification in the intermediate horseshoe bat (Rhinolophus affinis) in Southern China

The repeated formation and loss of land‐bridges during the Pleistocene have had lasting impacts on population genetic structure. In the tropics, where island populations persisted through multiple glacial cycles, alternating periods of isolation and contact are expected to have driven population and taxonomic divergence. Here, we combine mitochondrial and nuclear sequence data with microsatellites to dissect the impact of Pleistocene climate change on intra‐specific diversification in the horseshoe bat Rhinolophus affinis. This taxon shows considerable morphological and acoustic variation: two parapatric subspecies (himalayanus and macrurus) occur on mainland China and a third (hainanus) on Hainan Island. Our phylogeographic reconstruction and coalescent analyses suggest the island subspecies formed from an ancestral population of himalayanus via two colonization events c. 800 000 years before present. R. a. hainanus then recolonized the mainland, forming macrurus and thus a secondary contact zone with himalayanus. Finally, macrurus recolonized Hainan following the LGM. We found that all three biological events corresponded to known periods of land‐bridge formation. Evidence of introgression was detected between macrurus and both its sister taxa, with geographical proximity rather than length of separation appearing to be the biggest determinant of subsequent genetic exchange. Our study highlights the important role of climate‐mediated sea level changes have had in shaping current processes and patterns of population structure and taxonomic diversification.     

Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles

Background  

Section Calochroi is one of the most species-rich lineages in the genus Cortinarius (Agaricales, Basidiomycota) and is widely distributed across boreo-nemoral areas, with some extensions into meridional zones. Previous phylogenetic studies of Calochroi (incl. section Fulvi) have been geographically restricted; therefore, phylogenetic and biogeographic relationships within this lineage at a global scale have been largely unknown. In this study, we obtained DNA sequences from a nearly complete taxon sampling of known species from Europe, Central America and North America. We inferred intra- and interspecific phylogenetic relationships as well as major morphological evolutionary trends within section Calochroi based on 576 ITS sequences, 230 ITS + 5.8S + D1/D2 sequences, and a combined dataset of ITS + 5.8S + D1/D2 and RPB1 sequences of a representative subsampling of 58 species.     

Phylogeny of Selected Maxillopodan and Other Crustacean Taxa Based on 18S Ribosomal Nucleotide Sequences: A Preliminary Analysis

Relationships among the following taxa were examined based on 18S ribosomal RNA and DNA nucleotide sequences: Branchiopoda (Branchinecta packardi), Ostracoda (two podocopid species), Branchiura (Argulus nobilis), Pentastomida (Porocephalus crotali), Copepoda (Calanus pacificus, Macrocyclops albidus), Thoracica (Balanus eburneus, Calantica villosca), Acrothoracica (Trypetesa lampas), and Decapoda (Procambarus leonensis, Callinectes sapidus). Phylogenetic relationships were inferred by maximum parsimony and results evaluated by bootstrapping. With Branchinecta packardi as an outgroup, the following tree was inferred: the first branch leads to a node that joins a pentastome, a branchiuran and the two ostracodes; the second branch leads to a node that has the two copepods as a sister taxon to a clade that includes the acrothoracican and thoracicans; the last branch leads to a node joining the two decapods. The analyses suggest: (1) acrothoracicans diverged very early from the cirripede line and are not derived from a lepadomorph-like ancestor; (2) branchiurans are not related to either copepods or thecostracans but are closely allied with pentastomes; and (3) the Maxillopoda, broadly defined, is not a monophyletic taxon. These results differ from previous studies of these groups.     

A new genus and species of rodent from the Brazilian Atlantic Forest (Rodentia: Cricetidae: Sigmodontinae: Oryzomyini), with comments on oryzomyine biogeography

We describe in this paper a new genus and species of cricetid rodent from the Atlantic Forest of Brazil, one of the most endangered eco‐regions of the world. The new form displays some but not all synapomorphies of the tribe Oryzomyini, but a suite of unique characteristics is also observed. This new forest rat possesses anatomical characteristics of arboreal taxa, such as very developed plantar pads, but was collected almost exclusively in pitfall traps. Phylogenetic analyses of morphological (integument, soft tissue, cranial, and dental characters) and molecular [nuclear – Interphotoreceptor retinoid binding protein (Irbp) – and mitochondrial – cytochrome b– genes] datasets using maximum likelihood and cladistic parsimony approaches corroborate the inclusion of the new taxon within oryzomyines. The analyses also place the new form as sister species to Eremoryzomys polius, an Andean rat endemic to the Maranon valley. This biogeographical pattern is unusual amongst small terrestrial vertebrates, as a review of the literature points to few other similar examples of Andean–Atlantic Forest pairings, in hylid frogs, Pionus parrots, and other sigmodontine rodents. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 161 , 357–390.     

Phylogeny and reclassification of species groups in Aquarius Schellenberg, Limnoporus Stål and Gerris Fabricius (Insecta: Hemiptera-Heteroptera, Gerridae)

Abstract. We investigated phylogenetic relationships of water striders (Hemiptera‐Heteroptera: Gerridae) from the three principal Holarctic genera, Aquarius Schellenberg, Limnoporus Stål and Gerris Fabricius with parsimony analyses of sixty‐six morphological characters and DNA sequences from mitochondrial (cytochrome c oxidase subunit I + II; large mitochondrial ribosomal subunit) and nuclear (elongation factor 1‐alpha) genes. The taxon sampling included all species of Aquarius and Limnoporus, and a dense, near complete, sample of Gerris species with representatives from all subgenera and species groups, and Gigantometra gigas (China) was selected as an outgroup species. A simultaneous analysis of all data sets gave eight equally parsimonious trees, and a strict consensus tree left only a few relationships within Gerris unresolved. While Limnoporus and Gerris each were resolved as monophyletic entities, Aquarius was found to be polyphyletic, because the Nearctic Aquarius remigis‐group, comprising A. remigis (Say), A. amplus (Drake and Harris), A. nyctalis (Drake and Hottes) and A. remigoides Gallant and Fairbairn, was placed as sister group to Gerris, while the Andean Aquarius chilensis (Berg) was sister group to all three genera. Remaining species of Aquarius comprised a sister group to the Gerris + the A. remigis‐group clade. Based on our phylogenetic reconstruction we discuss relationships within and among the three genera, reassess and diagnose species groups, and discuss zoogeographical relationships among all taxa.     

CLADISTIC TESTS OF HYPOTHESES CONCERNING EVOLUTION OF XEROPHYTES AND MESOPHYTES WITHIN TILLANDSIA SUBG. PHYTARRHIZA (BROMELIACEAE)

Tillandsia L. Subg. Phytarrhiza (Visiani) Baker (Bromeliaceae) is a distinctive group of about 35 epiphytic species. These exhibit a range of habits from xeric to mesic. The evolutionary relationships of the contrasting adaptations need to be established here as well as in the subfamily as a whole. Relations between the subgenus and other tillandsioids are problematical and phylogenetic reconstruction of its member-species would be facilitated by identification of Phytarrhiza's relative (sister taxon) sharing the same most recent common ancestor with Phytarrhiza. This paper examines the two most likely sister taxa, Subg. Pseudo-Catopsis Baker and Subg. Diaphoranthema (Beer) Baker. Diaphoranthema is rejected as sister taxon. The accepted evolutionary tree, rooted by Pseudo-Catopsis, indicates that most habital evolutionary changes in Phytarrhiza have been between mesic and semi-mesic forms and from mesic to xeric forms. Methods developed for testing specific evolutionary hypotheses are broadly applicable.     

A reassessment of Eocene parrotlike fossils indicates a previously undetected radiation of zygodactyl stem group representatives of passerines (Passeriformes)

In the past years, various Eocene fossil birds were described as stem group representatives of the zygodactyl Psittaciformes (parrots). These birds show quite disparate morphologies, which cast some doubt on the correct assignment of all of them to the psittaciform stem group. A reassessment of their affinities is further needed, because it was recently proposed that among extant birds, Psittaciformes and Passeriformes (passerines) form a clade and that passerines possibly derived from a zygodactyl ancestor. Here, phylogenetic analyses are performed, which for the first time also include representatives of the Zygodactylidae, the extinct zygodactyl sister taxon of the Passeriformes. The early Eocene Psittacopes was originally described as a stem group representative of Psittaciformes. However, none of the present analyses supported psittaciform affinities for Psittacopes and instead recovered this taxon in a clade together with zygodactylids and passerines. Also part of this clade are the early Eocene taxa Pumiliornis and Morsoravis, and it is detailed that Psittacopes and the long‐beaked and presumably nectarivorous Pumiliornis, with which it has not yet been compared, are very similar in their postcranial osteology. The present analysis corroborates the hypothesis of a zygodactyl stem species of passerines. To account for these results, Psittacopes is here assigned to a new higher‐level taxon and a new name is also introduced for the clade including Zygodactylidae and Passeriformes.     

Relationships among the major lineages of Dictyoptera: the effect of outgroup selection on dictyopteran tree topology

Abstract Dictyoptera, comprising Blattaria, Isoptera, and Mantodea, are diverse in appearance and life history, and are strongly supported as monophyletic. We downloaded COII, 16S, 18S, and 28S sequences of 39 dictyopteran species from GenBank. Ribosomal RNA sequences were aligned manually with reference to secondary structure. We included morphological data (maximum of 175 characters) for 12 of these taxa and for an additional 15 dictyopteran taxa (for which we had only morphological data). We had two datasets, a 59‐taxon dataset with five outgroup taxa, from Phasmatodea (2 taxa), Mantophasmatodea (1 taxon), Embioptera (1 taxon), and Grylloblattodea (1 taxon), and a 62‐taxon dataset with three additional outgroup taxa from Plecoptera (1 taxon), Dermaptera (1 taxon) and Orthoptera (1 taxon). We analysed the combined molecular?morphological dataset using the doublet and MK models in Mr Bayes , and using a parsimony heuristic search in paup . Within the monophyletic Mantodea, Mantoida is recovered as sister to the rest of Mantodea, followed by Chaeteessa; the monophyly of most of the more derived families as defined currently is not supported. We recovered novel phylogenetic hypotheses about the taxa within Blattodea (following Hennig, containing Isoptera). Unique to our study, one Bayesian analysis places Polyphagoidea as sister to all other Dictyoptera; other analyses and/or the addition of certain orthopteran sequences, however, place Polyphagoidea more deeply within Dictyoptera. Isoptera falls within the cockroaches, sister to the genus Cryptocercus. Separate parsimony analyses of independent gene fragments suggest that gene selection is an important factor in tree reconstruction. When we varied the ingroup taxa and/or outgroup taxa, the internal dictyopteran relationships differed in the position of several taxa of interest, including Cryptocercus, Polyphaga, Periplaneta and Supella. This provides further evidence that the choice of both outgroup and ingroup taxa greatly affects tree topology.     

The osteology of the golden grey mullet Liza aurata (Teleostei: Mugiliformes: Mugilidae) including interactive three-dimensional reconstructions

Grey mullets are remarkably characterized by their overall uniform external morphology. Identifying species as well as positioning the Mugiliformes in a phylogenetic context is rather difficult. Most recently they were placed in the newly erected Ovalentaria, but more detailed relationships to potential sister taxa were not resolved. Studying the internal morphology, especially the osteology, might provide new insights into the evolution of the Mugiliformes as well as help clarify their phylogenetic position within the Ovalentaria. A detailed osteology of the golden grey mullet Liza aurata is presented. The use of cleared and stained specimens allowed for a complete examination of bony and cartilaginous structures, and a 3D reconstruction from a μCT data set provided additional information on the positional relationships of the bones. Following this, the data obtained were compared with different mugilid species, particularly with the flathead grey mullet Mugil cephalus. Several differences between these species could be identified, such as the position of the basisphenoid, the shape of the hyomandibular and the composition of the branchial arches. These characters might help in understanding the evolutionary changes happening within the mugiliforms and will provide the basis to study this taxon in detail, finally allowing the reconstruction of the body plan of grey mullets.     

Systematics of hypsilophodontidae and basal Iguanodontia (dinosauria: Ornithopoda)

The phylogenetic relationships of species attributed to the ornithopod family Hypsilophodontidae are evaluated using morphological characters from the skull, dentition, and postcranium. Based on our analyses, Hypsilophodontidae constitutes a monophyletic taxon that comprises the sister taxon to Iguanodontia, together forming Euornithopoda. Three clades within the family are consistently demonstrated: Zephyrosaurus schaff+Orodromeus makelai, Parksosaurus warreni+Hypsilophodon foxii and Yandusaurus hongheensis+Othnielia rex. Thescelosaurus neglectus is the sister taxon to these six genera and constitutes the basal hypsilophodontid. Tenontosaurus tilletti is the basal member of Iguanodontia, with species of Dryosaurus and Camptosaurus as higher taxa within the clade. To understand the effects missing data may have on tree topology, tree length, and consistency indices, poorly represented characters were secondarily removed from the character matrix. In these analyses, all relationships remain stable, but tree length and consistency index decrease with increasingly more complete culled data sets. An average of 42.5 million years is accumulated as minimal divergence time for the hypsilophodontid and basal iguanodontian relationships described here. These figures underscore the large amount of hypsilophodontid evolution yet unaccounted for in the fossil record.     

A phylogenetic hypothesis for Asilidae based on a total evidence analysis of morphological and DNA sequence data (Insecta: Diptera: Brachycera: Asiloidea)

An hypothesis of phylogenetic relationships of Asilidae and its constituent taxa is presented, combining morphological and DNA sequence data in a total evidence framework. It is based on 77 robber fly species, 11 Asiloidea outgroup species, 211 morphological characters of the adult fly, and approximately 7300 bp of nuclear DNA from five genes (18S and 28S rDNA, AATS, CAD, and EF-1α protein-encoding DNA). The equally weighted, simultaneous parsimony analysis under dynamic homology in POY resulted in a single most parsimonious cladogram with a cost of 27,582 (iterative pass optimization; 27,703 under regular direct optimization). Six of the 12 included subfamily taxa are recovered as monophyletic. Trigonomiminae, previously always considered as monophyletic based on morphology, is shown to be non-monophyletic. Two of the three Trigonomiminae genera, Holcocephala Jaennicke, 1867 and Rhipidocephala Hermann, 1926, group unexpectedly as the sister taxon to all other Asilidae. Laphriinae, previously seen in the latter position, is the sister group of the remaining Asilidae. Five other subfamily taxa, i.e. Brachyrhopalinae, Dasypogoninae, Stenopogoninae, Tillobromatinae, and Willistonininae, are also shown to be non-monophyletic. The phylogenetic relationships among the higher-level taxa are partly at odds with findings of a recently published morphological study based on more extensive taxon sampling. The total evidence hypothesis is considered as the most informative one, but the respective topologies from the total-evidence, morphology-only, and molecular-only analyses are compared and contrasted in order to discuss the signals from morphological versus molecular data, and to analyze whether the molecular data outcompete the fewer morphological characters. A clade Apioceridae+Mydidae is corroborated as the sister taxon to Asilidae.     

Contributions to molecular systematics of water scavenger beetles (Hydrophilidae,Coleoptera)

Phylogenetic relationships within Hydrophilidae were examined by analyses of separate and combined nuclear and mitochondrial markers (28S rRNA, 18S rRNA, 16S rRNA, 12S rRNA, COI and COII genes). The preferred (Bayesian) tree topology suggests a sister group relationship between Spercheidae and Hydrophilidae, supporting the ‘hydrophilid lineage’; Epimetopidae are placed on the base of the ‘helophorid branch’, the monophyly of Sphaeridiinae is highly supported, nested deeply within Hydrophilidae closest to Enochrus, making Hydrophilinae and Acidocerini paraphyletic; Hydrobius appears as sister taxon to (Hydrochara + Hydrophilus) without a closer relationship to Acidocerini; the hydrophiloid–histeroid sister group relationship is confirmed. The topology of several taxa remains contradictory, and requires further investigations with a larger taxon sampling and additional molecular markers.     

Immunohistochemical identification of substance P in cutaneous sensory organs (electroreceptors) of gymnotid teleost fish

Summary The distribution of the neuropeptide substance P, which is considered to be a neurotransmitter or neuromodulator of the central nervous system, has been studied in the cutaneous electroreceptor organs (tuberous and ampullary organs) of 3 species of gymnotid fish: Apteronotus leptorhynchus, Eigenmannia virescens and Sternopygus sp. Immunohistochemical data have revealed that substance P is never present in the afferent fibers but is specifically localized in the electroreceptors of the three species examined. Substane P immunoreactivity is strictly localized in the sensory cells of the ampullary organs of all three species and in those of the tuberous organs of Apteronotus leptorhynchus and Sternopygus sp. In contrast, weak substance P immunoreactivity was observed only in certain tuberous sensory cells of Eigenmannia. Substance P immunoreactivity was also found in the accessory cells of certain organs: it was detected in the two types of accessory cells of the tuberous organs of Eigemmannia virescens, in the accessory cells type 2 of the tuberous organs of Sternopygus sp., and in all accessory cells of ampullary organs of Sternopygus sp. and Apteronotus leptorhynchus. In Sternopygus sp., positive staining was only evident if the substance P antibody was used at low concentration. Immunoreactivity for substance P in the sensory cells suggests that it has a transmitter or modulator function in these electroreceptors; the presence of substance P in the accessory cells remains to be explained.     

THE ORIGIN AND EVOLUTIONARY RELATIONSHIPS OF ‘HUAUZONTLE’ (CHENOPODIUM NUTTALLIAE SAFFORD), DOMESTICATED CHENOPOD OF MEXICO

A New World assemblage of tetraploid Chenopodium species (section Chenopodium, subsection Cellulata) includes two domesticates, C. quinoa of Andean South America and C. nuttalliae of Mexico. Both have been combined into a single species and the Mexican form has been considered as a possible derivative of C. quinoa. The domesticates and related, sympatric weed forms, C. berlandieri of North America and C. hircinum of the Andes, were examined for variation in morphological and biochemical characteristics and also were included in a program of artificial hybridization. Results indicate that the domesticated forms are more closely related to their sympatric weeds than to each other. The Mexican cultigen is placed as a subspecies of C. berlandieri, the taxon from which it most likely evolved under human selection in North America. Possible origins for the Andean weed-crop complex are considered. Southward migration of a North American tetraploid appears to be more likely than independent allotetraploidy in South America. Of the North American tetraploids examined, C. berlandieri var. zschackei of the western U.S. shows closest affinities to the Andean complex.     

Neurocranial osteology and systematic relationships of Varanus (Megalania) prisca Owen, 1859 (Squamata: Varanidae)

The neurocranial osteology of the giant monitor lizard Varanus (Megalania) prisca Owen, 1859 is described in detail for the first time. Optimization of neurocranial characters onto phylogenetic topologies for varanoids, including Lanthanotus, Heloderma, and Varanus species nests V. prisca within an Indo‐Australian clade of Varanus on the basis of characters of the otic capsule. A sister‐taxon relationship between V. prisca and Varanus komodoensis Ouwens, 1912 is proposed based on apomorphies of the crista prootica, fenestra vestibuli, occipital recess, and supraoccipital. These results support a monophyletic clade of giant monitors among Indo‐Australian species, and unambiguously synonymize Megalania with Varanus at both generic and subgeneric levels. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 445–457.