New brush-finch Atlapetes from Peru

We describe a brush-finch (Emberizidae: Atlapetes ) from central Peru, where it inhabits humid scrub on both sides of the deep canyon formed where the Rio Mantaro intersects the eastern Andean ridge. The species probably has a very restricted range. In another paper in this issue, by J. Garcia-Moreno and J. Fjeldså, its phylogenetic relationships and taxonomic rank are discussed in a broader context, based on mtDNA data.     

Phylogenetic relationships among Secale species revealed by amplified fragment length polymorphisms.

Amplified fragment length polymorphism (AFLP) data were utilized to analyze the phylogenetic relationships among 29 accessions representing 14 of the most commonly recognized ranked species or subspecies in the genus Secale. We observed 789 AFLP markers of 1130 fragments utilizing 18 P-/M- and E-/M- primer combinations. All polymorphic fragments were used to construct phenetic and phylogenetic trees. The resulting phenogram and cladogram had similar tree topologies. Cluster analysis showed that Secale sylvestre was the most distantly related to all other ryes. Annual forms were grouped together, and the perennial forms appeared more closely related to each other. This suggested that life cycle could have played an important role in determining the relationships among Secale species. Secale sylvestre was considered to be the most ancient species, whereas Secale cereale was the most recently evolved species. Amplified fragment length polymorphism analysis clearly separated all Secale species into only 3 major species groups, within the genus Secale: S. sylvestre, Secale montanum (syn. Secale strictum) for perennial forms, and S. cereale for annual forms. This study demonstrated that the AFLP approach is a useful tool for discriminating species differences, and also gave a much better resolution in discerning genetic relationships among Secale species as compared with previous studies using other approaches.     

MtDNA Sequences Support Monophyly of Hemispingus Tanagers

Tanagers of the genus Hemispingus comprise an array of 12 recognized species of rather dull-colored tanagers restricted to Andean forests. Four of these species are polytypic, with as many as seven subspecies recognized for H. superciliaris. Taxonomic relationships within this group, and with similar-looking Basileuterus warblers, have been confusing and not well understood. We used partial DNA sequences of the mitochondrial ND2 gene and a set of morphological characters to study their phylogenetic relationships. Our molecular dataset strongly supports the monophyly of Hemispingus (including the warbler-like species and the finch-like H. rufosuperciliaris) compared to other nine-primaried oscines (Ramphocelus, Chlorospingus, Atlapetes/Buarremon, Basileuterus) and indicates either that Atlapetes/Buarremon could be tanagers or that Chlorospingus could be finches. We propose a phylogeny containing three major clades: mostly greenish eye-browed birds (trifasciatus, atropileus, auricularis, calophrys), mostly gray warbler-like birds (superciliaris, verticalis, xanthophthalmus), and mostly ochraceous birds (rufosuperciliaris and goeringi, piurae, frontalis, melanotis). The relationships among these three clades are left unresolved. We suggest species status for H. auricularis and H. piurae. Our molecular data suggest that most of the diversity in Hemispingus tanagers predates the period of marked ecoclimatic fluctuations in the upper Pleistocene.     

A framework for analysing colour pattern geometry: adjacent colours

The analysis of colour pattern geometry is not as well advanced as the analysis of colour, although this reflects a lack of an analytical framework. The present study proposes an approach based on a consideration of which colours are adjacent to each other. Both vertebrate and invertebrate eyes do not take static images of the world but move across the field of view. As a consequence, the eye takes transects across the field of view responding to the colours and luminances within patches and to the colour and/or luminance transitions between patches. The framework and methods suggested here are based upon transects across colour patterns and make it possible to estimate colour pattern parameters that capture not only the relative areas of each patch class, but also the relative frequencies of colour/luminance transitions or adjacency. This allows tests of new hypotheses about colour patterns at the same time as including colour, pattern, and texture. Eleven groups of predictions are made with respect to the often conflicting needs of communication with conspecifics, avoiding predation, and finding food. New phenomena may be discovered as a result of these methods and predictions. For example, certain colour transitions may be used for species recognition even though the same colours are used by all species. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ??, ??–??.     

Evolutionary trends of microsatellites during the speciation process and phylogenetic relationships within the genus Secale

Eleven weedy or wild species or subspecies of the genus Secale L. were compared with a set of cultivated rye accessions, based on inter-simple sequence repeat (ISSR) markers to analyze their phylogenetic relationships. A total of 846 bands were amplified from reactions using 12 screening primers, including 79 loci with a mean of 10.1 alleles per locus. The number of amplified bands for each primer ranged from 12 to 134, with a mean of 70.5 amplified bands per primer. The presence and distribution of amplified bands in different accessions demonstrate that a rapid evolutionary trend of microsatellite repeats occurred during the speciation process from the perennial wild form to annual cultivated rye. In addition, variation, amplification, and deletion of microsatellites in genomes revealed phylogenetic relationships in the genus Secale. Analysis of the presence, number, and distribution of amplified bands in genomes, as well as the comparison with genetic similarity (GS) indices based on ISSR, indicate that Secale strictum subsp. africanum (Stapf) Hammer, Secale strictum anatolicum (Boiss.) Hammer, Secale sylvestre Host, and Secale strictum subsp. strictum (C. Presl) Hammer emerged in succession from a common ancestor of Secale following geographic separation and genetic differentiation. The annual weedy rye evolved from S. strictum subsp. strictum, which was domesticated as present-day cultivated rye. Data from ISSR analyses separated all investigated accessions of the genus Secale into three distinct groups. These results support the division of the genus Secale into three species: the annual wild species S. sylvestre; the perennial wild species S. strictum, including several differential subspecies forms such as strictum, africanum, and anatolicum; and S. cereale, including cultivated and weedy rye as subspecies forms.     

The use of nuclear DNA molecular markers for studying speciation and systematics as exemplified by the “Lacerta agilis complex” (Sauria: Lacertidae)

Four types of nuclear DNA markers identified by the taxonprint, RAPD, and IMP (Inter-MIR-PCR) methods, and the nucleotide sequences of satellite DNA monomers have been used to analyze the molecular genetic similarity between some populations, subspecies, and species of lizards combined into the group Lacerta s. str., as well as representatives of some other genera. The notions on the systematics and phylogeny of this group based on morphological and zoogeographic criteria have been compared to the conclusions based on molecular genetic data. The genus and species subdivisions of populations based on nuclear molecular markers and morphological characters generally agree with each other, the degree of genetic differences being correlated with the taxonomy suggested by zoomorphologists. The degree of differences between the subspecies of one of the species studied, Lacerta agilis, varies depending on the molecular markers used: according to the results of RAPD analysis, all subspecies substantially differ from one another, the variation within populations being small; with respect to other markers, the differences are smaller and not equivalent. The existence of the so-called eastern and western clades of this species earlier assumed by other researchers on the basis of mtDNA and morphological data has been confirmed. There are no distinct gradations exceeding individual variation in 14 populations of L. agilis exigua (the eastern clade) with respect to IMP markers, although these populations inhabit a vast area from the Ural Mountains to the Kabardino-Balkar Republic (the Caucasus). These data suggest that the subspecies has been rapidly spreading northwards since the Pleistocene glaciation (about 15,000 years ago).     

Genetic divergence in the superspecies Manacus

The bearded manakins in the genus Manacus are lekking, neotropical passerines. Male plumage colour varies with geographical location and classification is based solely on these plumage patterns. It has recently been suggested that in this group of birds, plumage patterns may be a misleading taxonomic character. In this study we used microsatellite variation in a collection of museum samples to establish the amount of genetic divergence between the previously described bearded manakin species/subspecies. We found substantial genetic substructuring between species/subspecies and that plumage patterns indeed may be a misleading taxonomic character because the presence of yellow in male nuptial plumage is found in most divergent forms. We did not detect a significant isolation by distance relationship although the P -value was close to significance. Physical barriers such as rivers and mountains may affect gene flow and play a role in shaping genetic structure of the genus Manacus . Accordingly, boundaries between species/subspecies often coincide with large rivers, mountains and seas.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 81 , 439–447.     

A revision of the brassoline genus Catoblepia (Lepidoptera: Rhopalocera)

The brassoline genus Catoblepia is revised: eight new subspecies are described, nine new synonymies established, the status of four species and subspecies is revised, one species ( singularis ) is returned to the genus Opsiphanes and ten lectotypes are designated. All known holotypes (20) and lectotypes (10) are figured, many for the first time. The refined taxonomy reveals an interesting pairing of the Andean subspecies of xanthicles and berecynthia and it is suggested that diese may be mimetic pairs. There is close agreement in the distribution of the Andean species and subspecies with die endemic centres previously recognized; east of the Andes, however, diere is no close correspondence and each of the subspecies has, in general, a distribution across several endemic centres.     

Taxonomic revision of hispaniola tiger beetles in the genus brasiella rivalier 1954 (coleoptera, carabidae, cicindelinae)

The Brasiella tiger beetle fauna on Hispaniola, the second largest island of the Greater Antilles, has more species diversity than currently recognized as all populations previously have been assigned to the insular endemic Brasiella dominicana (Mandl). A comparative study of adult morphology, particularly male genitalic and female abdominal characters, for available Brasiella specimens from populations on Hispaniola, proposes eight additional new species also endemic to this island. Except for three sympatric species in the Sierra de Baoruco in southern Dominican Republic occurring in different habitats, all the Brasiella on Hispaniola appear to be allopatric. Most species occur in the major mountainous regions of Hispaniola. Two species, however, are known only from river floodplains in the southern coastal plain of the Dominican Republic. Brasiella dominicana (Mandl) and Brasiella ocoa, new species, occur along river floodplains emanating from the eastern end of the Cordillera Central in the Dominican Republic. Two new Brasiella species, Brasiella bellorum, and Brasiella philipi, occur in the Cordillera Central, Dominican Republic, the former species from central portions, and the latter species from north slopes of this mountain range, respectively. Three new Brasiella species, Brasiella rawlinsi, Brasiella iviei, and Brasiella youngi, are isolated in the Sierra de Baoruco, Dominican Republic, where each occupies a different habitat along an altitudinal gradient. The two new Brasiella species in Haiti are Brasiella darlingtoniana, in the Massif de la Selle, and Brasiella davidsoni, in the Massif de la Hotte. All nine Brasiella species on Hispaniola, along with Brasiella viridicollis (Dejean) and its two subspecies on Cuba, belong to the viridicollis species group of the genus Brasiella based on criteria presented in earlier published phylogenetic studies of Brazilian and West Indian tiger beetles. The subspecies Brasiella viridicollis fernandozayasi (Kippenhan, Ivie and Hopp) may represent a distinct species within this species group, whereas removal of Brasiella wickhami (W. Horn) from this species group seems warranted based on evidence presented. A general overview of species relationships for the Brasiella on Hispaniola are discussed, along with the current and ancestral geographic distributions of the Brasiella viridicollis species group in the West Indies.     

秦岭羚牛高度重复序列DNA片段的分子克隆和序列分析

羚牛（Budorcas taxicolor)属偶蹄目（Artiodactyla)、牛科（Bovidae),为我国一类大型珍贵保护动物。我们从其基因组中克隆得到若干约800bp的BamHI高度重复序列并对部分克隆进行了序列测定,发现它们显示了很高的同源性。利用其中一个单元为探针,对限制酶消化后的羚牛基因组DNA作杂交分析,发现其杂交谱带不具有个体及亚种间特异性,说明该重复序列在羚牛基因组中具有保守的分布和排列。在牛科动物中,羚牛BamHI片段与绵羊属和山羊属的相关序列具有高度同源性,而与水牛和家牛序列差异较大。这些结果为羚牛与羊亚科物种亲源关系较近的分类学观点提供了分子生物学证据。有证据表明,这些片段可能代表羚牛染色体着丝点的卫星DNA单体。     

The genus <Emphasis Type="Italic">Crataegus</Emphasis> L.: An ecological and molecular study

This study aimed at the indentification of the species and genotypes of the genus Crataegus in Syria and determination of the genetic relationships among them based on the analysis of genomic and chloroplast DNA (cpDNA) using ISSRs and CAPS techniques. Morphological characterization carried out on 49 Crataegus samples collected from different geographical regions of Syria revealed four Crataegus species: momogyna, C. sinaica, C. aronia and C. azarolus. In the dendrogram constructed for those samples based on ISSRs (20 primers), all samples that belong to C. monogyna were clustered in one cluster. Samples of the other three species were overlaped in another cluster. Two samples of these were the most distant from all other samples in the dendrogram and were suggested to represent hybrid species or subspecies. When CAPS technique was applied on four Crataegus samples that represent the four suggested species using 22 cpDNA regions and 90 endonucleases, no polymorphism was detected neither in amplification products sizes nor in restriction profiles. The inability of detection of variation in cpDNA among species suggested can be attributed to the low level of evolution of the cpDNA in the genus, and to the possibility that some of these species are either subspecies or hybrids since the cpDNA is inherited through one parent only.     

TAXONOMIC STATUS OF THE GENUS SOTALIA: SPECIES LEVEL RANKING FOR "TUCUXI" (SOTALIA FLUVIATILIS) AND "COSTERO" (SOTALIA GUIANENSIS) DOLPHINS

Dolphins of the genus Sotalia are found along the Caribbean and Atlantic coasts of Central and South America and in the Amazon River and most of its tributaries. At present, the taxonomy of these dolphins remains unresolved. Although five species were described in the late 1800s, only one species is recognized currently ( Sotalia fluviatilis ) with two ecotypes or subspecies, the coastal subspecies ( Sotalia fluviatilis guianensis ) and the riverine subspecies ( Sotalia fluviatilis fluviatilis ). Recent morphometric analyses, as well as mitochondrial DNA analysis, suggested recognition of each subspecies as separate species. Here we review the history of the classification of this genus and present new genetic evidence from ten nuclear and three mitochondrial genes supporting the elevation of each subspecies to the species level under the Genealogical/Lineage Concordance Species Concept and the criterion of irreversible divergence. We also review additional evidence for this taxonomic revision from previously published and unpublished genetic, morphological, and ecological studies. We propose the common name "costero" for the coastal species, Sotalia guianensis ( Van Bénéden 1864 ), and accept the previously proposed "tucuxi" dolphin, Sotalia fluviatilis (Gervais, 1853), for the riverine species.     

Taxonomic notes on the genus Illicium Linn.

Taxonomic notes of the genus Illicium Linn. are presented based mainly on herbarium studies involving more than 10 thousand speciemens from 120 herbaria worldwide, Three new combinations are made, viz, I. fargesii Finet & Gagnep. Subsp. szechuanensis (Cheng) Q. Lin, I. parvifolium Merr. Subsp. oligandrum (Merr. & Chun)Q. Lin and I. micranhum Dunn subsp. tsangii (A. C. Smith)Q. Lin, and thirteen species, six subspecies, three varieties and two forms are reduced to synonyms. Thirty-four species, three subspecies and one variety are recognized inthis genus.     

To the knowledge of the leaf beetle genus Cystocnemis (Coleoptera, Chrysomelidae)

Four subspecies of Cystocnemis discoidea are distinguished; two subspecies are described as new to science based on investigation of intraspecific variation in different parts of the species range, and ssp. gebleri was resurrected from synonymy. The ways of speciation in highland-hollow landscapes are discussed. The alpine subspecies C. discoidea oreas ssp. n. has an altibiome disjunction with the nominotypical subspecies. Similarity of the alpine subspecies of C. discoidea to the species from the subgenus Entomomela was found to be the reason of permanent confusion of representatives of these taxa. The subgenus Entomomela is transferred from the genus Oreomela to the genus Cystocnemis. A key to species and subspecies of the genus Cystocnemis is given.     

中国豆科植物分类系统概览

豆科是被子植物中继兰科和菊科之后的第三大科,其中包括三个亚科:即云实亚科、含羞草亚科和蝶形花亚科.本文根据最新资料,整理出世界豆科有42族、634属、17 834种,中国有33族、169属、1 518种(另外含15亚种、167变种和41变型),其中外来种158种(含亚种和变种,隶属于73属).为建立中国豆科植物数据库,本文在Polhill豆科植物分类系统的基础上,结合一些新的资料,提出中国豆科植物系统概要.文中按分类等级进行排序,每一属含有世界和中国种数及分布.     

SPECIATION AND FEATHER ORNAMENTATION IN BIRDS

The hypothesis that sexual selection promotes speciation has rarely been tested. We identified 70 evolutionarily independent events of feather ornaments in birds. For each focal species we noted the number of ornamented and nonornamented species belonging to its genus and its number of subspecies, as well as its mating system and the extent of its geographic range. For purposes of comparison, we randomly chose a second, nonornamented species for which we obtained information on the number of subspecies, and in cases in which the nonornamented species was in the same genus, we chose a third, nonornamented species in a related genus and obtained the same information. We then noted the number of species in each genus and the difference in numbers of species, or species richness, between paired genera. For the genera of the focal ornamented species, we regressed number of ornamented species on number of nonornamented species and found a positive relationship. As number of species per genus rose, number of ornamented species per genus rose more rapidly, indicating that more speciose genera have a higher proportion of ornamented species than less speciose genera. We then took the deviations from this regression, the residual number of species, and regressed them on the differences in species richness between the paired genera. This relationship was positive indicating that ornamented genera with more than the expected number of ornamented species were more speciose with respect to their paired genera than were genera with fewer than the expected number of ornamented species. Finally, we compared the deviations from this regression, the residual number of ornamented species, with species' mating system and found a greater residual number of ornamented species among species whose mating system is associated with greater skew in male mating success and thus more intense sexual selection. Ornamented species had more subspecies than nonornamented species, even when controlling for geographic range, suggesting an association between subspeciation and ornaments.     

The taxonomy, distribution and faunal succession of Buliminus (Pulmonata: Enidae) in Israel

The taxonomy, intraspecific variation and distribution of each of the eight Israeli species of the rock-dwelling landsnail Buliminus is described, with a new subspecies labrosus jiftliki. The general biology of the genus is briefly described, and a key to all species and subspecies is given.
Intraspecific and interspecific variation is partly associated with different environmental conditions. In the more hot regions of their distribution areas, the snails have a narrow shell, a smaller aperture, a more smooth shell surface and thick lips. The possible adaptive significance of these characteristics in hot regions is discussed.
The distribution limits of many species closely coincide with both isohyets and types of substratum, suggesting that rainfall and substratum are the most important physical factors determining distribution. Vegetation in the Mediterranean region could perhaps influence such aspects of the distribution as the choice of northern or southern slopes.
It is suggested that in Israel, in each climatic zone and within the limits determined by these physical factors, a faunal succession is today in operation. In the mediterranean, steppe, steppe periphery and arid regions, species which evolved or arrived recently are displacing more ancient elements. As compared with the ancient fauna, the new species have less rigid ecological requirements and are more capable of adjusting themselves to severe environmental conditions by altering their shell proportions. The last relics of the ancient fauna survive in the Judean Hills and along the isohyet 70 mm, on the brim of the extreme desert.
In I. labrosus the presence of a reverse cline, in both shell and genitalia, near the borderline with l . spirectinus , and, in addition, the presence along the borderline of a few intermediate individuals, suggests that l. labrosus is "rolling back" l. spirectinus by keeping up a narrow belt of hybridization.     

The genus Crataegus L.: an ecological and molecular study

This study aimed at the indentification of the species and genotypes of the genus Crataegus in Syria and determination of the genetic relationships among them based on the analysis of genomic and chloroplast DNA (cpDNA) using ISSRs and CAPS techniques. Morphological characterization carried out on 49 Crataegus samples collected from different geographical regions of Syria revealed four Crataegus species: C. monogyna, C. sinaica, C. aronia and C. azarolus. In the dendrogram constructed for those samples based on ISSRs (20 primers), all samples that belong to C. monogyna were clustered in one cluster. Samples of the other three species were overlaped in another cluster. Two samples of these were the most distant from all other samples in the dendrogram and were suggested to represent hybrid species or subspecies. When CAPS technique was applied on four Crataegus samples that represent the four suggested species using 22 cpDNA regions and 90 endonucleases, no polymorphism was detected neither in amplification products sizes nor in restriction profiles. The inability of detection of variation in cpDNA among species suggested can be attributed to the low level of evolution of the cpDNA in the genus, and to the possibility that some of these species are either subspecies or hybrids since the cpDNA is inherited through one parent only.     

A new genus and species of African Phaneropterinae (Orthoptera: Tettigoniidae), with data on its ecology,bioacoustics and chromosomes

A new genus is proposed for a new East African Phaneropterinae species, Lunidia viridis, occurring on Mt. Kilimanjaro, Tanzania. Based on 33 records, notes on distribution and habitat are given, as well as acoustical data provided. Climate and vegetation parameters obtained along several transects on Mt. Kilimanjaro were evaluated describing the ecological niche of the new species. This interdisciplinary approach allows not only a profound characterisation of the ecological demands of the new genus but also predictions of the potential distribution area, which is tested for the first time for an African bush cricket species. Lunidia viridis n. gen. n. sp. occurs within humid and perhumid forests and Chagga home gardens, avoiding subhumid conditions on the mountain. It is found from 1,330 m upwards on the southern slopes, whereas the same ecological conditions are expressed from 1,930 m upwards on the drier northern slopes. Lunidia viridis has an unusually complex and variable song, which is described from field and laboratory recordings. The FISH technique for characterizing chromosomes is applied for the first time for an African species; L. viridis exhibits a karyotype typical for most Tettigoniidae.     

Cell wall teichoic acids: structural diversity, species specificity in the genus Nocardiopsis, and chemotaxonomic perspective

Data on the structures of cell wall teichoic acids, the anionic carbohydrate-containing polymers, found in many Gram-positive bacteria have been summarized and the polymers of the actinomycete genus Nocardiopsis have been considered from the taxonomic standpoint. The structures of these polymers or their combinations have been demonstrated to be indicative of each of seven Nocardiopsis species and two subspecies, verified by the DNA-DNA relatedness data, and to correlate well with the grouping of the organisms based on 16S rDNA sequences. As each of the intrageneric taxa discussed is definable by the composition of teichoic acids, the polymers are considered to be valuable taxonomic markers for the Nocardiopsis species and subspecies. The (13)C NMR spectra of the polymers, data on the products of their chemical degradation, and distinguishing constituents of whole cell walls derived from teichoic acids are discussed, which are useful for identification of certain polymers and members of the genus Nocardiopsis at the species and subspecies level in microbiological practice.