Biophysical modeling of the temporal niche: from first principles to the evolution of activity patterns

Most mammals can be characterized as nocturnal or diurnal. However infrequently, species may overcome evolutionary constraints and alter their activity patterns. We modeled the fundamental temporal niche of a diurnal desert rodent, the golden spiny mouse, Acomys russatus. This species can shift into nocturnal activity in the absence of its congener, the common spiny mouse, Acomys cahirinus, suggesting that it was competitively driven into diurnality and that this shift in a small desert rodent may involve physiological costs. Therefore, we compared metabolic costs of diurnal versus nocturnal activity using a biophysical model to evaluate the preferred temporal niche of this species. The model predicted that energy expenditure during foraging is almost always lower during the day except during midday in summer at the less sheltered microhabitat. We also found that a shift in summer to foraging in less sheltered microhabitats in response to predation pressure and food availability involves a significant physiological cost moderated by midday reduction in activity. Thus, adaptation to diurnality may reflect the "ghost of competition past"; climate-driven diurnality is an alternative but less likely hypothesis. While climate is considered to play a major role in the physiology and evolution of mammals, this is the first study to model its potential to affect the evolution of activity patterns of mammals.     

Species delimitation in the Acomys cahirinus–dimidiatus complex (Rodentia, Muridae) inferred from chromosomal and morphological analyses

Our earlier chromosome banding studies of Acomys cahirinus and Acomys dimidiatus (the latter long considered to be a subspecies of the former) revealed that, despite very close diploid numbers (36 vs. 38), these taxa possess sharply different karyotypes and undoubtedly belong to different species. In this context, the taxonomic status and the relationship between the two chromosomal forms in Sinai (2 n  = 36) and Israel (2 n  = 38), chromosomally homozygous across a vast range except for a very narrow hybrid zone, remain poorly documented. Neither of these forms have previously been studied by chromosome banding; thus, the exact nature of chromosomal differences as well as the species to which these forms should be assigned remain unknown. Here, we present the data on comparative G-banding analysis and morphometrics of Acomys from Israel, Sinai, and Saudi Arabia, and a hybrid obtained in laboratory crosses between latter two. The analysis revealed that karyotype of Acomys from Israel is identical to that of Acomys from Saudi Arabia and both are different from that of Acomys from Sinai by one Robertsonian fusion. Therefore, karyotypically, all three are very different from A. cahirinus . It follows from the study that Sinai and probably Arabian peninsula and Minor Asia must be excluded from geographical distribution of A. cahirinus , which is limited from West Sahara to Egypt along Nile river (except Sinai). Furthermore, the synthesis of chromosomal and recent molecular data suggests a phylogeographical scenario explaining the modern distribution of Acomys in the Sinai and Arabian peninsulas and permits the update of the taxonomic status of these populations.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 91 , 203–214.     

The role of remnants of Amazon savanna for the conservation of Neotropical mammal communities in eucalyptus plantations

In this study, we investigated the effects of the partial conversion of native Amazon savanna into a eucalyptus plantation on the richness, composition, and abundance of medium and large mammals. Considering these plantations as an integral component of a patchwork savanna landscape, we verified how the negative effects of these plantations can be buffered by the conservation of remnants of native habitat within their area. We analyzed the contribution of each type of Amazonian savanna to the maintenance of the mammalian fauna and the potential of eucalyptus plantations to substitute these native habitats. A total of 23 mammal species were recorded in line-transect surveys conducted within the conserved savanna. By contrast, only eight species were recorded in the eucalyptus plantation and none of them were exclusive to this vegetation. However, the landscape patchwork formed by plantations and savanna was more diverse and contained 19 species of mammals, highlighting the potential importance of remnant savanna vegetation. The maintenance of remnants of savanna habitat may thus be essential for ensuring the conservation of mammals in the anthropogenic landscape of this region. It will also be important to include as many different subtypes of native savanna vegetation as possible and to consider the connectivity between habitats.     

Loss of mammalian species from the South American Gran Chaco: empty savanna syndrome?

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Cytochrome b sequences reveal Acomys minous (Rodentia, Muridae) paraphyly and answer the question about the ancestral karyotype of Acomys dimidiatus

Sequences of the cytochrome b (cyt b) mitochondrial gene show that the spiny mouse Acomys from Crete, known as the endemic species A. minous, is composed of two distinct maternal lineages ("A" and "B"). Group "A" sequences cluster with A. nesiotes (Cyprus) and group "B" sequences cluster with A. cilicicus (Turkey), which is evidence of paraphyly of A. minous in regard to these two species. From cyt b sequences, the three taxa are very closely related to A. cahirinus (Egypt): the maximum divergence found among these sequences is 1.6%, which is equivalent to the intraspecific diversity observed in other Acomys species. Paleozoology evidenced that man unintentionally introduced Acomys into Crete and Cyprus during antiquity. The divergence time between Acomys cyt b sequences found in Crete was estimated at 0.4 Myr, which means that the diversity observed did not appear after the introduction but reflects a much more ancient polymorphism. Cytochrome b phylogeny and cytogenetic data together comprise evidence that, within the species A. dimidiatus (Saudi Arabia, Israel, Egypt), it is the karyotypic form with 36 chromosomes that derives from the form with 38 chromosomes, due to a single acrocentric fusion.     

Seasonal thermogenic acclimation of diurnally and nocturnally active desert spiny mice

Diurnally active golden spiny mice (Acomys russatus) and nocturnal common spiny mice (Acomys cahirinus) coexist in hot rocky deserts of Israel. Diurnal and nocturnal activities expose these species to different climatic conditions. Nonshivering thermogenesis (NST) capacity of individuals of both species immediately upon removal from the field exhibited seasonal changes, with no significant interspecific difference. Colony-reared mice of either species transferred in the laboratory from long to short photoperiod increased NST capacity, though to a lesser extent than observed in the seasonal acclimatization. The underlying biochemical mechanisms of short photoperiod acclimation differed between the species. In both Cytochrome-c oxidase (Cox) activity was higher in short as compared to long photoperiod. In short-photoperiod-acclimated A. cahirinus uncoupling protein (UCP) content in brown adipose tissue (BAT) was significantly higher than in long photoperiod, while in A. russatus there was no significant change. In A. russatus there was a significant increase in lipoprotein lipase (LPL) activity in BAT in short-photoperiod-acclimated individuals, while in A. cahirinus LPL activity was high under both acclimations. The low LPL activity in brown adipose tissue of desert-adapted A. russatus may facilitate lipid uptake in white adipose tissue, an advantage in desert conditions where food is scarce and irregularly distributed in space and time.     

Effect of dietary preformed water on energy and water budgets of two sympatric desert rodents, Acomys russatus and Acomys calzivinus

Golden spiny mice ( Acomys russatus ) and common spiny mice ( Acomys cahirinus ) are omnivorous rodents that are sympatric in many rocky areas in Israeli deserts. They are similar in body size and diet habits. They differ in that A. cahirinus are nocturnal whereas A. russatus are diurnal and A. russatus inhabit extremely arid areas where A. cahirinus are absent. These differences led us to hypothesix that A. russatus are more conservative in their water needs and thererore are ahle to consumc a drier diet than A. chairinus. To test this hypothesis we oikrcd both species a dry ration and different numbers of snails and measured their energy and water intakes and their body mass changes.
Acomys russatus were capable of maintaining body mass on a much drier diet than A. cahirinus and therefore our hypothesis was supported. In order to maintain body mass A. cahirinus required about 2·1 ml/day (or about 4·7% body mass) preformed water, about twice the volume required by A. russatus. They also required a diet that had a water content of 48·3%, of the fresh matter, which was about 20% higher than that of A. russatus. The main reason why A. russatus needed less water was that they losl less by evaporation than A. cahirinus did. We suggest that the lower preformed water needs of A. russatus and their ability to consume a drier diet allom them to tolerate higher air temperatures and to inhabit extreme deserts where A. cahirinus are absent.     

Chimpanzees (Pan troglodytes verus) and their mammalian sympatriates: Mt. Assirik,Niokolo-Koba National Park,Senegal

In intact, mosaic ecosystems, chimpanzees are sympatric with a wide range of other mammals, which may be predators, prey, or competitors. We delve beyond the nominal data of species lists to interval-level data on 35 medium-bodied and large-bodied mammals encountered at a hot, dry, and open field site in far West Africa. Frequency of encounter, habitat where found, and number of individuals encountered are analysed for species for which enough data were accumulated. Further, we compare findings over three periods (1976–1979, 2000, 2012). Species most often encountered were those normally classed as typical savanna forms. Even a crude classification into forest, woodland, and grassland ecotypes yields differences in species likely to meet apes. Comparison of encounter rates over time was surprisingly congruent, although not all species seen in the 1970s survived to the 2000s. Overall, Assirik’s mammalian fauna is comparable to palaeo-faunal guilds sympatric with various extinct hominins.     

Differential energy costs of winter acclimatized common spiny mice Acomys cahirinus from two adjacent habitats

The common spiny mouse Acomys cahirinus, of Ethiopian origin, has a widespread distribution across arid, semi-arid and Mediterranean parts of the Arabian sub-region. We compared the daily energy expenditure (DEE), water turnover (WTO) and sustained metabolic scope (SusMS=DEE/resting metabolic rate) of two adjacent populations during the winter. Mice were captured from North- and South- facing slopes (NFS and SFS) of the same valley, comprising mesic and xeric habitats, respectively. Both DEE and SusMS winter values were greater in NFS than SFS mice and were significantly greater than values previously measured in the summer for these two populations in the same environments. However, WTO values were consistent with previously established values and were not significantly different from allometric predictions for desert eutherians. We suggest that physiological plasticity in energy expenditure, which exists both temporally and spatially, combined with stable WTO, perhaps reflecting a xeric ancestry, has enabled A. cahirinus to invade a wide range of habitats.     

Enzymatic and metabolic responses to affluent diet of two diabetes-prone species of spiny mice: Acomys cahirinus and Acomys russatus

The adaptive responses to sucrose and fat diets were investigated in two species of spiny mice, Acomys russatus and Acomys cahirinus, in relation to their propensity to develop diabetic-like symptoms. A russatus gained weight pronouncedly, both on regular and fat-rich seed diet, did not exhibit hyperglycemia or hyperlipidemia but had highly increased hepatic triglyceride content in association with high levels of circulating free fatty acids and incidence of ketonuria in 10 of 41 animals. On the other hand, A. cahirinus exhibited a moderate weight gain on the fat diet which was accompanied by hyperglycemia but no hyperlipidemia or ketonuria. Neither weight gain nor ketonuria were evident in A. russatus and A. cahirinus on the sucrose-rich diet, but there was hyperlipidemia in the latter species. A. cahirinus, in particular, showed many-fold induction of liver enzymes, of regulatory importance in the pathways of glycolysis and lipogenesis, which could be linked to the hyperlipidemia in this species. On the fat diet there was a smaller increase in activity in enzymes related to gluconeogenesis in A. russatus compared with A. cahirinus, as well as a smaller suppression of glycolytic and lipogenic enzymes. Adipose tissue lipoprotein lipase activity rose in response to the fat-rich diet, more markedly in A. russatus than A. cahirinus in correlation to the more marked weight gain and hyperinsulinemia in this species. The affluent diets, especially sucrose, elicited an increase in circulating triiodothyronine levels which was more pronounced in A. cahirinus than in A. russatus.(ABSTRACT TRUNCATED AT 250 WORDS)     

Conservation of mammals on a tobacco farm on the Highlands of Malawi

The natural vegetation of the Shire Highlands of Malawi has become fragmented because of human activities. As a consequence, some species of mammals have become locally extinct and the population numbers and geographical ranges of other species have declined. This study investigated the species richness of mammals on a commercial tobacco farm, and the importance of remnants of natural vegetation on farms for the conservation of mammals. The farm covered 180 ha and supported 44 species of mammals (equivalent to 66% of the species known to occur in the Shire Highlands at a similar altitude, and 24% of the total mammalian fauna of Malawi). Most of the species were bats (22 species) and rodents (13 species). The largest remnants of natural 'miombo' woodland supported more species and more individuals than smaller remnants. The high species richness was due, in part, to the variety of different habitats on the farm ('miombo' woodland, riverine forest, grassland, swamp, streams and dams), as well as to good conservation practices. The farm is especially important for the conservation of 13 species which are rare and/or have limited geographical ranges in Malawi. It is suggested that well-managed farms which contain remnants of natural vegetation can play a significant role in the conservation of mammals, and other vertebrates, in Central Africa.     

Resource selection and its implications for wide-ranging mammals of the brazilian cerrado

Conserving animals beyond protected areas is critical because even the largest reserves may be too small to maintain viable populations for many wide-ranging species. Identification of landscape features that will promote persistence of a diverse array of species is a high priority, particularly, for protected areas that reside in regions of otherwise extensive habitat loss. This is the case for Emas National Park, a small but important protected area located in the Brazilian Cerrado, the world's most biologically diverse savanna. Emas Park is a large-mammal global conservation priority area but is too small to protect wide-ranging mammals for the long-term and conserving these populations will depend on the landscape surrounding the park. We employed novel, noninvasive methods to determine the relative importance of resources found within the park, as well as identify landscape features that promote persistence of wide-ranging mammals outside reserve borders. We used scat detection dogs to survey for five large mammals of conservation concern: giant armadillo (Priodontes maximus), giant anteater (Myrmecophaga tridactyla), maned wolf (Chrysocyon brachyurus), jaguar (Panthera onca), and puma (Puma concolor). We estimated resource selection probability functions for each species from 1,572 scat locations and 434 giant armadillo burrow locations. Results indicate that giant armadillos and jaguars are highly selective of natural habitats, which makes both species sensitive to landscape change from agricultural development. Due to the high amount of such development outside of the Emas Park boundary, the park provides rare resource conditions that are particularly important for these two species. We also reveal that both woodland and forest vegetation remnants enable use of the agricultural landscape as a whole for maned wolves, pumas, and giant anteaters. We identify those features and their landscape compositions that should be prioritized for conservation, arguing that a multi-faceted approach is required to protect these species.     

Size and structure of populations of Oedura reticulata (Reptilia: Gekkonidae) in woodland remnants: Implications for the future regional distribution of a currently common species

Abstract The gecko Oedura reticulata is restricted in distribution to the southwest of Western Australia. Within this region O. reticulata occurs mainly in smooth-barked eucalypt woodland habitat, much of which has become fragmented by clearing. In this study, demographic characteristics of nine populations of O. reticulata that currently persist in eucalypt woodland remnants are assessed and compared with those of populations in three nature reserves. The remnants cover a range of sizes but are similar in age, tree species composition and vegetation structure. Population sizes vary considerably among remnants and are poorly correlated with remnant size or the number of smooth-barked eucalypts. Population size does not appear to be limited by habitat availability in most remnants. The number of adults of breeding age is small in most populations suggesting that they may be susceptible to stochastic extinction pressures. The poor dispersal ability of this species between remnants means that the possibility of recolonization of a remnant following an extinction event is unlikely. As a result, the occupancy rate of O. reticulata in remnant woodland is likely to decline.     

Strong positive effects of termites on savanna bird abundance and diversity are amplified by large herbivore exclusion

Vast areas of the African savanna landscapes are characterized by tree‐covered Macrotermes termite mounds embedded within a relatively open savanna matrix. In concert with termites, large herbivores are important determinants of savanna woody vegetation cover. The relative cover of woody species has considerable effects on savanna function. Despite the potentially important ecological relationships between termite mounds, woody plants, large herbivores, and birds, these associations have previously received surprisingly little attention. We experimentally studied the effects of termites and large herbivores on the avian community in Lake Mburo National Park, Uganda, where woody vegetation is essentially limited to termite mounds. Our experiment comprised of four treatments in nine replicates; unfenced termite mounds, fenced mounds (excluding large mammals), unfenced adjacent savanna, and fenced savanna. We recorded species identity, abundance, and behavior of all birds observed on these plots over a two‐month period, from late dry until wet season. Birds used termite mounds almost exclusively, with only 3.5% of observations occurring in the treeless intermound savanna matrix. Mean abundance and species richness of birds doubled on fenced (large herbivores excluded) compared to unfenced mounds. Feeding behavior increased when large mammals were excluded from mounds, both in absolute number of observed individuals, and relative to other behaviors. This study documents the fundamental positive impact of Macrotermes termites on bird abundance and diversity in an African savanna. Birds play crucial functional roles in savanna ecosystems, for example, by dispersing fruits or regulating herbivorous insect populations. Thus, the role of birds in savanna dynamics depends on the distribution and abundance of termite mounds.     

Temporal partitioning among diurnally and nocturnally active desert spiny mice: energy and water turnover costs

Nocturnal Acomys cahirinus and diurnally active A. russatus coexist in hot rocky deserts. Diurnal and nocturnal activity exposes them to different climatic challenges. A doubly-labelled water field study revealed no significant differences in water turnover between the species at all seasons, reflecting the adaptations of A. russatus to water conservation. In summers the energy expenditure of A. russatus tended to be higher than that of A. cahirinus. Energy requirements of A. cahirinus in winter are double than that of A. russatus, and may reflect the cost of thermoregulating during cold nights.     

The impact of shrub encroachment on savanna bird diversity from local to regional scale

Aim  Evidence is accumulating of a general increase in woody cover of many savanna regions of the world. Little is known about the consequences of this widespread and fundamental ecosystem structural shift on biodiversity.
Location  South Africa.
Methods  We assessed the potential response of bird species to shrub encroachment in a South African savanna by censusing bird species in five habitats along a gradient of increasing shrub cover, from grassland/open woodland to shrubland dominated by various shrub species. We also explored historical bird species population trends across southern Africa during the second half of the 20th century to determine if any quantifiable shifts had occurred that support an ongoing impact of shrub encroachment at the regional scale.
Results  At the local scale, species richness peaked at intermediate levels of shrub cover. Bird species composition showed high turnover along the gradient, suggesting that widespread shrub encroachment is likely to lead to the loss of certain species with a concomitant decline in bird species richness at the landscape scale. Finally, savanna bird species responded to changes in vegetation structure rather than vegetation species composition: bird assemblages were very similar in shrublands dominated by Acacia mellifera and those dominated by Tarchonanthus camphoratus .
Main conclusions  Shrub encroachment might have a bigger impact on bird diversity in grassland than in open woodland, regardless of the shrub species. Species recorded in our study area were associated with historical population changes at the scale of southern Africa suggesting that shrub encroachment could be one of the main drivers of bird population dynamics in southern African savannas. If current trends continue, the persistence of several southern African bird species associated with open savanna might be jeopardized regionally.     

A biogeographical regionalization of Angolan mammals

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Comparative non-shivering thermogenesis in adjacent populations of the common spiny mouse (Acomys cahirinus) from opposite slopes: the effects of increasing salinity

We compared non-shivering thermogenesis between two adjacent populations of the common spiny mouse Acomys cahirinus from different habitats, in relation to increasing salinity. Individuals were captured from the north- and south-facing slopes of the same valley, that represent "Mediterranean" and "desert" habitats, respectively. We hypothesized that the two populations of mice would differ in their thermoregulatory capacities, reflecting their need to cope with the environmental stress in each habitat. We measured resting metabolic rate by recording oxygen consumption, body temperature and response to an injection of exogenous noradrenaline. Mice were maintained on diets with increasing levels of salt intake to examine their abilities to cope with increasing osmotic stress. Mice from north-facing slopes generally had a higher resting metabolic rate and a higher increase in oxygen consumption in response to noradrenaline than mice from south-facing slopes. Increasing salinity decreased resting metabolic rate values, body temperature, and oxygen consumption in response to noradrenaline in both populations, and diminished slope-dependant differences. We suggest that these differences could be a result of an ongoing adaptive process to different climatic conditions, typical of the Mediterranean region, that are a demonstrable example of evolution in action.     

A comparison of postnatal thermal physiology and energetics in an altricial (Gerbillus perpallidus) and a precocial (Acomys cahirinus) rodent species

1. Daily weight increase is polyphasic in Gerbillus perpallidus whereas it follows a linear pattern in Acomys cahirinus. 2. Young A. cahirinus achieve full homeothermic capacities much earlier (less than or equal to 12 days old) than G. perpallidus (19-21 days old). 3. The differences in the development of the two species are reflected in the alterations of their metabolic rates. 4. In both species, age-dependent phases of development are obvious, beginning, however, much later in G. perpallidus. 5. It is concluded that, by postponing functional maturity, considerably more energy can be allocated to growth. This may be a precondition for the altricial mode of development.     

Abundance and habitat relationships of breeding birds in the Sky Islands and adjacent Sierra Madre Occidental of northwest Mexico

The Sierra Madre Occidental and neighboring Madrean Sky Islands span a large and biologically diverse region of northwest Mexico and portions of the southwestern United States. Little is known about the abundance and habitat use of breeding birds in this region of Mexico, but such information is important for guiding conservation and management. We assessed densities and habitat relationships of breeding birds across Sky Island mountain ranges in Mexico and adjacent portions of the Sierra Madre from 2009 to 2012. We estimated densities at multiple spatial scales, assessed variation in densities among all major montane vegetation communities, and identified and estimated the effects of important habitat attributes on local densities. Regional density estimates of 65% of 72 focal species varied significantly among eight montane vegetation communities that ranged from oak savannah and woodland at low elevations to pine and mixed‐conifer forest at high elevations. Greater proportions of species occurred at peak densities or were relatively restricted to mixed‐conifer forest and montane riparian vegetation likely because of higher levels of structural or floristic diversity in those communities, but those species were typically rare or uncommon in the Sky Islands. Fewer species had peak densities in oak and pine‐oak woodland, and species associated with those communities were often more abundant across the region. Habitat models often included the effects of broadleaf deciduous vegetation cover (30% of species), which, together with tree density and fire severity, had positive effects on densities and suggest ways for managers to augment and conserve populations. Such patterns combined with greater threats to high‐elevation conifer forest and riparian areas underscore their value for conservation. Significant populations of many breeding bird species, including some that are of concern or were not known to occur regionally or in mountain ranges we surveyed, highlight the importance of conservation efforts in this area of Mexico.