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《Evolutionary Applications》2017,10(9):935-945
Technological and methodological advances have facilitated the use of genetic data to infer census population size (Nc) in natural populations, particularly where traditional mark‐and‐recapture is challenging. The effective number of breeders (Nb) describes how many adults effectively contribute to a cohort and is often correlated with Nc. Predicting Nc from Nb or vice versa in species with overlapping generations has important implications for conservation by permitting (i) estimation of the more difficult to quantify variable and (ii) inferences of Nb/Nc relationships in related species lacking data. We quantitatively synthesized Nb/Nc relationships in three salmonid fishes where sufficient data have recently accumulated. Mixed‐effects models were analysed in which each variable was included as a dependent variable or predictor term (Nb from Nc and vice versa). Species‐dependent Nb/Nc slope estimates were significantly positive in two of three species. Variation in species slopes was likely due to varying life histories and reinforce caution when inferring Nb/Nc from taxonomically related species. Models provided maximum probable estimates for Nb and Nc for two species. However, study, population and year effects explained substantial amounts of variation (39%–57%). Consequently, prediction intervals were wide and included or were close to zero for all population sizes and species; model predictive utility was limited. Cost‐benefit trade‐offs when estimating Nb and/or Nc were also discussed using a real‐world system example. Our findings based on salmonids suggest that no short cuts currently exist when estimating population size and researchers should focus on quantifying the variable of interest or be aware of caveats when inferring the desired variable because of cost or logistics. We caution that the salmonid species examined share life‐history traits that may obscure relationships between Nb and Nc. Sufficient data on other taxa were unavailable; additional research examining Nb/Nc relationships in species with potentially relevant life‐history trait differences (e.g., differing survival curves) is needed. 相似文献
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J. Freire C. Bernárdez A. Corgos L. Fernández E. González-Gurriarán M.P. Sampedro P. Verísimo 《Aquatic Ecology》2002,36(1):41-50
Artisanal coastal invertebrate fisheries in Galicia are socio-economically important and ecologically relevant. Their management, however, has been based on models of fish population dynamics appropriate for highly mobile demersal or pelagic resources and for industrial fisheries. These management systems focus on regulating fishing effort, but in coastal ecosystems activities that change or destruct key habitats may have a greater effect on population abundance than does fishing mortality. The Golfo Artabro was analysed as a representative example of a coastal ecosystem in Galicia, and the spider crab Maja squinado used as a model of an exploited coastal invertebrate, for which shallow coastal areas are key habitats for juvenile stages. The commercial legal gillnet fishery for the spider crab harvests adults during their reproductive migrations to deep waters and in their wintering habitats. Illegal fisheries operate in shallow waters. The annual rate of exploitation is >90%, and <10% of the primiparous females reproduce effectively at least once. A simple spatially-explicit cohort model was constructed to simulate the population dynamics of spider crab females. Yield- and egg-per-recruit analyses corresponding to different exploitation regimes were performed to compare management policies directed to control the fishing effort or to protect key habitats. It was found that the protection of juvenile habitats could allow increases in yield and reproductive effort higher than in the present system, with such protection based in the control of the fishing effort of the legal fishery. Additionally, there is an urgent need for alternative research and management strategies in artisanal coastal fisheries based on the implementation of a system of territorial use rights for fishers, the integration of the fishers into assessment and management processes, and the protection of key habitats (marine reserves) as a basic tool for the regulation of the fisheries. 相似文献
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David S. Shiffman Jessica N. Elliott Catherine C. Macdonald Julia N. Wester Beth A. Polidoro Lara A. Ferry 《Conservation Science and Practice》2022,4(3):e12629
Chondrichthyan fishes are ecologically and economically important, yet many are overfished or at elevated risk of extinction. Researchers report a desire to perform policy-relevant science that can generate data in support of effective conservation and management plans, but also report a lack of clarity about how to most effectively to do that. To address this gap, we created a list of research and policy priorities for chondrichthyan species of conservation concern in US waters using a modified expert solicitation horizon scan approach. Thirty-five policy-relevant research priorities and twenty-seven policy priorities are presented here, a list which can help to guide scientists and conservationists to maximize the effectiveness of their research and policy advocacy. 相似文献
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Jacob W. Brownscombe Lucas P. Griffin Danielle Morley Alejandro Acosta John Hunt Susan K. Lowerre-Barbieri Glenn T. Crossin Sara J. Iverson Ross Boucek Aaron J. Adams Steven J. Cooke Andy J. Danylchuk 《Journal of fish biology》2020,96(2):469-479
We used acoustic telemetry to quantify permit Trachinotus falcatus habitat use and connectivity in proximity to the Florida Keys, USA, and assessed these patterns relative to current habitat and fisheries management practices. From March 2017 to June 2018, 45 permit tagged within 16 km of the lower Florida Keys were detected at stationary acoustic receivers throughout the south Florida region, the majority of which remained within the Special Permit Zone, where more extensive fisheries harvest regulations are implemented. There was a high level of connectivity between nearshore flats (i.e., <3 m water depth) and the Florida reef tract (FRT; 15–40 m water depth), with 75% of individuals detected in both habitats. These locations probably function primarily as foraging and spawning habitats, respectively. Permit occupancy on the FRT peaked during the months of March–September, with the highest number of individuals occurring there in April and May. Specific sites on the FRT were identified as potentially important spawning locations, as they attracted a high proportion of individuals that exhibited frequent visits with high residency durations. There were also significant positive relationships between seasonal habitat-use metrics on the FRT and an empirical permit gonadosomatic index. Large aggregations of permit at spawning sites on the FRT are potentially vulnerable to the effects of fishing (including predation during catch and release) at a critical point in their life cycle. These data on permit space use and movement, coupled with knowledge of stressors on their ecology, provide insights for implementing science-based strategic management plans. 相似文献
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The world faces a global fishing crisis. Wild marine fisheries comprise nearly 15% of all animal protein in the human diet, but, according to the U.N. Food and Agriculture Organization, nearly 60% of all commercially important marine fish stocks are overexploited, recovering, or depleted (FAO 2012 ; Fig. 1 ). Some authors have suggested that the large population sizes of harvested marine fish make even collapsed populations resistant to the loss of genetic variation by genetic drift (e.g. Beverton 1990 ). In contrast, others have argued that the loss of alleles because of overfishing may actually be more dramatic in large populations than in small ones (Ryman et al. 1995). In this issue, Pinsky & Palumbi (2014) report that overfished populations have approximately 2% lower heterozygosity and 12% lower allelic richness than populations that are not overfished. They also performed simulations which suggest that their estimates likely underestimate the actual loss of rare alleles by a factor of three or four. This important paper shows that the harvesting of marine fish can have genetic effects that threaten the long‐term sustainability of this valuable resource. 相似文献
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Gustavo A. Castellanos-Galindo Pilar Herrón Andrés F. Navia Hollie Booth 《Conservation Science and Practice》2021,3(7):e428
Sharks are one of the most threatened marine animals, with fishing identified as the prime human activity responsible for population declines. The tropical eastern Pacific, a biogeographic region spanning the coastal areas from Mexico to Peru including the Colombian Pacific coast and the Galapagos archipelago, forms critical habitat and migratory routes for sharks and other marine megafauna. The Colombian government recently announced a total (blanket) ban on all forms of shark fishing in the country, including artisanal and industrial. Prohibiting shark fisheries in Colombia could drive fishing and trade under-ground, fueling criminality, and marginalization. This will not only undermine recent efforts of local communities and researchers to manage small-scale fisheries, but will criminalize a key source of income for a historically marginalized part of Colombian society. To be effective and ethical, this government decision needs to be rethought incorporating a more holistic management strategy consented among different stakeholder groups. 相似文献
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Andrew T. Taylor Thomas Hafen Colt T. Holley Alin Gonzlez James M. Long 《Ecology and evolution》2020,10(2):705-717
Leveraging existing presence records and geospatial datasets, species distribution modeling has been widely applied to informing species conservation and restoration efforts. Maxent is one of the most popular modeling algorithms, yet recent research has demonstrated Maxent models are vulnerable to prediction errors related to spatial sampling bias and model complexity. Despite elevated rates of biodiversity imperilment in stream ecosystems, the application of Maxent models to stream networks has lagged, as has the availability of tools to address potential sources of error and calculate model evaluation metrics when modeling in nonraster environments (such as stream networks). Herein, we use Maxent and customized R code to estimate the potential distribution of paddlefish (Polyodon spathula) at a stream‐segment level within the Arkansas River basin, USA, while accounting for potential spatial sampling bias and model complexity. Filtering the presence data appeared to adequately remove an eastward, large‐river sampling bias that was evident within the unfiltered presence dataset. In particular, our novel riverscape filter provided a repeatable means of obtaining a relatively even coverage of presence data among watersheds and streams of varying sizes. The greatest differences in estimated distributions were observed among models constructed with default versus AICC‐selected parameterization. Although all models had similarly high performance and evaluation metrics, the AICC‐selected models were more inclusive of westward‐situated and smaller, headwater streams. Overall, our results solidified the importance of accounting for model complexity and spatial sampling bias in SDMs constructed within stream networks and provided a roadmap for future paddlefish restoration efforts in the study area. 相似文献
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Effects of marine reserve characteristics on the protection of fish populations: a meta-analysis 总被引：5，自引：0，他引：5
Meta-analyses of published data for 19 marine reserves reveal that marine protected areas enhance species richness consistently, but their effect on fish abundance is more variable. Overall, there was a slight (11%) but significant increase in fish species number inside marine reserves, with all reserves sharing a common effect. There was a substantial but non-significant increase in overall fish abundance inside marine reserves compared to adjacent, non-reserve areas. When only species that are the target of fisheries were considered, fish abundance was significantly higher (by 28%) within reserve boundaries. Marine reserves vary significantly in the extent and direction of their response. This variability in relative abundance was not attributable to differences in survey methodology among studies, nor correlated with reserve characteristics such as reserve area, years since protection, latitude nor species diversity. The effectiveness of marine reserves in enhancing fish abundance may be largely related to the intensity of exploitation outside reserve boundaries and to the composition of the fish community within boundaries. It is recommended that studies of marine reserve effectiveness should routinely report fishing intensity, effectiveness of enforcement and habitat characteristics. 相似文献
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Jonathan A. Anticamara Dirk Zeller Amanda C. J. Vincent 《Diversity & distributions》2010,16(4):529-536
Aim The objective of this study was to investigate the influence of protection duration (years of fishing closure) and location (distance from shore) on reef fish diversity. Location Danajon Double Barrier Reef, Bohol, Philippines. Methods Reef fish abundance and size structure, by species, were obtained monthly using replicated underwater visual belt transects (n = 8; 70 × 5‐m belt transects) over 3 years (2002–2005) at eight sites that included six marine reserves and two unprotected reef areas. We analysed species accumulation curves, diversity indices and abundance–biomass comparison (ABC) curves within and across the study sites to assess the influence of protection duration and location. Results Analyses showed that longer protection duration impacted reef fish diversity at both inshore and offshore sites by shifting ABC curves from higher abundance than biomass curves at fished sites to higher biomass than abundance curves at most of the protected sites. Protection duration did not significantly influence either the rate of species accumulation within sites or the 12 diversity indices measured across the study sites. The offshore sites consistently showed higher rates of species accumulation and diversity indices values than inshore sites with similar protection duration. One protected offshore young marine reserve site that has been assessed as the least well‐managed showed patterns more consistent with the fished sites. Main conclusions Analyses showed that protection duration mainly impacted diversity by increasing the dominance of large‐bodied species and enhancing total biomass. Besides protection duration, reserve location influenced species accumulation curves and diversity indices. 相似文献
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DNA barcoding methodologies are being increasingly applied not only for scientific purposes but also for diverse real-life uses. Fisheries assessment is a potential niche for DNA barcoding, which serves for species authentication and may also be used for estimating within-population genetic diversity of exploited fish. Analysis of single-sequence barcodes has been proposed as a shortcut for measuring diversity in addition to the original purpose of species identification. Here we explore the relative utility of different mitochondrial sequences (12S rDNA, COI, cyt b, and D-Loop) for application as barcodes in fisheries sciences, using as case studies two marine and two freshwater catches of contrasting diversity levels. Ambiguous catch identification from COI and cyt b was observed. In some cases this could be attributed to duplicated names in databases, but in others it could be due to mitochondrial introgression between closely related species that may obscure species assignation from mtDNA. This last problem could be solved using a combination of mitochondrial and nuclear genes. We suggest to simultaneously analyze one conserved and one more polymorphic gene to identify species and assess diversity in fish catches. 相似文献
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Matthew R. Baker Neala W. Kendall Trevor A. Branch Daniel E. Schindler Thomas P. Quinn 《Evolutionary Applications》2011,4(3):429-443
Fisheries often exert selective pressures through elevated mortality on a nonrandom component of exploited stocks. Selective removal of individuals will alter the composition of a given population, with potential consequences for its size structure, stability and evolution. Gillnets are known to harvest fish according to size. It is not known, however, whether delayed mortality due to disentanglement from gillnets exerts selective pressures that reinforce or counteract harvest selection. We examined gillnet disentanglement in exploited populations of sockeye salmon (Oncorhynchus nerka) in Bristol Bay, Alaska, to characterize the length distribution of fish that disentangle from gillnets and determine whether nonretention mortality reinforces harvest selection and exerts common pressures according to sex and age. We also evaluated discrete spawning populations to determine whether nonretention affects populations with different morphologies in distinct ways. In aggregate, nonretention mortality in fish that disentangle from gillnets counters harvest selection but with different effects by sex and age. At the level of individual spawning populations, nonretention mortality may exert stabilizing, disruptive, or directional selection depending on the size distribution of a given population. Our analyses suggest nonretention mortality exerts significant selective pressures and should be explicitly included in analyses of fishery‐induced selection. 相似文献
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Identifying fish stock structure is fundamental to pinpoint stocks that might contribute colonizers to overfished stocks. However, a stock's potential to contribute to rebuilding hinges on demographic connectivity, a challenging parameter to measure. With genomics as a new tool, fisheries managers can detect signatures of natural selection and thus identify fishing areas likely to contribute evolutionarily compatible colonizers to an overfished area (i.e. colonizers that are not at a fitness disadvantage in the overfished area and able to reproduce at optimal rates). Identifying evolutionarily compatible stocks would help narrow the focus on establishing demographic connectivity where it matters. Here, we genotype 4723 SNPs in 616 orange roughy (Hoplostethus atlanticus) across five fishing areas off the Tasmanian coast in Australia. We ask whether these areas form a single genetic unit, and test for signatures of local adaptation. Results from amova , structure , discriminant analysis of principal components, bayesass and isolation by distance suggest that sampled locations are subjected to geneflow amounts that are above what is needed to establish ‘drift connectivity’. However, it remains unclear whether there is a single panmictic population or several highly connected populations. Most importantly, we did not find any evidence of local adaptation, suggesting that the examined orange roughy stocks are evolutionarily compatible. The data have helped test an assumption of the orange roughy management programme and to formulate hypotheses regarding stock demographic connectivity. Overall, our results demonstrate the potential of genomics to inform fisheries management, even when evidence for stock structure is sparse. 相似文献
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Kathleen G. O'Malley Dave P. Jacobson Ryon Kurth Allen J. Dill Michael A. Banks 《Evolutionary Applications》2013,6(8):1184-1194
Neutral genetic markers are routinely used to define distinct units within species that warrant discrete management. Human‐induced changes to gene flow however may reduce the power of such an approach. We tested the efficiency of adaptive versus neutral genetic markers in differentiating temporally divergent migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid high gene flow owing to artificial propagation and habitat alteration. We compared seven putative migration timing genes to ten microsatellite loci in delineating three migratory groups of Chinook in the Feather River, CA: offspring of fall‐run hatchery broodstock that returned as adults to freshwater in fall (fall run), spring‐run offspring that returned in spring (spring run), and fall‐run offspring that returned in spring (FRS). We found evidence for significant differentiation between the fall and federally listed threatened spring groups based on divergence at three circadian clock genes (OtsClock1b, OmyFbxw11, and Omy1009UW), but not neutral markers. We thus demonstrate the importance of genetic marker choice in resolving complex life history types. These findings directly impact conservation management strategies and add to previous evidence from Pacific and Atlantic salmon indicating that circadian clock genes influence migration timing. 相似文献
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Alifa Bintha Haque Rachel D. Cavanagh Julia L. Y. Spaet 《Conservation Science and Practice》2022,4(7):e12704
Increasing fishing pressure has negatively impacted elasmobranch populations globally. Despite high levels of historical and current fishing pressure, the Bay of Bengal region remains data-poor. Focusing on Bangladesh, we conducted a socio-ecological study to characterize elasmobranch fisheries and evaluate their impact on threatened species. The results demonstrate that several globally threatened elasmobranch species are frequently captured, and some of them have experienced substantial population declines (e.g., wedgefishes, sawfishes, large carcharhinid sharks) over the past decade. A decrease in elasmobranch diversity, abundance, and size of caught specimens was also reported, which was attributed to increased fishing intensity, destructive practices (e.g., bottom trawling), and an accessible elasmobranch market. While catch and trade of more than 90 elasmobranchs are regulated under Bangladesh's law, non-compliance is widespread. Likely causes include a dearth of awareness, practical alternative livelihoods, and technical facilities, and the complex nature of the fisheries. Encouraging and facilitating the engagement of fishers in science (data collection), local governance (policy-making), and field implementation (bycatch mitigation) is vital. These interventions must be rooted in sustainable approaches and co-designed with fishers, with appropriate training available. Development of this work through enhanced engagement with fishers has the potential to transform the elasmobranch fishery situation in Bangladesh and could be used as a model for data-poor regions. 相似文献