Organization of marine phenology data in support of planning and conservation in ocean and coastal ecosystems

Among the many effects of climate change is its influence on the phenology of biota. In marine and coastal ecosystems, phenological shifts have been documented for multiple life forms; however, biological data related to marine species' phenology remain difficult to access and is under-used. We conducted an assessment of potential sources of biological data for marine species and their availability for use in phenological analyses and assessments. Our evaluations showed that data potentially related to understanding marine species' phenology are available through online resources of governmental, academic, and non-governmental organizations, but appropriate datasets are often difficult to discover and access, presenting opportunities for scientific infrastructure improvement. The developing Federal Marine Data Architecture when fully implemented will improve data flow and standardization for marine data within major federal repositories and provide an archival repository for collaborating academic and public data contributors. Another opportunity, largely untapped, is the engagement of citizen scientists in standardized collection of marine phenology data and contribution of these data to established data flows. Use of metadata with marine phenology related keywords could improve discovery and access to appropriate datasets. When data originators choose to self-publish, publication of research datasets with a digital object identifier, linked to metadata, will also improve subsequent discovery and access. Phenological changes in the marine environment will affect human economics, food systems, and recreation. No one source of data will be sufficient to understand these changes. The collective attention of marine data collectors is needed—whether with an agency, an educational institution, or a citizen scientist group—toward adopting the data management processes and standards needed to ensure availability of sufficient and useable marine data to understand marine phenology.     

Contrasting age structures in cave cricket populations: patterns and significance

Abstract.

• 1 Adaptation to life in caves, as a seasonally constant environment, is expected to affect several life history traits. In this paper we investigate the age structure and phenology of twenty-seven Dolichopodu cave cricket populations from artificial and natural caves subjected to different environmental regimes and to different availability of food resources.
• 2 Morphometric data clearly revealed the occurrence of different age structures and phenology, basically indicating two contrasting patterns.
• 3 In artificial caves, which have been colonized by Dolichopoda only in historical times and where food resources and climate are chiefly dependent upon surface environment, age structure was seasonal. In contrast, in most natural caves, where cricket colonization appears to be much older and stability of both climatic parameters and trophic resources is higher, age structure was diverse and aseasonal.
• 4 However, a seasonal age structure also occurs in natural caves characterized by either recent origin or by a low temperature regime. This suggests that age structure in Dolichopoda is influenced by historical factors, stability of food resources and also by environmental stress.

     

Climate change and marine plankton

Understanding how climate change will affect the planet is a key issue worldwide. Questions concerning the pace and impacts of climate change are thus central to many ecological and biogeochemical studies, and addressing the consequences of climate change is now high on the list of priorities for funding agencies. Here, we review the interactions between climate change and plankton communities, focusing on systematic changes in plankton community structure, abundance, distribution and phenology over recent decades. We examine the potential socioeconomic impacts of these plankton changes, such as the effects of bottom-up forcing on commercially exploited fish stocks (i.e. plankton as food for fish). We also consider the crucial roles that plankton might have in dictating the future pace of climate change via feedback mechanisms responding to elevated atmospheric CO(2) levels. An important message emerges from this review: ongoing plankton monitoring programmes worldwide will act as sentinels to identify future changes in marine ecosystems.     

Effects of resource availability and social aggregation on the species richness of raccoon endoparasite infracommunities

Within populations the contact rate of hosts and infectious parasites is mediated by the interactions of resource availability, host density, and host behavior. Fluctuations in host density can result in the loss or extinction of a parasite population as contact rates between parasites and susceptible individuals drop below thresholds of parasite population persistence. Less understood is how changes in resources and the behavioral ecology of host populations affect parasites. We used food provisioning to experimentally assess the effects of resource availability and of inducing host aggregation on the endoparasite community of free‐ranging raccoons. Twelve independent raccoon populations were subjected to differential resource provisioning for two years: a clumped food distribution to aggregate hosts (n = 5 populations), a dispersed food distribution to add food without aggregating hosts (n = 3), and a no food treatment (n = 4). Remote cameras indicated that aggregation sizes were three to four times greater in aggregated versus non‐aggregated populations. We considered endoparasites with direct and indirect life cycles separately and determined the best‐fit models of parasite species richness in relation to host aggregation, food supplements, and host age and sex. Social aggregation had a negligible impact on the species richness of directly or indirectly transmitted parasites. However, food additions decreased the number of indirectly transmitted parasite species by 35% in the oldest age classes. These results suggest that while resource availability can influence the transmission of indirectly transmitted parasites, an examination of additional factors will be necessary to understand the role of host contact and factors that shape the community structure of endoparasites in natural environments.     

Drought reshuffles plant phenology and reduces the foraging benefit of green‐wave surfing for a migratory ungulate

To increase resource gain, many herbivores pace their migration with the flush of nutritious plant green‐up that progresses across the landscape (termed “green‐wave surfing”). Despite concerns about the effects of climate change on migratory species and the critical role of plant phenology in mediating the ability of ungulates to surf, little is known about how drought shapes the green wave and influences the foraging benefits of migration. With a 19 year dataset on drought and plant phenology across 99 unique migratory routes of mule deer (Odocoileus hemionus) in western Wyoming, United States, we show that drought shortened the duration of spring green‐up by approximately twofold (2.5 weeks) and resulted in less sequential green‐up along migratory routes. We investigated the possibility that some routes were buffered from the effects of drought (i.e., routes that maintained long green‐up duration irrespective of drought intensity). We found no evidence of drought‐buffered routes. Instead, routes with the longest green‐up in non‐drought years also were the most affected by drought. Despite phenological changes along the migratory route, mule deer closely followed drought‐altered green waves during migration. Migrating deer did not experience a trophic mismatch with the green wave during drought. Instead, the shorter window of green‐up caused by drought reduced the opportunity to accumulate forage resources during rapid spring migrations. Our work highlights the synchronization of phenological events as an important mechanism by which climate change can negatively affect migratory species by reducing the temporal availability of key food resources. For migratory herbivores, climate change poses a new and growing threat by altering resource phenology and diminishing the foraging benefit of migration.     

Which are the phenologically flexible species? A case study with common passerine birds

One of the most consensual ecological effects of the current climate warming is the alteration of the environmental timing of ecosystems. Phenological shifts, at different levels of food webs, are predicted to have major effects on species assemblages. Indeed it is unlikely that all species should be able to respond to the phenological shifts of their environment evenly. Yet questions remain about the specific traits that predict the ability of a species to track the temporal fluctuations of its environment. In this study, we use data from the French Constant Effort Site ringing program over a 20 years period (1989–2008) to estimate the ability of 20 common passerine species to adjust their breeding phenology to spring temperature variations. We show that the sensitivity of species breeding phenology to climate relates to species mean migration distance, species’ thermal and habitat niche breadth and brain mass. Species with the broadest ecological and thermal niches, the shortest mean migration distances and the largest brains were most able to adjust their breeding phenology to temperature variations. Our results thus identify long distance migrants and ecological specialists as species that could most suffer from the future expected climate change and suggests phenological adjustment as one possible mechanism underlying the replacement of specialist species by more generalist ones, the so called functional biotic homogenization.     

Exploring the drivers of variation in trophic mismatches: A systematic review of long‐term avian studies

1. Many organisms reproduce in seasonal environments, where selection on timing of reproduction is particularly strong as consumers need to synchronize reproduction with the peaked occurrence of their food. When a consumer species changes its phenology at a slower rate than its resources, this may induce a trophic mismatch, that is, offspring growing up after the peak in food availability, potentially leading to reductions in growth and survival. However, there is large variation in the degree of trophic mismatches as well as in its effects on reproductive output.
2. Here, we explore the potential causes for variation in the strength of trophic mismatches in published studies of birds. Specifically, we ask whether the changes in the degree of mismatch that have occurred over time can be explained by a bird''s (a) breeding latitude, (b) migration distance, and/or (c) life‐history traits.
3. We found that none of these three factors explain changes in the degree of mismatch over time. Nevertheless, food phenology did advance faster at more northerly latitudes, while shifts in bird phenology did not show a trend with latitude.
4. We argue that the lack of support in our results is attributable to the large variation in the metrics used to describe timing of food availability. We propose a pathway to improve the quantification of trophic mismatches, guided by a more rigorous understanding of links between consumers and their resources.

     

Basin‐scale phenology and effects of climate variability on global timing of initial seaward migration of Atlantic salmon (Salmo salar)

Migrations between different habitats are key events in the lives of many organisms. Such movements involve annually recurring travel over long distances usually triggered by seasonal changes in the environment. Often, the migration is associated with travel to or from reproduction areas to regions of growth. Young anadromous Atlantic salmon (Salmo salar) emigrate from freshwater nursery areas during spring and early summer to feed and grow in the North Atlantic Ocean. The transition from the freshwater (‘parr’) stage to the migratory stage where they descend streams and enter salt water (‘smolt’) is characterized by morphological, physiological and behavioural changes where the timing of this parr‐smolt transition is cued by photoperiod and water temperature. Environmental conditions in the freshwater habitat control the downstream migration and contribute to within‐ and among‐river variation in migratory timing. Moreover, the timing of the freshwater emigration has likely evolved to meet environmental conditions in the ocean as these affect growth and survival of the post‐smolts. Using generalized additive mixed‐effects modelling, we analysed spatio‐temporal variations in the dates of downstream smolt migration in 67 rivers throughout the North Atlantic during the last five decades and found that migrations were earlier in populations in the east than the west. After accounting for this spatial effect, the initiation of the downstream migration among rivers was positively associated with freshwater temperatures, up to about 10 °C and levelling off at higher values, and with sea‐surface temperatures. Earlier migration occurred when river discharge levels were low but increasing. On average, the initiation of the smolt seaward migration has occurred 2.5 days earlier per decade throughout the basin of the North Atlantic. This shift in phenology matches changes in air, river, and ocean temperatures, suggesting that Atlantic salmon emigration is responding to the current global climate changes.     

Movement tactics of a mobile predator in a meta‐ecosystem with fluctuating resources: the arctic fox in the High Arctic

Animal movement is a fundamental process shaping ecosystems at multiple levels, from the fate of individuals to global patterns of biodiversity. The spatio‐temporal dynamic of food resources is a major driver of animal movement and generates patterns ranging from range residency to migration and nomadism. Arctic tundra predators face a strongly fluctuating environment marked by cyclic microtine populations, high seasonality, and the potential availability of sea ice, which gives access to marine resources in winter. This type of relatively poor and highly variable environment can promote long‐distance movements and resource tracking in mobile species. Here, we investigated the winter movements of the arctic fox, a major tundra predator often described as a seasonal migrant or nomad. We used six years of Argos satellite telemetry data collected on 66 adults from Bylot Island (Nunavut, Canada) tracked during the sea ice period. We hypothesized that long‐distance movements would be influenced by spatio‐temporal changes in resource availability and individual characteristics. Despite strong annual and seasonal changes in resource abundance and distribution, we found that a majority of individuals remained resident, especially those located in an area characterized by highly predictable pulse resources (goose nesting colony) and abundant cached food items (eggs). Foxes compensated terrestrial food shortage by commuting to the sea ice rather than using long‐distance tracking or moving completely onto the sea ice for winter. Individual characteristics also influenced movement patterns: age positively influenced the propensity to engage in nomadism, suggesting older foxes may be driven out of their territories. Our results show how these mammalian predators can adjust their movement patterns to favor range residency despite strong spatio‐temporal fluctuations in food resources. Understanding the movement responses of predators to prey dynamics helps identifying the scales at which they work, which is a critical aspect of the functioning and connectivity among meta‐ecosystems.     

Leadership, social learning, and the maintenance (or collapse) of migratory populations

Long-distance animal migrations are complex, population-level phenomena that emerge in seasonal landscapes as a result of the interplay between environmental influences (e.g., resources, predators) and social interactions among conspecifics. When landscapes change with respect to phenology or connectivity, the dynamics of migratory species can abruptly shift, in many cases leading to a cessation of migration and dramatic decreases in population size. We develop a difference equation modeling framework to explore how the social transfer of knowledge from informed “leader” individuals enhances the performance of seasonally migratory versus resident populations. The model permits a wide range of population-level behaviors including alternative stable states, partial migration equilibria, and complex dynamics, but we focus our efforts on investigations of migration collapse mediated by a lack of informed leaders that can arise from changes in landscape structure, survivorship, reproduction, and/or social learning. Migration collapse is a hysteretic phenomenon in this model and results either in extinction of the population or purely resident behavior. The hysteretic nature of migration failure, which hinges on cultural transmission of knowledge, highlights a potentially critical role for behavior and social learning in aspects of spatial ecology and conservation biology.     

Shifts in phenology due to global climate change: the need for a yardstick

Climate change has led to shifts in phenology in many species distributed widely across taxonomic groups. It is, however, unclear how we should interpret these shifts without some sort of a yardstick: a measure that will reflect how much a species should be shifting to match the change in its environment caused by climate change. Here, we assume that the shift in the phenology of a species' food abundance is, by a first approximation, an appropriate yardstick. We review the few examples that are available, ranging from birds to marine plankton. In almost all of these examples, the phenology of the focal species shifts either too little (five out of 11) or too much (three out of 11) compared to the yardstick. Thus, many species are becoming mistimed due to climate change. We urge researchers with long-term datasets on phenology to link their data with those that may serve as a yardstick, because documentation of the incidence of climate change-induced mistiming is crucial in assessing the impact of global climate change on the natural world.     

Timing and abundance as key mechanisms affecting trophic interactions in variable environments

Climatic changes are disrupting otherwise tight trophic interactions between predator and prey. Most of the earlier studies have primarily focused on the temporal dimension of the relationship in the framework of the match–mismatch hypothesis. This hypothesis predicts that predator's recruitment will be high if the peak of the prey availability temporally matches the most energy‐demanding period of the predators breeding phenology. However, the match–mismatch hypothesis ignores the level of food abundance while this can compensate small mismatches. Using a novel time‐series model explicitly quantifying both the timing and the abundance component for trophic relationships, we here show that timing and abundance of food affect recruitment differently in a marine (cod/zooplankton), a marine–terrestrial (puffin/herring) and a terrestrial (sheep/vegetation) ecosystem. The quantification of the combined effect of abundance and timing of prey on predator dynamics enables us to come closer to the mechanisms by which environment variability may affect ecological systems.     

Shorter migration distances associated with higher winter temperatures suggest a mechanism for advancing nesting phenology of American kestrels Falco sparverius

Global climate change has affected avian migration patterns and nesting phenology. Changes in one phase of a bird's cycle will most likely affect other stages, but few studies focus simultaneously on multiple life‐history events. We used western North American ringing records and Christmas Bird Counts to examine whether changes in migration patterns were concordant with advancing American kestrel Falco sparverius nesting phenology. Consistent with previous findings, male kestrels migrated shorter distances than female kestrels, and kestrels nesting in southern latitudes migrated shorter distances than kestrels nesting in more northern areas. In addition, kestrel migration distance decreased significantly from 1960 to 2009 and was negatively associated with winter minimum temperatures. Christmas Birds Counts from the same time period showed increasing indices of overwintering kestrel abundance in northern states (Washington, Idaho, and Utah), where winter minimum temperatures have increased significantly, and concomitant decreases in southern states (California and Arizona). Finally, changes in nesting phenology of kestrels in southwestern Idaho were best explained by warmer winters, not springs. Warmer winters may decrease energetic demands on migrants by allowing for shorter migration distances, decreasing thermoregulatory costs, or both. Decreased energy demands during winter may allow birds to gain resources necessary for reproduction earlier in the nesting season. Higher winter temperatures that decrease (former) constraints on early nesting may be a particularly important mechanism leading to advancing nesting phenology for species with strong seasonal declines in fecundity or intense early season competition for high‐quality nesting areas.     

Tradeoffs between food abundance and predation danger in spatial usage of a stopover site by western sandpipers, Calidris mauri

Foragers use a variety of anti-predator behaviours to increase their safety from predators. While foraging, animals should alter usage within or between sites to balance the benefits of feeding with the costs of predation. I tested how the distribution of food abundance and predation danger interacts to explain spatial usage (i.e. distance from shore) by migratory western sandpipers ( Calidris mauri ) at Boundary Bay, British Columbia, Canada, during northward and southward migrations. At Boundary Bay there are opposing spatial gradients in the distribution of food abundance and safety from predators. Predation danger for sandpipers is high near the shoreline where there is approach cover for falcons and decreases with distance from shore. Food abundance for sandpipers declines as distance from the shoreline increases. Food and danger attributes at Boundary Bay also differ temporally, such that food abundance is higher during southward migration, and predation danger is higher during northward migration. The spatial usage by western sandpipers balances the tradeoff between the opposing spatial gradients in food and safety. For both migratory periods spatial usage of the mudflat by sandpipers is highest at distances from the shoreline where food abundance and predation danger are intermediate. During the northward migration sandpiper usage is highest between 150 and 500 m from the shoreline, and during the southward migration sandpiper usage is highest between 100 and 600 m from the shoreline. Despite temporal differences in food and danger attributes, spatial usage of the site by sandpipers does not differ between migratory periods. Understanding how the distribution of food abundance and predation danger interact to affect the within site usage by shorebirds has important implications for assessments of site quality.     

Relative Effect of Food Supplementation and Natural Resources on Female Red Deer Distribution in a Mediterranean Ecosystem

ABSTRACT Supplementary feeding is a widespread game management practice in several red deer (Cervus elaphus) populations, with important potential consequences on the biology of this species. In Mediterranean ecosystems food supplementation occurs in the rutting period, when it may change mating system characteristics. We studied the role of food supplementation relative to natural resources in the spatial distribution, aggregation, and mean harem size of females in Iberian red deer (Cervus elaphus hispanicus) during the rut. We studied 30 red deer populations of southwestern Spain, 63% of which experienced supplementary feeding. Using multivariate spatial analyses we found that food supplementation affected distribution of females in 95% of the populations in which it occurred. Green meadows present during the mating season acted as an important natural resource influencing female distribution. Additionally, the level of female aggregation and mean harem size were significantly higher in those populations in which food supplementation determined female distribution than in populations in which female distribution did not depend on supplementary feeding. Because female aggregation and mean harem size are key elements in sexual selection, supplementary feeding may constitute an important anthropogenic element with potential evolutionary implications for populations of Iberian red deer.     

空间信息技术与深远海渔业资源开发

深远海渔业资源作为人类食用的优质蛋白来源,其开发受到各渔业国家的重视。以卫星遥感、地理信息系统等为代表的空间信息技术已经在海洋渔业中得到较为广泛的应用,主要包括卫星遥感渔场环境监测及渔情分析预报、鱼类洄游路径的监测、渔船作业位置的分布与监测等。针对深远海渔业资源的捕捞开发,重点综述了空间信息技术在深远海渔业资源开发中应用的现状以及应用前景分析。     

Trophic mismatch and its effects on the growth of young in an Arctic herbivore

In highly seasonal environments, timing of breeding of organisms is typically set to coincide with the period of highest resource availability. However, breeding phenology may not change at a rate sufficient to keep up with rapid changes in the environment in the wake of climate change. The lack of synchrony between the phenology of consumers and that of their resources can lead to a phenomenon called trophic mismatch, which may have important consequences on the reproductive success of herbivores. We analyzed long‐term data (1991–2010) on climate, plant phenology and the reproduction of a long‐distance Arctic migrant, the greater snow goose (Chen caerulescens atlantica), in order to examine the effects of mismatched reproduction on the growth of young. We found that geese are only partially able to adjust their breeding phenology to compensate for annual changes in the timing of high‐quality food plants, leading to mismatches of up to 20 days between the two. The peak of nitrogen concentration in plants, an index of their nutritive quality for goslings, occurred earlier in warm springs with an early snow melt. Likewise, mismatch between hatch dates of young and date of peak nitrogen was more important in years with early snow melt. Gosling body mass and structural size at fledging was reduced when trophic mismatch was high, particularly when the difference between date of peak nitrogen concentration and hatching was >9 days. Our results support the hypothesis that trophic mismatch can negatively affect the fitness of Arctic herbivores and that this is likely to be exacerbated by rising global temperatures.     

Climate change, migratory connctivity and changes in laying date and clutch size of the pied flycatcher

We examined long-term (1943–2003) variability in laying dates and clutch sizes in a Finnish population of the pied flycatcher Ficedula hypoleuca Pallas, and analysed whether potential changes were explained by changes in climatic factors at the wintering area in Africa, at migration route or at breeding grounds. Among-year variation in both mean and skewness of laying dates increased, which for mean laying date appeared to be explained by variability of temperatures at the breeding grounds and for skewness by variable temperature trends along the migration route. Pied flycatchers bred earlier in warm springs, but despite a warming trend in pre-laying temperatures, the laying dates tended to delay. Laying dates became continuously later in relation to the phenology of the environment. Mean clutch size decreased with time when mean laying date was controlled for, but the climatic factors did not appear to explain the decrease. The advancement of spring phenology may have shifted some food sources needed for egg-laying, thus leading to later laying and smaller clutches. Variation in clutch size increased when wintering conditions were favourable so that clutch size distribution was skewed with a tail of small clutches when there had been lot of rainfall (more vegetation and insects) in the wintering area. We suggest that when ecological conditions during winter were good, the tail of small clutches represented low-quality individuals that were not able to breed after bad winters. Our analyses demonstrate that measures of spread and symmetry give different information about population level changes than means, and thus complement the understanding of the potential influences of climate change on populations.     

Factors affecting the fate of Pacific lamprey carcasses and resource transport to riparian and stream macrohabitats

1. Anadromous fish transport marine-derived nutrients to freshwaters during spawning migrations with potential implications for stream food webs. While many studies have explored the role of marine-derived nutrients instream ecosystems (particularly via Pacific salmonids [Oncorhynchus spp.]), relatively few have examined the spatial distribution and patchiness of non-salmonid fish carcasses or rates of transport to the riparian zone.
2. We radio-tagged and released 144 mature Pacific lamprey (Entosphenus tridentatus) prior to spawning and tracked the fate of post-spawn carcasses in two inland Columbia River basin streams to characterise spatial distribution of carcasses and marine-derived nutrient deposition. We found that 27 and 40% of lamprey that could be assigned a fate were moved into the riparian zone adjacent to stream segments exhibiting higher velocity conditions with larger substrates. Conversely, lamprey with instream fates were associated with depositional microhabitats and woody debris dams. Estimated carcass loading rates varied by more than an order of magnitude among habitats. These patterns probably reflect a combination of processes influencing the likelihood of carcass removal (e.g. by predators or scavengers, or stranding) and factors affecting the distribution of carcasses remaining within the stream.
3. Our results demonstrate substantial transport of lamprey carcasses across the stream-riparian ecotone and a non-random distribution of carcasses within streams, patterns which probably influence how resources enter stream and riparian food webs. More broadly, the results suggest local and landscape-scale hydrogeomorphic factors, along with species-specific traits and phenology, affect the distribution and potential roles of fish carrion in stream food webs.

     

Spatial distributions of multiple plant species affect herbivore foraging selectivity

Spatial distribution of food resources is an important factor determining herbivore foraging. Previous studies have demonstrated that clumped distribution of preferred species increases its consumption by herbivores in single‐ or two‐species systems. However, the potential impact of distribution pattern of less preferred species on foraging was ignored. In natural grasslands with high species diversity and complexity, the spatial distribution of preferred species impacts on herbivore foraging may be strongly correlated with the distribution of less preferred species. Our aims were to determine the effect of distribution of both preferred and other plant species on herbivore foraging under conditions close to a native, multi‐species foraging environment, and conceptualize the relationships between spatial distribution of food resources and herbivore consumption. We hypothesized that random distribution of non‐preferred species reduces herbivore consumption of preferred species because the dispersion of less preferred species likely disturbs herbivore foraging. We conducted an experiment using three species with five combinations of clumped and random distribution patterns. Three species Lathyrus quinquenervius, Phragmites australis and Leymus chinensis, were of high, intermediate and low preferences by sheep, respectively. Results showed that distribution of low preferred species, but not that of high preferred one, affected the consumption of preferred species. Sheep obtained higher consumption of high preferred species when low preferred species followed a clumped distribution than a random distribution. Distance between aggregations of high and low preferred species did not affect sheep foraging. It was concluded that the effects of spatial distribution of preferred species on its consumption are dependent on herbivore foraging strategy, and sheep can consume more preferred species when there is a consistent spatial pattern between preferred species and the entire food resource, and that the random dispersion of low preferred species in grassland may reduce herbivore consumption of high preferred species, thus minimizing selective grazing.