Conservation genetics of Blanding’s turtle and its application in the identification of evolutionarily significant units

Blanding’s turtle is a North American freshwater turtle whose main range occurs south of the Great Lakes; disjunct populations occur east of the Appalachian Mountains from New York to Nova Scotia. The species is listed as threatened or endangered in most of its range. We employed five variable microsatellites to examine samples of 300 individuals in 12 populations. Estimates of F _ST based on pairwise comparisons of populations ranged from 0.000 to 0.465. Phylogenetic analysis of these F _ST values reveals that the Appalachian Mountains and the Hudson River appear to present major barriers to gene flow in Blanding’s turtle. The extent of fine-scale genetic structure previously reported in the Nova Scotian populations was not found in other parts of the species’ range. We recommend that populations separated by the Appalachian Mountains as well as the highly disjunct Nova Scotian populations of Blanding’s turtle be recognized as evolutionarily significant units.     

Molecular genetics of peripheral populations of Nova Scotian Unionidae (Mollusca: Bivalvia)

Peripheral populations of eight species of freshwater bivalves (Unionidae.) extending their geographic ranges into Nova Scotia, Canada, were examined electrophoretically to determine both the extent of genetic variability within such populations, and whether the hypothesized pathway of colonization across the Isthmus of Chignecto is reflected in patterns of genetic resemblance among these populations. The Nova Scotian species examined could be separated into two groups based on levels of observed heterozygosity and levels of variability in allele frequencies. The first group is characterized by low levels of heterozygosity and polymorphism compared with north-eastern American populations, and in the case of one species, Elliptio complanala, considerable variability in allele frequencies among populations occurring in similar habitats in different drainages. Populations of E. complanata from Nova Scotia can be differentiated from conspecific populations on the southern Atlantic Slope by possession of fast alleles at two loci. Multivariate analyses define subgroups within populations of E. complanata consistent with hypothesis that the species invaded Nova Scotia by way of the Isthmus of Chignecto, and then split into two groups, one of which colonized Cape Breton to the north and the other of which colonized southern areas of the Province. The second group of Nova Scotian species is characterized by little reduction in heterozygosity and polymorphism compared with values observed among north-eastern American conspecifics or congeners, little variability in allele frequencies from population to population, and little evidence to suggest that these species were dependent on the land bridge to invade the Province. The type of dispersal is hypothesized to be responsible, in part, for these differences: larvae of species in the first group rely on a parasitic attachment to fish with territorial habits limited to fresh water, and are thus likely to invade new drainages separated by salt water by chance, in small numbers, and in stepping-stone fashion. Species in the second group parasitize anadromous or saltwater tolerant hosts, are likely to be introduced into new habitats in greater numbers and/or receive greater amounts of gene flow subsequent to colonization, and seem less dependent on land-bridges to colonize new habitats.     

Inheritance of mucilage canals in Laminaria (section Simplices) in eastern Canada

Two experiments have been carried out to test the suitability of the occurrence of mucilage canals as a criterion for species or ecotype definition in the non-digitate section of the genus Laminaria. A matrix of crossability tests shows complete interfertility between all mucilage canal types, fertile F₁ hybrids being produced in all cases. Quantitative genetic analysis reveals a large environmental component in the phenotypic variance of degree of mucilage canal development. Only plants from Nova Scotia bred true with respect to mucilage canals. This characteristic is therefore considered generally unsuitable for taxonomic and biological species determination, though there may be evidence for intraspecific genotypic differentiation of Nova Scotian populations.     

Disentangling invasion processes in a dynamic shipping-boating network

The relative importance of multiple vectors to the initial establishment, spread and population dynamics of invasive species remains poorly understood. This study used molecular methods to clarify the roles of commercial shipping and recreational boating in the invasion by the cosmopolitan tunicate, Botryllus schlosseri. We evaluated (i) single vs. multiple introduction scenarios, (ii) the relative importance of shipping and boating to primary introductions, (iii) the interaction between these vectors for spread (i.e. the presence of a shipping-boating network) and (iv) the role of boating in determining population similarity. Tunicates were sampled from 26 populations along the Nova Scotia, Canada, coast that were exposed to either shipping (i.e. ports) or boating (i.e. marinas) activities. A total of 874 individuals (c. 30 per population) from five ports and 21 marinas was collected and analysed using both mitochondrial cytochrome c oxidase subunit I gene (COI) and 10 nuclear microsatellite markers. The geographical location of multiple hotspot populations indicates that multiple invasions have occurred in Nova Scotia. A loss of genetic diversity from port to marina populations suggests a stronger influence of ships than recreational boats on primary coastal introductions. Population genetic similarity analysis reveals a dependence of marina populations on those that had been previously established in ports. Empirical data on marina connectivity because of boating better explains patterns in population similarities than does natural spread. We conclude that frequent primary introductions arise by ships and that secondary spread occurs gradually thereafter around individual ports, facilitated by recreational boating.     

Phylogeography,population genetics and distribution modelling reveal vulnerability of Scirpus longii (Cyperaceae) and the Atlantic Coastal Plain Flora to climate change

A proactive approach to conservation must be predictive, anticipating how habitats will change and which species are likely to decline or prosper. We use composite species distribution modelling to identify suitable habitats for 18 members of the North American Atlantic Coastal Plain Flora (ACPF) since the Last Glacial Maximum and project these into the future. We then use Scirpus longii (Cyperaceae), a globally imperiled ACPF sedge with many of the characteristics of extinction vulnerability, as a case study. We integrate phylogeographical and population genetic analyses and species distribution modelling to develop a broad view of its current condition and prognosis for conservation. We use genotyping‐by‐sequencing to characterize the genomes of 142 S. longii individuals from 20 populations distributed throughout its range (New Jersey to Nova Scotia). We measure the distribution of genetic diversity in the species and reconstruct its phylogeographical history using the snapp and rase models. Extant populations of S. longii originated from a single refugium south of the Laurentide ice sheet around 25 ka. The genetic diversity of S. longii is exceedingly low, populations exhibit little genetic structure and the species is slightly inbred. Projected climate scenarios indicate that nearly half of extant populations of S. longii will be exposed to unsuitable climate by 2070. Similar changes in suitable habitat will occur for many other northern ACPF species—centres of diversity will shift northward and Nova Scotia may become the last refuges for those species not extinguished.     

Dynamic spleen mass in wild and domestic American mink

The immune system is considered to be an energetically expensive component of an individual's life history. Investment in the immune system can depend on the environment that an individual finds itself in. The American mink, Neovison vison, exists in the natural environment and on fur farms. The natural environment and mink farm differ in many ways, such as wild mink being exposed to many parasites that are less prevalent and less abundant in the domestic environment because of veterinary care. We collected free‐ranging mink from commercial trappers and domestic mink from fur farmers in Ontario and Nova Scotia, Canada, and examined relative spleen mass. Wild male mink had larger spleens than domestic mink in Nova Scotia, with a similar trend in Ontario. Female mink that escaped from farms (feral) in Nova Scotia had significantly larger spleens than their domestic counterparts on the farms. Both of these results are consistent with the prediction that the natural environment contains parasites and pathogens that require enhanced investment in the immune system. In Nova Scotia, females had larger spleens than males, whether considering wild or domestic populations. Finally, wild mink showed greater condition dependence of spleen mass than domestic populations. Further investigations should include experimental approaches such as providing veterinary care to wild populations to assess the effects of parasites and pathogens on the immune system. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 107 , 624–631.     

A microsatellite-based estimation of clonal diversity and population subdivision in Zostera marina, a marine flowering plant

We examined the genetic population structure in eelgrass (Zostera marina L.), the dominant seagrass species of the northern hemisphere, over spatial scales from 12 km to 10 000 km using the polymorphism of DNA microsatellites. Twelve populations were genotyped for six loci representing a total of 67 alleles. Populations sampled included the North Sea (four), the Baltic Sea (three), the western Atlantic (two), the eastern Atlantic (one), the Mediterranean Sea (one) and the eastern Pacific (one). Microsatellites revealed substantial genetic variation in a plant group with low allozyme diversity. Average expected heterozygosities per population (monoclonal populations excluded) ranged from 0.32 to 0.61 (mean = 0. 48) and allele numbers varied between 3.3 and 6.7 (mean = 4.7). Using the expected frequency of multilocus genotypes within populations, we distinguished ramets from genetic individuals (i.e. equivalent to clones). Differences in clonal diversity among populations varied widely and ranged from maximal diversity (i.e. all ramets with different genotype) to near or total monoclonality (two populations). All multiple sampled ramets were excluded from further analysis of genetic differentiation within and between populations. All but one population were in Hardy-Weinberg equilibrium, indicating that Zostera marina is predominantly outcrossing. From a regression of the pairwise population differentiation with distance, we obtained an effective population size Ne of 2440-5000. The overall genetic differentiation among eelgrass populations, assessed as rho (a standardized estimate of Slatkin's RST) was 0.384 (95% CI 0.34-0.44, P < 0.001). Genetic differentiation was weak among three North Sea populations situated 12-42 km distant from one another, suggesting that tidal currents result in an efficient exchange of propagules. In the Baltic and in Nova Scotia, a small but statistically significant fraction of the genetic variance was distributed between populations (rho = 0.029-0. 053) at scales of 15-35 km. Pairwise genetic differentiation between European populations were correlated with distance between populations up to a distance of 4500 km (linear differentiation-by-distance model, R2 = 0.67). In contrast, both Nova Scotian populations were genetically much closer to North Sea and Baltic populations than expected from their geographical distance (pairwise rho = 0.03-0.08, P < 0.01). A biogeographical cluster of Canadian with Baltic/North Sea populations was also supported using a neighbour-joining tree based on Cavalli-Sforza's chord distance. Relatedness between populations may be very different from predictions based on geographical vicinity.     

Parasitism and predation as agents of mortality of winter moth populations in neglected apple orchards in Nova Scotia

Abstract.

• 1 This study compared the roles of pupal mortality and parasitism in winter moth (Operophtera brumata) population dynamics in Nova Scotian apple orchards and assessed the importance of beetles as pupal predators.
• 2 The component of pupal mortality termed predation accounted for greater stage-specific mortality of winter moth than parasitism by Cyzenis albicans in four neglected orchards.
• 3 Parasitism by Cyzenis albicans was not spatially density-dependent in any orchard, whereas the predation component of pupal mortality was spatially density-dependent in the two orchards most densely populated by winter moth.
• 4 Field experiments indicated that over 60% of pupal predation may be attributed to beetles, and that about 46% of pupal predation occurred within 4 weeks after pupal drop.
• 5 Mortality of introduced populations of winter moth in Nova Scotia resembles that of native populations in England where density-dependent predation regulates the winter moth population and reduces the parasitoid population to minimal levels. The situation in Nova Scotia appears to have changed appreciably since the establishment of parasitoids into the system in the 1950s.

     

Estimating Population Growth and Recruitment Rates Across the Range of American Common Eiders

Sound management of bird populations rests upon an adequate understanding of their population dynamics. Our study evaluated recruitment and population growth rates of 14 American common eider (Somateria mollissima dresseri) colonies from Labrador, Nova Scotia, Quebec, Canada, and Maine, USA, during various periods between 1970 and 2019. We used Pradel mark-recapture models to estimate colony-specific growth rates and the relative contributions of survival and recruitment on growth. We also validated this approach using annual nest counts (~8,000 pairs) conducted between 2003 and 2019 during down harvest operations in 3 colonies located in the Saint Lawrence estuary in Quebec. There was generally a good agreement between estimates derived using the 2 approaches. We considered that capture-recapture data were suitable to estimate population trends of common eiders in other colonies, especially for colonies where accurate nest monitoring is impaired by dense vegetation. The breeding abundance declined at major colonies in Maine and Nova Scotia and increased or was stable in Quebec and Labrador. Female survival contributed the most to population growth, but variation in recruitment among colonies was more important than variation in survival to explain population growth. Management measures should thus strive to maximize local recruitment in colonies with declining populations. The assumption that apparent survival probabilities were homogeneous throughout an individual capture history was violated at several colonies in Quebec and Labrador. Using recaptures and band recoveries, we showed that the lower apparent survival for newly marked individuals compared to females that had been recaptured at least once was caused by a difference in site fidelity rather than true survival. But <1% of recaptured females dispersed to another colony for breeding, indicating that the lower site fidelity could be related to heterogeneity in capture probability among individuals. © 2021 The Wildlife Society.     

Nuclear and mitochondrial markers reveal distinctiveness of a small population of bottlenose whales (Hyperoodon ampullatus) in the western North Atlantic

Small populations at the edge of a species' distribution can represent evolutionary relics left behind after range contractions due to climate change or human exploitation. The distinctiveness and genetic diversity of a small population of bottlenose whales in the Gully, a submarine canyon off Nova Scotia, was quantified by comparison to other North Atlantic populations using 10 microsatellites and mitrochondrial DNA (mtDNA) control region sequences (434 bp). Both markers confirmed the distinctiveness of the Gully (n = 34) from the next nearest population, off Labrador (n = 127; microsatellites -F(ST)= 0.0243, P < 0.0001; mtDNA -Phi(ST) = 0.0456, P < 0.05). Maximum likelihood microsatellite estimates suggest that less than two individuals per generation move between these areas, refuting the hypothesis of population links through seasonal migration. Both males and females appear to be philopatric, based on significant differentiation at both genomes and similar levels of structuring among the sexes for microsatellites. mtDNA diversity was very low in all populations (h = 0.51, pi = 0.14%), a pattern which may be due to selective sweeps associated with this species' extreme deep-diving ecology. Whaling had a substantial impact on bottlenose whale abundance, with over 65 000 animals killed before the hunt ceased in the early 1970s. Genetic diversity was similar among all populations, however, and no signal for bottlenecks was detected, suggesting that the Gully is not a relic of a historically wider distribution. Instead, this unique ecosystem appears to have long provided a stable year-round habitat for a distinct population of bottlenose whales.     

Trends in abundance of rocky intertidal seaweeds and filter feeders across gradients of elevation,wave exposure,and ice scour in eastern Canada

On NW Atlantic rocky shores, the main basal organisms in intertidal communities are seaweeds (Ascophyllum nodosum, Fucus spp. and Chondrus crispus) and filter feeders (barnacles, Semibalanus balanoides, and mussels, Mytilus spp.). Their ecology has been extensively studied in New England (United States), but knowledge gaps exist for northern shores, which are subjected to stronger environmental stress. Therefore, we studied the above organisms on Canadian shores. We quantified the summer abundance of these seaweeds and filter feeders across full vertical (intertidal elevation) and horizontal (wave exposure and winter ice scour) environmental gradients on the Gulf of St. Lawrence and open Atlantic coasts of Nova Scotia. At the regional scale along the open Atlantic coast, seaweeds showed similar abundances in Nova Scotia than values reported for New England. However, both filter feeders were considerably less abundant in Nova Scotia. At the local scale in Nova Scotia, intense winter ice scour (which only occurs on the Gulf of St. Lawrence coast) was associated with a very low abundance of all species except barnacles. Spatial trends in Nova Scotia were similar to patterns known for certain species elsewhere, such as A. nodosum being almost restricted to sheltered habitats, regardless of elevation, and C. crispus being almost restricted to low elevations, regardless of exposure. Other trends were, however, characteristic of Nova Scotia, such as C. crispus being frequent at low elevations in exposed habitats, unlike in New England, where mussels often predominate there because of competitive advantages. In Nova Scotia, mussels were always restricted to cracks and crevices, unlike in New England, where they form extensive intertidal beds on exposed shores. The direct effects of increased environmental stress and indirect effects through altered interspecific interactions might explain the regional differences in local species distribution, which will require experimental validation. Handling editor: K. Martens     

The demography of trout lily (Erythronium americanum Ker.) in Nova Scotia

The age structures of both native and transplanted populations of the perennial herb, trout lily (Erythronium americanum), were analysed and found to have age-independent mortality rates. Cohort survival was greatest in populations growing on hardwood forested flood plains (60%), less in populations from gently sloping terraces with pit-and-mound microrelief (53%) and smallest (45%) for colonies on slopes steeper than 15°. The former habitat-type is the optimum for trout lily in Nova Scotia and in it the proportion of flowering bulbs can reach 35%. The second named habitat is widespread and characterised by fewer flowering bulbs (5–10%). In the latter habitat flowering bulbs are uniformly rare. Trout lily bulbs tend to be sterile until at least their eighth year. The high mortality rates of populations on steeply sloping, hardwood forested ground ensure minimal survival of bulbs beyond their sixth year. In the other two named habitats sufficient numbers of bulbs reach ages of 8 or 9 years for some to make the translation from the sterile to the flowering form. In all the habitats studied in Nova Scotia, propagation is typically by either runners or, less importantly, daughter bulbs, with the peak of activity in the bulbs third and fourth years. The plants of flood plains showed the greatest rates of vegetative propagation, by cohort, but many of the bulbs from colonies growing on steep slopes lacked runners or daughter bulbs. As all bulbs for the transplant experiments came from a single clone it can be concluded that trout lily plants in Nova Scotia have a sufficiently large genetic endowment for them to behave in the same manner as native populations of the species in the several habitats represented in the province.The figures were drafted in the cartography section of the University of Canterbury. The National Research Council of Canada supported the research with a series of grants.     

Finite state grammars for dialects of the advertising song of the savannah sparrow (PasserculusSandwichensis)

Right-linear finite state grammars were extracted for song sequences of Savannah Sparrows (Passerculus sandwichensis) from Ontario and Nova Scotia. The Nova Scotia grammar was found to be longer than the Ontario grammar (possess more rewrite statements) and allow for the production of sequences containing consecutive trills. These differences are discussed with respect to genetic and environmental factors shaping song behaviour in the two regions. Limitations of a nonstochastic finite state grammar procedure are also addressed.     

Changes in scale circulus spacings of an endangered Atlantic salmon Salmo salar population: evidence of a shift in marine migration?

Post‐smolt scale circulus spacing patterns for two Atlantic salmon Salmo salar populations from the Southern Upland (SU) of Nova Scotia, Canada, were compared with spacings from two endangered populations from the inner Bay of Fundy (iBoF) Nova Scotia and New Brunswick, to determine if growth patterns differed among these populations, and if growth patterns had changed as the abundance of these populations declined. An analysis of numbers of marine circuli from scales of post‐smolts and one‐sea‐winter adults of known age indicated that circuli were deposited at a rate of about one circulus per week in summer and slowed to one every 2 weeks in winter. During the summer and the autumn, mean circulus spacing in the iBoF populations, known to have occupied the outer Bay of Fundy during these seasons, was lower than in the SU populations, which are known to migrate to the North Atlantic. Similar circulus spacing patterns within SU populations is suggestive of a common marine distribution for these populations. In contrast, a cluster analysis revealed that within the geographically intermediate Big Salmon River (iBoF), some individuals exhibited wider spacing patterns that resemble the distant migrating SU populations, while others exhibited narrower spacing similar to other iBoF S. salar. Within the Big Salmon River, the relative abundance of the wider and the narrower spacing patterns varied in the earlier years, but all fish sampled since 1999, exhibited wider spacings similar to distant migrating SU S. salar. The apparent disappearance of the narrower pattern, characteristic of localized migration and indicative of historical iBoF populations, suggests that local migration may not presently be a successful strategy for these populations.     

Genetic and demographic aspects of Nova Scotia Niemann-Pick disease (type D).

All known cases of Nova Scotia Niemann-Pick Disease (type D) were traced to a couple born in Nova Scotia in the late 1600s. It is speculated that this disease is the result of a single mutation in one of the ancestors of Yarmouth County French Acadians. In the district where most affected children lived, the heterozygote frequency was estimated to be between 10% and 26%.     

Understanding Fluctuations in Bobcat Harvest at the Northern Limit of Their Range

ABSTRACT In Quebec, Canada, harvest of bobcats (Lynx rufus) started to decline in 1985 and by 1991, harvest seasons were closed due to concerns of a perceived population decline. Since the closing of harvest season in 1991, the average temperature has increased, snow quantity has decreased, and important changes in agriculture and forest management have occurred. In light of changing conditions, the situation of Quebec bobcats needed reassessment. Thus, we analyzed harvest data to clarify the current status of bobcat populations in Quebec. From 1980 to 1991, bobcat harvest in Quebec was strongly correlated with bobcat harvest in Maine (USA), Nova Scotia (Canada), Ontario (Canada), and Vermont (USA). Extrapolations of harvest in Quebec relative to harvest in Maine, Ontario, Vermont, and Nova Scotia suggested an increase in number of bobcats after 1991. Mass of male and female bobcats before 1991 was less than mass of animals captured after 1991. Percentage of juveniles in the reported harvest before 1991 was higher than after 1991. However, percentage of males and litter sizes in the harvest did not differ before and after 1991. The geographic distribution of bobcats captured has gradually expanded after the closure of the harvest season. Our findings suggest that bobcat populations in Quebec have recovered from the 1985–1991 decline, and that the harvest season for this species could resume. This study also illustrates how managers can rely on data from neighboring jurisdiction to manage species when local harvest data is unavailable.     

Genetic diversity of coastal Northwest Atlantic herring populations: implications for management

Analysis of nine tetranucleotide microsatellite loci for Atlantic herring at five locations in the Northwest Atlantic including the Bras d'Or Lakes shows considerable genetic variation and significant population structure within the Coastal Nova Scotia management component, and among coastal populations and herring collected from Georges Bank. However, results are also consistent with gene flow across the Gulf of Maine. The magnitude of differentiation between the Bras d'Or Lakes sample and all others considered was sufficient to warrant further investigation. These data support the precautionary spawning-ground based management approach implemented in this area.     

Structural diversity as a habitat indicator for endangered lakeshore flora using an assemblage of common plant species in Atlantic Canada

Vegetation structure, defined by the height, cover, and types of plants, is an important component of habitat suitability for plant species or communities. The identification of potential habitat is a crucial knowledge gap for endangered Atlantic Coastal Plain Flora (ACPF), a group of taxonomically unrelated plants that share common habitat types and are mostly found on lakeshores and wetlands in the Atlantic coastal region of North America. Our objectives were to assess spatial patterns and relationships of ACPF richness and structural diversity indices at different scales and positions along the lakeshore-to-forest gradient. We sampled 16 sites at 7 lakes in southwestern Nova Scotia using contiguous 20 × 20 cm quadrats along 20 m transects, perpendicular to the waterline, and in 5 × 5 m grids, between the lake and the forest edge. We measured the cover of 19 ACPF species and structural elements at different heights and calculated structural diversity indices using the Shannon index. Spatial patterns were assessed using one- and two-dimensional wavelet variance and covariance. The edge of the zone of high ACPF richness coincided with greater structural diversity at the lakeshore edge. Herbaceous ACPF richness was positively associated with structural diversity at finer scales and on lakeshores, but negatively associated at coarser scales and farther from the waterline. A strong association of structural diversity with ACPF richness suggests it could be used as a habitat indicator for ACPF on lakeshores, which could help the identification and conservation of potential suitable shorelines for ACPF populations in Nova Scotia.     

Microsatellite analysis of the phylogeography, Pleistocene history and secondary contact hypotheses for the killifish, Fundulus heteroclitus

The mummichog, Fundulus heteroclitus, exhibits extensive latitudinal clinal variation in a number of physiological and biochemical traits, coupled with phylogeographical patterns at mitochondrial and nuclear DNA loci that suggest a complicated history of spatially variable selection and secondary intergradation. This species continues to serve as a model for understanding local and regional adaptation to variable environments. Resolving the influences of historical processes on the distribution of genetic variation within and among extant populations of F. heteroclitus is crucial to a better understanding of how populations evolve in the context of contemporary environments. In this study, we analysed geographical patterns of genetic variation at eight microsatellite loci among 15 populations of F. heteroclitus distributed throughout the North American range of the species from Nova Scotia to Georgia. Genetic variation in Northern populations was lower than in Southern populations and was strongly correlated with latitude throughout the species range. The most common Northern alleles at all eight loci exhibited concordant latitudinal clinal patterns, and the existence of an abrupt transition zone in allele frequencies between Northern and Southern populations was similar to that observed for mitochondrial DNA and allozyme loci. A significant pattern of isolation by distance was observed both within and between northern and southern regions. This pattern was unexpected, particularly for northern populations, given the recent colonization history of post-Pleistocene habitats, and was inconsistent with either a recent northward population expansion or a geographically restricted northern Pleistocene refugium. The data provided no evidence for recent population bottlenecks, and estimates of historical effective population sizes suggest that post-Pleistocene populations have been large throughout the species distribution. These results suggest that F. heteroclitus was broadly distributed throughout most of its current range during the last glacial event and that the abrupt transition in allele frequencies that separate Northern and Southern populations may reflect regional disequilibrium conditions associated with the post-Pleistocene colonization history of habitats in that region.