Dolomite limits acidification of a biofilter degrading dimethyl sulphide

The applicability of dolomite particlesto control acidificationin a Hyphomicrobium MS3inoculated biofilter removingdimethyl sulphide (Me₂S) wasstudied. While direct inoculationof the dolomite particles with theliquid microbial culture was notsuccessful, start-up ofMe₂S-degradation in thebiofilter was observed when thedolomite particles were mixed with33% (wt/wt) of Hyphomicrobium MS3-inoculatedcompost or wood bark material.Under optimal conditions, anelimination capacity (EC) of 1680~g Me₂S m^-3 d^-1 wasobtained for the compost/dolomitebiofilter. Contrary to a wood barkor compost biofilter, no reductionin activity due to acidificationwas observed in these biofiltersover a 235 day period because ofthe micro environmentneutralisation of the microbialmetabolite H₂SO₄ with thecarbonate in the dolomite material.However, performance of thebiofilter decreased when themoisture content of the mixedcompost/dolomite material droppedbelow 15%. Next to this, nutrientlimitation resulted in a gradualdecrease of the EC andsupplementation of a nitrogensource was a prerequisite to obtaina long-term high EC (> 250 gMe₂S m^-3 d^-1) forMe₂S. In relation to thisnitrogen supplementation, it wasobserved that stable ECs forMe₂S were obtained when thisnutrient was dosed to the biofilterat a Me₂S-C/NH₄Cl-Nratio of about 10.Abbreviations:DW – dry weight,EC – elimination capacity,Me₂S – dimethyl sulphide,OL – organic loading rate,VS - volatile solids     

Emission of carbonyl sulfide by Thiobacillus thioparus grown with thiocyanate in pure and mixed cultures

Abstract The biological activity of the heat-stable enterotoxin of Vibrio cholerae non-O1 (NAG-ST) was found to be predominantly associated with the periplasmic extract (about four-fold higher than the culture supernatant) of a recombinant E. coli (JM109) strain carrying the NAG-St toxin gene. Four molecular species of NAG-ST, two each from the periplasmic extract and culture supernatant of JM109, were purified. Amino acid sequence analysis of the four NAG-ST peptides isolated by HPLC revealed that they all differed from that of the mature 17-amino acid residue NAG-ST released by V. cholerae non-O1. The M _r-values of the peptides obtained from the periplasmic extract were 4331 and 2785, while those recovered from the culture supernatant were 3154 and 2785. It thus appears that V. cholerae NAG-ST is synthesized as larger molecules in the recombinant E. coli strain. The differences in sizes of the exported NAG-ST molecule could relate to difference in the enzyme cleavage system between E. coli and V. cholerea .     

排硫硫杆菌D6中硫化氢脱氢酶的纯化及性质

从烟气生物脱硫系统的好氧产硫磁性稳态流化床反应器中,经反复纯化分离出脱硫优势菌排硫硫杆菌菌株D6,采用四步工艺纯化出膜结合型硫化氢脱氢酶。SDS-PAGE测定显示其由α1β1亚基组成,光谱分析表明含有1 mol FAD/mol酶,血红素染色揭示小亚基上结合有1 mol血红素c/mol酶,该酶属于氧还蛋白家族。该酶的最适pH为8.6,对马心细胞色素c和硫化物的表观Km分别为2.5μmol/L和6.1μmol/L,反应计量实验表明其氧化产物为元素硫。硫化氢脱氢酶受到硫和亚硫酸盐的抑制,100μmol/L的氰化钾对该酶抑制率达72%。     

Removal of dimethyl sulfide,methyl mercaptan,and hydrogen sulfide by immobilized Thiobacillus thioparus TK-m

Cells of Thiobacillus thioparus TK-m were immobilized on cylindrical porous polypropylene pellets (5 mmφ × 5 mm) which were packed in an acrylic cylinder of 50 mm inner diameter up to the height of 800 mm. When a sulfur-containing malodorous gas was charged to this packed tower at the superficial velocity of 0.1 m/s, maximum loading capacity (mmol/l·d) for a malodorous gas to attain the removal rate of 95% or more was: 3.65 for dimethyl sulfide, 8.74 for methyl mercaptan, and 17.36 for hydrogen sulfide. At this time, the inlet concentration (μl/l) of the malodorous compound was: 7.44 for dimethyl sulfide, 17.8 for methyl mercaptan, and 35.4 for hydrogen sulfide. For every compound, higher loading resulted in greater removal quantities. The removal rate of dimethyl sulfide was not overly affected by the presence of a large amount of easily decomposable hydrogen sulfide.     

Removal of methanethiol, dimethyl sulfide, dimethyl disulfide, and hydrogen sulfide from contaminated air by Thiobacillus thioparus TK-m

Methanethiol, dimethyl sulfide, dimethyl disulfide, and hydrogen sulfide were efficiently removed from contaminated air by Thiobacillus thioparus TK-m and oxidized to sulfate stoichiometrically. More than 99.99% of dimethyl sulfide was removed when the load was less than 4.0 g of dimethyl sulfide per g (dry cell weight) per day.     

Removal of methanethiol, dimethyl sulfide, dimethyl disulfide, and hydrogen sulfide from contaminated air by Thiobacillus thioparus TK-m.

Methanethiol, dimethyl sulfide, dimethyl disulfide, and hydrogen sulfide were efficiently removed from contaminated air by Thiobacillus thioparus TK-m and oxidized to sulfate stoichiometrically. More than 99.99% of dimethyl sulfide was removed when the load was less than 4.0 g of dimethyl sulfide per g (dry cell weight) per day.     

Molecular diversity of bacterial production of the climate-changing gas, dimethyl sulphide, a molecule that impinges on local and global symbioses

This paper describes the ddd genes that are involved in theproduction of the gas dimethyl sulphide from the substrate dimethylsulphoniopropionate(DMSP), an abundant molecule that is a stress protectant inmany marine algae and a few genera of angiosperms. What is knownof the arrangement of the ddd genes in different bacteria thatcan undertake this reaction is reviewed here, stressing thefact that these genes are probably subject to horizontal genetransfer and that the same functions (e.g. DMSP transport) maybe accomplished by very different mechanisms. A surprising numberof DMS-emitting bacteria are associated with the roots of higherplants, these including strains of Rhizobium and some rhizospherebacteria in the genus Burkholderia. One newly identified strainthat is predicted to make DMS is B. phymatum which is a highlyunusual β-proteobacterium that forms N₂-fixing noduleson some tropical legumes, in this case, the tree Machaeriumlunatum, which inhabits mangroves. The importance of DMSP catabolismand DMS production is discussed, not only in terms of nutritionalacquisition by the bacteria but also in a speculative scheme(the ‘messy eater’ model) in which the bacteriamay make DMS as an info-chemical to attract other organisms,including invertebrates and other plankton. Key words: Acyl CoA transferase, Burkholderia, CLAW hypothesis, dimethyl sulphide, dimethylsulphoniopropionate, Marinomonas, nitrogen fixation, Rhizobium, rhizosphere, root nodules, Spartina Received 30 May 2007; Revised 27 September 2007 Accepted 1 October 2007     

Heterotrophic growth of Thiobacillus acidophilus in batch and chemostat cultures

Heterotrophic growth of the facultatively chemolithoautotrophic acidophile Thiobacillus acidophilus was studied in batch cultures and in carbon-limited chemostat cultures. The spectrum of carbon sources supporting heterotrophic growth in batch cultures was limited to a number of sugars and some other simple organic compounds. In addition to ammonium salts and urea, a number of amino acids could be used as nitrogen sources. Pyruvate served as a sole source of carbon and energy in chemostat cultures, but not in batch cultures. Apparently the low residual concentrations in the steady-state chemostat cultures prevented substrate inhibition that already was observed at 150 M pyruvate. Molar growth yields of T. acidophilus in heterotrophic chemostat cultures were low. The Y _max and maintenance coefficient of T. acidophilus grown under glucose limitation were 69 g biomass · mol^–1 and 0.10 mmol · g^–1 · h^–1, respectively. Neither the Y _max nor the maintenance coefficient of glucose-limited chemostat cultures changed when the culture pH was increased from 3.0 to 4.3. This indicates that in T. acidophilus the maintenance of a large pH gradient is not a major energy-requiring process. Significant activities of ribulose-1,5-bisphosphate carboxylase were retained during heterotrophic growth on a variety of carbon sources, even under conditions of substrate excess. Also thiosulphate- and tetrathionate-oxidising activities were expressed under heterotrophic growth conditions.     

Degradation of O,O-Dimethyl Phosphorodithioate by Thiobacillus thioparus TK-1 and Pseudomonas AK-2

O,O-Dimethyl phosphorodithioate (DMDTP) is an initial breakdown product of organophosphorus pesticides in fields. DMDTP is also released to natural environments by pesticide manufacturers. DMDTP-degrading microorganisms were not known. We isolated two bacteria from activated sludge. One of them, strain TK-1 identified as Thiobacillus thioparus, utilized DMDTP as a sole energy source and produced dimethyl phosphate (DMP) and sulfate. The other, strain AK-2 identified as Pseudomonas sp., utilized DMP as a sole energy and carbon source and degraded DMP to inorganic orthophosphate (P_i). DMDTP was degraded to P_i by the coaction of the two bacteria.     

Ethene (ethylene) production in the marine macroalga Ulva (Enteromorpha) intestinalis L. (Chlorophyta, Ulvophyceae): effect of light-stress and co-production with dimethyl sulphide

Ethene (ethylene; H₂C = CH₂) is one of a range of non-methane hydrocarbons (NMHC) that affect atmospheric chemistry and global climate. Ethene acts as a hormone in higher plants and its role in plant biochemistry, physiology and ecology has been the subject of extensive research. Ethene is also found in seawater, but despite evidence that marine microalgae and seaweeds can produce ethene directly, its production is generally attributed to photochemical breakdown of dissolved organic matter. Here we confirmed ethene production in cultured samples of the macroalga Ulva (Enteromorpha) intestinalis. Ethene levels increased substantially when samples acclimatized to low light conditions were transferred to high light, and ethene addition reduced chlorophyll levels by 30%. A range of potential inhibitors and inducers of ethene biosynthesis were tested. Evidence was found for ethene synthesis via the 1-aminocylopropane-1-acrylic acid (ACC) pathway and ACC oxidase activity was confirmed for cell-free extracts. Addition of acrylate, a potential ethene precursor in algae that contain the compatible solute dimethylsulphoniopropionate, doubled the ethene produced but no acrylate decarboxylase activity was found. Nonetheless the data support active production of ethene and we suggest ethene may play a multifaceted role in algae as it does in higher plants.     

Removal of minor methylation products 7-methyl adenine and 3-methylguanine from DNA ofescherichia coli treated with dimethyl sulphate

Persistence of methylpurines in DNA methylated in vitro and in vivo inEscherichia coli WP2 cells, by dimethyl sulphate (DMS) was studied, with particular reference to the minor products 7-methyladenine and 3-methyl-guanine, not previously investigated in this respect, but known to be removed from DNA in vitro by spontaneous hydrolysis at neutral pH.The half-life of 7-methyladenine in vivo was relatively short (2.6 ± 0.2 h) but not significantly shorter than in vitro at pH 7.2, 37°C. The half-life of 3-methylguanine was 3.6 ± 0.3 h in vivo, markedly shorter than in vitro, where its stability was somewhat greater than that of 7-methylguanine. Enzymatic excision of 3-methylguanine was therefore indicated to occur inE. coli.Previous findings that 7-methylguanine is probably not enzymatically excised from DNA in vivo, whereas 3-methyladenine is rapidly removed, were confirmed, and additional support for the concept of enzymatic removal of 3-methyladenine was obtained by showing extensive inhibition of its removal from cells treated with iodoacetamide prior to methylation.It is suggested that methylations of adenine or guanine in DNA at N-3 constitute blocks to template activity of DNA and stimulate a “repair” response of enzymatic removal of 3-methylpurines. Possible valence bond structures for 3-methylpurine residues in DNA are discussed, leading to the suggestion that ionized forms with positively charged amino groups may be the most effective blocks to template activity.     

Oxidation of reduced sulphur compounds by intact cells of Thiobacillus acidophilus

Oxidation of reduced sulphur compounds by Thiobacillus acidophilus was studied with cell suspensions from heterotrophic and mixotrophic chemostat cultures. Maximum substrate-dependent oxygen uptake rates and affinities observed with cell suspensions from mixotrophic cultures were higher than with heterotrophically grown cells. ph Optima for oxidation of sulphur compounds fell within the pH range for growth (pH 2–5), except for sulphite oxidation (optimum at pH 5.5). During oxidation of sulphide by cell suspensions, intermediary sulphur was formed. Tetrathionate was formed as an intermediate during aerobic incubation with thiosulphate and trithionate. Whether or not sulphite is an inter-mediate during sulphur compound oxidation by T. acidophilus remains unclear. Experiments with anaerobic cell suspensions of T. acidophilus revealed that trithionate metabolism was initiated by a hydrolytic cleavage yielding thiosulphate and sulphate. A hydrolytic cleavage was also implicated in the metabolism of tetrathionate. After anaerobic incubation of T. acidophilus with tetrathionate, the substrate was completely converted to equimolar amounts of thiosulphate, sulphur and sulphate. Sulphide- and sulphite oxidation were partly inhibited by the protonophore uncouplers 2,4-dinitrophenol (DNP) and carbonyl cyanide m-chlorophenylhydrazone (CCCP) and by the sulfhydryl-binding agent N-ethylmaleimide (NEM). Oxidation of elemental sulphur was completely inhibited by these compounds. Oxidation of thiosulphate, tetrathionate and trithionate was only slightly affected. The possible localization of the different enzyme systems involved in sulphur compound oxidation by T. acidophilus is discussed.     

Mineral and iron oxidation at low temperatures by pure and mixed cultures of acidophilic microorganisms

An enrichment culture from a boreal sulfide mine environment containing a low-grade polymetallic ore was tested in column bioreactors for simulation of low temperature heap leaching. PCR-denaturing gradient gel electrophoresis and 16S rRNA gene sequencing revealed the enrichment culture contained an Acidithiobacillus ferrooxidans strain with high 16S rRNA gene similarity to the psychrotolerant strain SS3 and a mesophilic Leptospirillum ferrooxidans strain. As the mixed culture contained a strain that was within a clade with SS3, we used the SS3 pure culture to compare leaching rates with the At. ferrooxidans type strain in stirred tank reactors for mineral sulfide dissolution at various temperatures. The psychrotolerant strain SS3 catalyzed pyrite, pyrite/arsenopyrite, and chalcopyrite concentrate leaching. The rates were lower at 5 degrees C than at 30 degrees C, despite that all the available iron was in the oxidized form in the presence of At. ferrooxidans SS3. This suggests that although efficient At. ferrooxidans SS3 mediated biological oxidation of ferrous iron occurred, chemical oxidation of the sulfide minerals by ferric iron was rate limiting. In the column reactors, the leaching rates were much less affected by low temperatures than in the stirred tank reactors. A factor for the relatively high rates of mineral oxidation at 7 degrees C is that ferric iron remained in the soluble phase whereas, at 21 degrees C the ferric iron precipitated. Temperature gradient analysis of ferrous iron oxidation by this enrichment culture demonstrated two temperature optima for ferrous iron oxidation and that the mixed culture was capable of ferrous iron oxidation at 5 degrees C.     

Energetics of mixotrophic and autotrophic C1-metabolism by Thiobacillus acidophilus

Although the facultatively autotrophic acidophile Thiobacillus acidophilus is unable to grow on formate and formaldehyde in batch cultures, cells from glucose-limited chemostat cultures exhibited substrate-dependent oxygen uptake with these C₁-compounds. Oxidation of formate and formaldehyde was uncoupler-sensitive, suggesting that active transport was involved in the metabolism of these compounds. Formate- and formaldehyde-dependent oxygen uptake was strongly inhibited at substrate concentrations above 150 and 400 M, respectively. However, autotrophic formate-limited chemostat cultures were obtained by carefully increasing the formate to glucose ratio in the reservoir medium of mixotrophic chemostat cultures. The molar growth yield on formate (Y=2.5 g ·mol^-1 at a dilution rate of 0.05 h^-1) and RuBPCase activities in cell-free extracts suggested that T. acidophilus employs the Calvin cycle for carbon assimilation during growth on formate. T. acidophilus was unable to utilize the C₁-compounds methanol and methylamine. Formate-dependent oxygen uptake was expressed constitutively under a variety of growth conditions. Cell-free extracts contained both dye-linked and NAD-dependent formate dehydrogenase activities. NAD-dependent oxidation of formaldehyde required reduced glutathione. In addition, cell-free extracts contained a dye-linked formaldehyde dehydrogenase activity. Mixotrophic growth yields were higher than the sum of the heterotrophic and autotrophic yields. A quantitative analysis of the mixotrophic growth studies revealed that formaldehyde was a more effective energy source than formate.     

Diffusion of N2, O2, H2S and SO2 in MFI and 4A zeolites by molecular dynamics simulations

This paper presents diffusion data of N₂, O₂, H₂S and SO₂ in MFI and 4A zeolites obtained by molecular dynamics simulations, especially its dependence on temperature and loading. At high loadings and temperatures, the order of self-diffusivity of guests in two zeolites is O₂ > N₂ > H₂S>SO₂. The diffusion behaviour is different in different zeolites at lower loadings, reflecting different influences from straight channels (MFI) and α-cages (4A). Furthermore, with increasing loading, the self-diffusivity of guest molecules decreases in MFI but generally increases in 4A. The centre of mass (COM) probability densities and diffusion trajectories of guests give insight into molecular-level diffusion process. The simulation results reveal that with increasing loading, the diffusion mechanism would change from the inter-pore to intra-pore diffusion in MFI. However, in 4A, the intra-pore diffusion is predominant at low and high loadings, but inter-pore diffusion is more important at moderate loadings.     

氧化亚铁硫杆菌的形态及对Fe2+的氧化研究

在纯培养的条件下,对江西德兴铜矿酸性矿坑水中分离出的一株氧化亚铁硫杆菌(Thiobacillus ferrooxidans)的细胞形态、生长条件以及对Fe2 的氧化进行了初步研究。透射电子显微镜检查的结果表明,其成熟菌体大小均一,有较好的运动性;采用光学显微镜对微生物进行菌群观测和利用血小板计数器法对细菌计数的结果表明,在摇床转速为160r/min的条件下,T.f.菌在9K液体培养基中最适生长条件为温度30℃左右,最佳初始pH 2.0;用重铬酸钾滴定法测定铁的结果表明,在摇床转速为160r/min的条件下,pH值1.7,温度30℃时T.f.菌对Fe2 的氧化速率最大,约为0.58g/L·h。     

Repair processes and the response of dividing and non-dividing cells to methyl methanesulphonate and dimethyl sulphate.

A method for producing a viable non-dividing population of Chinese hamster V79 cells in suspension is described and the characteristics of the population outlined. The stationary population is more sensitive to methylating agents than a similar but exponentially growing population, the increased sensitivity arising from the loss of the shoulder from the survival curve. The extent of reaction of the agent with cellular macromolecules is similar in both cases. The repair capabilities of the two populations was examined. Non-semiconservative DNA repair synthesis occurs whether the cells are in a growth or no-growth condition when insulted. Repair of single-strand breaks, which arise following methylation, also proceeds up to the size of the replicon. The relationship of this stationary population to other no-growth conditions and its utility as a model for carcinogenesis studies is discussed.