Expectations of means and genetic variances in backcross populations

Summary The genetic variance among F₂-derived lines of backcrosses (BC_gF₂-derived lines) depends on the backcross generation (g), the number of F₁ plants crossed and selfed in generations 1 through g, and the number of BC_gF₂-derived lines evaluated. Additive genetic variance decreases linearly with backcrossing when one BCF₁ plant per generation is crossed and selfed. The relationship is curvilinear if more than one BCF₁ plant is used; as the number of BCF₁ plants increases, additive genetic variance among BC₁F₂-derived lines approaches that among BC₀F₂-derived lines. The effect of population size on genetic variance is due both to fixation of alleles in previous generations and to sampling of genotypes in the population being evaluated. Dominance and repulsion linkage can cause small increases in genetic variance from BC₀ to BC₁.Joint contribution of USDA-ARS and Journal Paper No. J-11095 of the Iowa Agriculture and Home Economics Experiment Station, Ames, Iowa. Project No. 2471     

Mapping genes essential for embryo development in Arabidopsis thaliana.

Summary We have previously isolated and characterized over 90 recessive mutants of Arabidopsis thaliana defective in embryo development. These emb mutants have been shown to differ in lethal phase, extent of abnormal development, and response in culture. We demonstrate in this report the value and efficiency of mapping emb genes relative to visible and molecular markers. Sixteen genes essential for embryo development were mapped relative to visible markers by analyzing progeny of selfed F₁ plants. Embryonic lethals are now the most common type of visible marker included on the linkage map of Arabidopsis. Backcrosses were used in several cases to orient genes relative to adjacent markers. Three genes were located to chromosome arms with telotrisomics by screening for a reduction in the percentage of aborted seeds produced by F₁ plants. A restriction fragment length polymorphism (RFLP) mapping strategy that utilizes pooled EMB/EMB F₂ plants was devised to increase the efficiency of mapping embryonic lethals relative to molecular markers. This strategy was tested by demonstrating that the biol locus of Arabidopsis is within 0.5 cM of an existing RFLP marker. Mapping embryonic lethals with both visible and molecular markers may therefore help to identify large numbers of genes with essential functions in Arabidopsis.     

Cytoplasmic male sterility and nuclear restorer genes in a natural population of Beta maritima: genetical and molecular aspects

Summary One natural population (F₀ generation) of Beta maritima situated on the French Atlantic coast has been analysed. It was composed of 62% female, 30% hermaphrodite and 8% intermediate plants. The analysis of half-sib progeny (F₁ generation) obtained from in situ open pollination demonstrates the cytoplasmic determination of male sterility in Beta maritima and the restoration of fertility by nuclear genes. The mitochondrial DNA (mtDNA) and the chloroplast DNA (ctDNA) of sixteen F₁ plants, extracted from offspring of the three sexual phenotypes, were analysed using the restriction enzymes Sal I and Bam HI, respectively. Two cytoplasmic lines with their own peculiar genetic characteristics were distinguished using the restriction enzyme patterns of mtDNA: (i) the S cytoplasmic line was found in segregating progeny of two F₀ plants; all three phenotypes were produced (that is, progeny including hermaphrodite, female and intermediate plants); (ii) the N cytoplasmic line was found in the progeny of one F₀ hermaphrodite plant; this produced only hermaphrodites. Thus, segregating and non-segregating hermaphrodite F₀ plants can be distinguished. The nuclear genes maintaining sterility or restoring fertility are expressed in line S. At the same time the analysis of Beta vulgaris material has been carried out at the molecular level: N cytoplasmic lines of B. vulgaris and B. maritima differed only by 3 fragments of mtDNA; but the S cytoplasmic line of B. maritima was very different from Owen's cytoplasmic male sterile line of B. vulgaris. No variation in the ctDNA pattern was detected within and between the two taxa.     

Defective kernel mutants of maize. I. Genetic and lethality studies

A planting of 3,919 M₁ kernels from normal ears crossed by EMS-treated pollen produced 3,461 M₁ plants and 3,172 selfed ears. These plants yielded 2,477 (72%) total heritable changes; the selfed ears yielded 2,457 (78%) recessive mutants, including 855 (27%) recessive kernel mutants and 8 (0.23%) viable dominant mutants. The ratio of recessive to dominant mutants was 201:1. The average mutation frequency for four known loci was three per 3,172 genomes analyzed. The estimated total number of loci mutated was 535 and the estimated number of kernel mutant loci mutated was 285. Among the 855 kernel mutants, 432 had a nonviable embryo, and 59 germinated but had a lethal seedling. A sample of 194 of the latter two types was tested for heritability, lethality, chromosome arm location and endosperm-embryo interaction between mutant and nonmutant tissues in special hyper-hypoploid combinations produced by manipulation of B-A translocations. The selected 194 mutants were characterized and catalogued according to endosperm phenotype and investigated to determine their effects on the morphology and development of the associated embryo. The possibility of rescuing some of the lethal mutants by covering the mutant embryo with a normal endosperm was investigated. Ninety of these 194 mutants were located on 17 of the 18 chromosome arms tested. Nineteen of the located mutants were examined to determine the effect of having a normal embryo in the same kernel with a mutant endosperm, and vice versa, as compared to the expression observed in kernels with both embryo and endosperm in a mutant condition. In the first situation, for three of the 19 mutants, the mutant endosperm was less extreme (the embryo helped); for seven cases, the mutant endosperm was more extreme (the embryo hindered); and for nine cases, there was no change. In the reverse situation, for four cases the normal endosperm helped the mutant embryo; for 14 cases there was no change and one case was inconclusive.     

Identification of a single nucleotide deletion causing frameshift mutation in OsDFR2A in a genic male sterile mutant of rice and its possible application to F1 hybrid breeding

Stable genic male sterility (GMS), which is not influenced by environmental factors, has not been used for F₁ hybrid seed production because male-sterile inbred lines cannot be developed and male-sterile plants must be selected from segregating populations every time. However, the stability of male sterility may provide a reliable system for F₁ seed production without contamination of selfed seeds. A genic male-sterile mutant in rice (Oryza sativa L.), C204, which was selected from progeny of the cultivar ‘Koshihikari’ irradiated by gamma rays, has shorter and whiter anthers than those of ‘Koshihikari’ and has no pollen grains. Segregation analysis of C204 suggested the male sterility of this mutant to be controlled by a recessive allele of a single gene. Linkage analysis of a mutated gene responsible for the male sterility revealed the gene to be in a region of ca. 75 kb on the long arm of chromosome 9. The nine genes predicted in the 75-kb region were sequenced, and compared with the published Nipponbare genome sequences. A single-base deletion was found in the first exon of a C204 allele of Os09g0493500, which encodes an NAD-dependent epimerase/dehydratase family protein, resulting in a frameshift causing a premature stop codon. A dot-blot single nucleotide polymorphism marker for detection of the single-base deletion in Os09g0493500 was developed. We herein propose an F₁ hybrid seed production system using stable GMS with a simple selection method of GMS plants.     

Genetics and cytology of a new genic male-sterile soybean [Glycine max (L.) Merr.]

 Genetic and cytological studies were conducted with a new male-sterile, female-fertile soybean [Glycine max (L.) Merr.] mutant. This mutant was completely male sterile and was inherited as a single-recessive gene. No differences in female or male gamete transmission of the recessive allele were observed between reciprocal cross-pollinations in the F₁ or F₂ generations. This mutant was not allelic to any previously identified soybean genic male-sterile mutants: ms1, ms2, ms3, ms4, ms5, or ms6. No linkage was detected between sterility and flower color (W1 locus), or between sterility and pubescence color (T1 locus). Light microscopic and cytological observations of microsporogenesis in fertile and sterile anthers were conducted. The structure of microspore mother cells (MMC) in male-sterile plants was identical to the MMCs in male-fertile plants. Enzyme extraction analyses showed that there was no callase activity in male-sterile anthers, and this suggests that sterility was caused by retention of the callose walls, which normally are degraded around tetrads at the late tetrad stage. The tapetum from male-sterile anthers also showed abnormalities at the tetrad stage and later stages, which were expressed by an unusual formation of vacuoles, and by accumulation of densely staining material. At maturity, anthers from sterile plants were devoid of pollen grains. Received: 13 May 1996 / Revision accepted: 19 August 1996     

Somaclonal variation in plants regenerated from cultures of soybean

Plants were regenerated from embryogenic and organogenic cultures derived from immature embryos of nine soybean (Glycine max L. Merr.) genotypes and extensive qualitative variation was noted in different regenerated families. Three lethal sectoral albinos were seen in the regenerated plants (R₀). Variants observed in later selfed generations included twin seeds, multiple shoots, dwarfs, abnormal leaf morphology, abnormal leaflet number, wrinkled leaves, chlorophyll deficiency, partial sterility and complete sterility. The frequency of possible mutations ranged from 0 to 4% in R plants as determined by studies of corresponding R₁, R₂, R₃ and R₄ families. No significant differences were seen in the frequencies of possible mutations for embryogenic as compared to organogenic culture derived plants. Chlorophyll deficiency, sterility and wrinkled leaf traits were followed in two or more generations and showed that these traits were inherited stably. The known traits of this nature are controlled by single recessive nuclear genes. Other traits occurred more randomly and not in all generations. The genetic basis of the random variation is not known at the present time. This study indicates that heritable somaclonal variation does occur in tissue culture derived plants of soybean.Abbreviations R₀ Original regenerated plant - R₁ Selfed seeds of R₀ plants - R₂ Selfed seeds of R₁ plants - R₃ Selfed seeds of R₂ plants This research was supported by funds from the Illinois Agricultural Experiment Station and Agrigenetics Inc.     

S allele discrimination in styles of Petunia hybrida bearing stylar-conditioned pseudo-self-compatibility

Summary A cross between a 0% pseudo-self-compatible (PSC) plant (S_3.3) and a 100% PSC plant (S_1.1) yielded an F₁ population which, when selfed, produced a high mean seed set which was not significantly different than that produced when the F₁ was backcross pollinated by the 100% PSC parent. Backcross pollinating the F₁ with the 0% PSC parent yielded no seed. No S_3.3 plants were recovered in the F₂ populations, indicating that pollen tubes containing the S₃ allele were inhibited during pollen tube growth of the selfed F₁ plants. Apparently stylar-conditioned PSC does not remove all discriminatory power from these petunia styles. Crossing the F₁ (S_1.3) with an self-incompatible (SI) plant (S_2.2) produced plants which were used for computation of a standard linkage test. An approximate map distance of 28 units was found between the S specificity locus and the major gene(s) which influenced its expression. Other generalized PSC modifying genes apparantly were not linked with the S locus.Scientific Journal Series Paper Number 10,606 of the Minnesota Agricultural Experiment Station     

Genetic analysis and complementation studies on a number of mutant supernodulating soybean lines

Genetic analysis was done on a number of nitrate tolerant supernodulating (nts) mutant soybean lines. These lines are altered in the autoregulation response, and each was isolated as a separate mutational event following chemical mutagenesis. Crosses were made betweennts lines on a diallel pattern, and each was also crossed usingnts lines as female parent, to wild-type nodulation cultivars. F₁ and F₂ data were analysed from each cross for nodulation type and number. No complementation was noted wherents lines were intercrossed, suggesting that in each line the same gene was affected. Wherents lines were crossed with wild-type cultivars all the F₁ progeny were wild-type, confirming that thenls gene is recessive and, with one exception,nts 1116, all of the F₂ progeny segregated into a 3:1 wild-type to supernodulating phenotype, indicating that a single gene is involved. The hypernodulating linents 1116 gave a 1:1 ratio in its F₂ progeny when crossed with othernts lines. This line behaved as a dominant in the latter crosses. No wild-type segregants were recovered, therefore again no complementation look place. This line may be a leaky mutant with partial autoregulation as its segregation ratios do not fall into any of the obvious patterns.     

Nuclear DNA content in differentiated tissues of sunflower (Helianthus annuus L.)

Summary Scanning cytophotometry following Feulgen-staining was used to determine nuclear DNA content in many differentiated tissues of nine cultivars, hybrids or selfed lines ofHelianthus annuus. Apart from such ephemeral tissues as endosperm and anther tapetum, it was found that tissue differentiation in sunflower occurs in the diploid condition, cells being arrested in the DNA presynthetic phase (G₁). In certain cases, however, the nuclear DNA content of differentiated G₁ cells does not exactly match the 2C DNA content found in meristematic cells, but may be either higher or lower. In endosperm and anther tapetum cells, nuclear DNA content may be as high as 24 C and 32 C, respectively. Cytological and autoradiographic analyses after³H-thymidine incorporation reveal that polyploidy in the tapetal cells is due to chromosome endoreduplication. No detectable difference between male-fertile and male-sterile plants exists as far as occurrence and level of cell polyploidy are concerned. The results are discussed in the context of previous investigations on the nuclear condition of differentiatedHelianthus annuus tissue.     

Segregation for endosperm lysine in F2, F3 and F4 progeny from a cross of in vitro-selected and unselected cultivar of rice

Summary Lysine is a limiting amino acid for optimal nutritional quality in rice grain. In vitro selections using inhibitory levels of lysine plus threonine or s-aminoethylcysteine allow the predictable recovery of variants with elevated levels of lysine and protein. These methods may generate useful starting germplasm for plant breeders. This study was conducted to define the genetics of lysine mutants in progeny from crosses of mutants derived from cells cultured in vitro in the presence of inhibitory levels of lysine plus threonine and s-(2-aminoethyl)-cysteine. In vitro selections produce a wide range of mutants, including endosperm mutants with elevated lysine and protein levels as well as mutants for high and low seed weights. Mutants were analyzed for lysine content by the endosperm half-seed method in which the halves without the embryo were ground and acid hydrolyzed for amino acid determinations. The halves with the embryos were preserved for later germination. In two different F₂ populations derived from a cross of a selected mutant x M-101, a parental marker, there was an inverse relationship between seed weight and percent lysine in endosperm protein (R² 0.52 and 0.56). The F₂ segregation patterns show that elevated lysine is inherited as a recessive gene and that increased lysine is correlated with decreased seed size. F₃ and F₄ data provide evidence for the transmission of high lysine genes to advanced germplasm in rice. This work supports our earlier conclusions that high lysine phenotypes can be recovered predictably from in vitro selections. The elevated lysine phenotypes are frequently, but not exclusively, associated with opaque seed. Some segregants from crosses produced increased lysine in plants with near normal seed weight and good fertility.Research done under the auspices of the USDA, ARS, Plant Sciences Institute, Plant Molecular Biology Laboratory, Beltsville, MD 20705, USA     

A new source of cytoplasmic male sterility in maize induced by the nuclear gene,iojap

Summary Cytoplasmic male sterility (cms) was found in plants derived from the F₂ progeny of fertile, normal cytoplasm plants of the inbred R181 pollinated with a genetic stock carrying the recessive nuclear gene, iojap. The male sterile plants were maintained by back-crossing with the inbred W182BN which maintains all known sources of cytoplasmic male sterility. The new male sterile progeny were found to exhibit stable male sterility under field conditions in two environments. However, they were partially fertile in the hot, dry summer of 1983 at Aurora, NY. It was found that these lines were restored by lines that characteristically restore cms S group cytoplasms. Pollen phenotype studies indicated that the restoration was gametophytic in nature, also characteristic of the cms S group. Agarose gel electrophoresis of undigested mitochondrial DNA (mtDNA) from these steriles indicated that these lines have the S-1 and S-2 episomes characteristic of the cms S group. Restriction endonuclease digest patterns of mtDNA from these sterile lines digested with BamH I indicated that these steriles fit into the CA subgroup of the cms S group. The new source of cms has been designated cms Ij-1.     

Location of the recessive gene ym (yellow margin) on chromosome 12 of diploid Solatium tuberosum by means of trisomic analysis

Summary Ten out of twelve primary trisomics of dip-loid S. tuberosum were crossed as females with a recessive mutant for yellow margin (ym ym) obtained from S. phureja. All primary trisomics used proved to be homozygous dominant. Trisomic plants from all ten F₁'s were backcrossed with the mutant and trisomics from eight F₁'s were crossed also with a disomic heterozygous f₁ plant from triple 10 X mutant.In both BC₁ and half sib progeny of each trisomic type the mutant plants were easily identified because of their typical small roundish leaflets with yellow or reddish margins. The observed segregation ratios for normal to mutant were tested against the expected non-critical ratios and against various expected critical ratios.From the results of these tests it is concluded that the gene ym is located on chromosome 12 of the potato. A hypothesis of linkage between ym and a gene l _x for lethality is put forward. It is concluded that l _x is not identical with a previously detected recessive gene l ₂ which is responsible for yellow cotyledons and lethality.     

Development of carrot inbreds with resistance to carrot fly using a single seed descent programme

Two carrot cultivars, ‘Sytan’ and ‘Long Chantenay’, representing commercially important carrot types and selected for their partial resistance to the carrot fly (Psila rosae) were crossed as the basis for a single seed descent programme. The resulting F₁ progeny were mass pollinated to produce an F₂ generation and approximately 2000 plants were raised from this segregating family in the glasshouse in 1981. By careful choice of sowing date and glasshouse temperatures it was possible to stimulate the plants to flower within 10 months. Individual king umbels were enclosed within bags and pollinated with blowflies. Resulting seed was sown in pots in the following August and the process of seed production repeated in a 12 month cycle. Each inbred line was selfed in this way over three generations until the F₅ stage. Stocks of seed were then multiplied. A total of 753 inbreds were produced by 1987. The vigour of each inbred was evaluated in glasshouse tests and the level of chlorogenic acid was determined by a fluorescence technique. The most vigorous lines with the lowest levels of chlorogenic acid were tested in field experiments against carrot fly at Wellesbourne. Nine inbreds with promising agronomic quality and moderate resistance to carrot fly were selected and seeded. These nine lines were submitted to seed companies with the aim of developing new cultivars of carrot.     

Genetic and physiological characterization of Flaveria linearis plants having a reduced activity of cytosolic fructose-1.6-bisphosphatase

We investigated the genetic control of cytosolic fructose-1,6-bisphosphatase (cytFBPase) activity, and the relationships between sucrose synthesis capacity and photosynthesis, growth, flowering and whole-plant carbon partitioning in Flaveria linearis Lag. F₁; F₂, and selfed lines generated from plants with low or high cytFBPase activity were used. CytFBPase activity was controlled by one gene and inherited co-dominantly, giving three classes of activity (low, intermediate and high). Reversed O₂ sensitivity of photosynthesis, which indicates an end-product limitation on photosynthesis, was controlled by one gene and co-segregated with low cytFBPase activity. A low activity of cytFBPase decreased the growth rate. A recessive day-neutral flowering trait in Flaveria linearis did not co-segregate with cytFBPase activity. Plants with low cytFBPase activity had an increased shoot-to-root ratio, and flowering caused an additional shift in carbon partitioning to shoots only in plants with low cytFBPase activity. These data indicate that altering sucrose synthesis can affect photosynthesis and plant growth and development.     

Nuclear-cytoplasmic interaction in chlorophyll-deficient soybean,Glycine max (Fabaceae)

In higher plants, plastids and mitochondria are the predominant carriers of extrachromosomal genetic information. There is interplay between the plastids, the mitochondria, and the nuclear genome. In soybean, Glycine max (L.) Merr., both nuclearly and maternally inherited chlorophyll-deficient mutants have been described. Conditional lethality previously was reported in soybean when maternally inherited chlorophyll-deficient mutant (Genetic Type T275) was crossed with nuclearly inherited yellow foliar malate dehydrogenase null mutants (Genetic Types T253 and T323). Our objective was to test for conditional lethality when maternally inherited yellow foliar mutants T278, T314, T315, T316, T319, and T320 were female parents and nuclearly inherited yellow foliar malate dehydrogenase null mutants T253 and T323 were male parents. Our results indicated conditional lethality in the F₂ generation when any of the six cytoplasmically inherited yellow foliar mutants were female parents and either T253 or T323 were male parents. The physiological nature of conditional lethality is not known. Data indicate a common basis in soybean for conditional lethality among the cytoplasmically inherited yellow foliar mutants when crossed with the nuclearly inherited yellow foliar malate dehydrogenase null mutants. No interactions were observed between cytoplasmically inherited or nuclearly inherited green seed embryo mutants as female parents and either T253 or T323 as male parents.     

Quantitative genetic studies of A/B zeins using a new model to test non-allelic interactions

A genetic model developed by Bogyo et al. (1988) for quantitatively inherited triploid endosperm characters (an extension of the well-known Mather-Jinks model) is not well-suited for estimating epistatic interaction effects because it requires the assumption that, in segregating loci, all alleles positively affecting a particular character are in one of the inbred parental lines. To better explain zein inheritance in maize, a new model was developed not relying on this assumption. This model was tested by quantitative analysis of A/B zeins, the predominant prolamin storage proteins of maize, using reversed phase high-performance liquid chromatography of two inbred lines, their reciprocal F₁ crosses, the F₂ generation, backcrosses, and reciprocal backcrosses to both parent lines. The model required epistatic components to be included for an excellent fit for most protein peaks.Scientific Paper No. 3 Program in Statistics, Washington State University, Pullman WA 99164. The mention of firm names or trade products does not imply that they are endorsed or recommended by the US Department of Agriculture over other firms or similar products not mentioned     

Genetics and ultrastructure of a cytoplasmically inherited yellow mutant in soybeans

A chimeric plant was observed in the F₂ generation of a cross between a male-sterile line and a plant introduction homozygous for a chromosome interchange in soybeans [Glycine max (L.) Merr.]. F₃ progeny of this plant included one chimera, 36 yellow plants and 16 green plants. The yellow plants, which progressively turn green, were viable and fertile in field, greenhouse and growth-chamber environments. Reciprocal cross-pollinations were made between these yellow plants and four known nuclear yellow mutant plants, between these yellow plants and sibling green plants and between these yellow plants and unrelated green plants. Segregation data from F₁ and F₂ generations indicated cytoplasmic inheritance of the newly discovered yellow phenotype. Pollinations in which reciprocal F₁ hybrid plants were used as male or female parents were made with unrelated green plants. Observations in F₁ and F₂ generations substantiated the hypothesis of cytoplasmic inheritance. No interactions have been observed between this mutant and the various nuclear backgrounds. This is the first report of a cytoplasmically inherited mutant affecting plant color in soybeans. Exchange grafts were made between cytoplasmic yellow plants and sibling green plants and between cytoplasmic yellow plants and unrelated green plants. The phenotype was controlled by the scion, indicating that graft-transmissible agents were not involved. When grown in darkness, cytoplasmic yellow plants and normal green plants accumulated the same amount of protochlorophyllide. Cytoplasmic yellow plants grown in dim light accumulated slightly less chlorophyll than did their green siblings. Electron photomicrographs showed that the prolamellar body (a structure associated with synthesis of protochlorophyllide) and chloroplast ultrastructure were normal in the cytoplasmic yellow mutant. These observations led to the hypothesis that the synchrony involved in deposition of nuclear and cytoplasmic gene products during organelle development is impaired in this cytoplasmic mutant.     

Pollen tube expression of pseudo-self-compatibility (PSC) inPetunia hybrida

Summary AnS _1.1 self-incompatible (SI) petunia plant which showed atypical seed set was found in an I₇ population. This plant showed a strong SI reaction when selfed but produced varying amounts of seed when used as the seed parent in crosses with unrelated individuals homozygous for the sameS allele. Reciprocal crosses yielded no seed indicating that the reaction was a stylar response. Self seed obtained by high temperature treatments produced 18 plants, all of which exhibited the parental characteristics, the ability to reject self pollen but accept, to varying degrees, pollen bearing the sameS allele from unrelated plants. Several petunias homozygous forS ₁, and exhibiting various levels of PSC as determined by self seed set, progeny tests and temperature treatments, were used as pollen parents. The mean seed set of these crosses produced a ranking of the pollen parents which reflected the PSC levels obtained by other methods. The behavior of the F₁ and F₂ populations suggests that the pollen discriminating ability may be a simply inherited, dominant character in these plants. The styles of these unusual petunias illustrate the participation of the pollen tube in determining PSC.Scientific Journal Series Paper Number 10.479 of the Minnesota Agricultural Experiment Station