Genomic and physiological diversity amongst strains of Thiobacillus ferrooxidans,and genomic comparison with Thiobacillus thiooxidans

Twenty-three strains of Thiobacillus ferrooxidans of known pedigree were examined. Thirteen strains survived 65° C for 5 min and 7 of these for 10 min, but sporulation was never observed. All strains grew between 25° C and 35° C and some strains grew at 5° and 40° C. They were genomically diverse, comprising 7 DNA homology groups, and the GC content varied from 55–65 mol %. Correlation between genomic group and growth temperature was noted. All strains grew on ferrous sulfate as energy source, but some failed to utilize elemental sulfur. Acidified thiosulfate supported growth of most of the strains examined but it was judged to be a poor substrate upon which to base taxonomic conclusions because of decomposition of thiosulfate in acid. Six strains of Thiobacillus thiooxidans showed negligible genomic affinity to T. ferrooxidans, and they comprised 2 DNA homology groups and their GC content varied from 52–62 mol%. Anomalies due to contaminants in cultures of T. ferrooxidans were resolved, and the contaminants were identified.     

Heat and cold shock responses in different strains of Thiobacillus ferrooxidans

Different strains of Thiobacillus ferrooxidans were examined for their ability to produce a heat shock and a cold shock response. Strain A1, heat shocked from 20° to 35°C, acquired thermotolerance, as it showed a 1000-fold reduction in cell mortality when exposed to the supermaximum temperature of 42°C, as compared to a non-heat-shocked control. A heat shock from 25° to 35°C yielded similar results, although a higher degree of thermotolerance was achieved for the shorter exposure times. Cultures heat shocked for 5 h showed a five-log reduction in viable counts after 41 h at 42°C, whereas non-heat-shocked cultures showed a similar reduction in viability in 28 h. Conferred thermotolerance was immediate and sustained for the duration of the exposure to 42°C. Heat-shocked cultures were not significantly protected against loss of viability due to freezing (-15°C for 24 h). Strain S2, cold shocked from 25° to 10°C, and strain D6, cold shocked from 25° to 5°C, were not protected against freezing at-15°C. An analysis of proteins extracted from heat-shocked cells of strain A1 showed the presence of at least one newly induced protein and eight hyper-induced proteins. The molecular weights of the heat shock proteins were in the range of 15–80.3 kDa.     

Isolation and physiological characterisation of Thiobacillus aquaesulis sp. nov., a novel facultatively autotrophic moderate thermophile

A moderately thermophilic, facultatively chemolithoautotrophic thiobacillus isolated from a thermal sulphur spring is described. It differs from all other species currently known to be in culture. It grows lithoautotrophically on thiosulphate, trithionate or tetrathionate, which are oxidized to sulphate. Batch cultures on thiosulphate do not produce tetrathionate, but do precipitate elemental sulphur during growth. In autotrophic chemostat cultures the organism produces yields on thiosulphate, trithionate and tetrathionate that are among the highest observed for a Thiobacillus. Autotrophic cultures contain ribulose bisphosphate carboxylase. Heterotrophic growth has been observed only on complex media such as yeast extract and nutrient broth. It is capable of autotrophic growth and denitrification under anaerobic conditions with thiosulphate and nitrate. It grows between 30 to 55° C, and pH 7 to 9, with best growth at about 43°C and pH 7.6. It contains ubiquinone Q-8, and its DNA contains 65.7 mol% G+C. The organism is formally described and named as Thiobacillus aquaesulis.Now the Department of Biological Sciences     

Optimum Conditions for the Storage of Potato Virus YNTN Strain

The effect of storage conditions on the serological activity of two isolates of potato virus Y^NTN strain (PVY^NTN) was studied by ELISA. Purified virus, intact and homogenized infected leaves stored freeze-dried and frozen at various temperatures were tested. Purified virus was the most stable at +4 °C and non-purified virus was best preserved as a freeze-dried leaf homogenate at –20 °C. Their serological activity did not change after three months of storage.     

Thiobacillus plumbophilus spec. nov., a novel galena and hydrogen oxidizer

From an uranium mine three strains of rodshaped, mesophilic, chemolithoautotrophic bacteria were isolated. They grow by oxidation of H₂S, galena (PbS) and H₂. Anglesite (PbSO₄) is formed from galena. No ferrous iron is oxidized by the isolates. They grow between pH 4 and 6.5 at temperatures of about 9 to 41°C (optimum around 27°C). The G+C content of the DNA is around 66 mol %. Based on their ability to oxidize sulfur compounds, the new organisms belong to the genus Thiobacillus. No significant homology with Thiobacillus ferrooxidans and Thiobacillus cuprinus was detected by DNA-DNA hybridization. Therefore the new isolates represent a new species within the genus Thiobacillus. Based on the unusual growth on galena, we name the new species Thiobacillus plumbophilus (type strain Gro 7; DSM 6690).     

Low-temperature storage of Rauvolfia serpentina Benth. ex Kurz.: An endangered,endemic medicinal plant

On a standard shoot culture medium, nodal cultures of Sarpagandha (Rauvolfia serpentina) could be maintained for nine months at 25° C by replacing cotton plugs with polypropylene caps as enclosures for culture tubes. Low temperature incubation of in vitro cultures appeared highly promising because cultures exhibited normal health even after 15 months of storage at 15° C; while 10°C and 5°C were found deleterious to growth of the cultures of R. serpentina.     

Preservation of fresh BCG scarification vaccine at 4, −25, and −70° C

Summary Batches of BCG to be used as a scarification vaccine by suspension in a new liquid may be preserved at 4, –25, and –70° C. During storage the colony-forming units have been found to be practically unchanged after 3 months at 4° C, 9 months at –25° C, and 3 years at –70° C. The biological controls in animals agree with those in vitro.     

Oxidation of reduced sulphur compounds by intact cells of Thiobacillus acidophilus

Oxidation of reduced sulphur compounds by Thiobacillus acidophilus was studied with cell suspensions from heterotrophic and mixotrophic chemostat cultures. Maximum substrate-dependent oxygen uptake rates and affinities observed with cell suspensions from mixotrophic cultures were higher than with heterotrophically grown cells. ph Optima for oxidation of sulphur compounds fell within the pH range for growth (pH 2–5), except for sulphite oxidation (optimum at pH 5.5). During oxidation of sulphide by cell suspensions, intermediary sulphur was formed. Tetrathionate was formed as an intermediate during aerobic incubation with thiosulphate and trithionate. Whether or not sulphite is an inter-mediate during sulphur compound oxidation by T. acidophilus remains unclear. Experiments with anaerobic cell suspensions of T. acidophilus revealed that trithionate metabolism was initiated by a hydrolytic cleavage yielding thiosulphate and sulphate. A hydrolytic cleavage was also implicated in the metabolism of tetrathionate. After anaerobic incubation of T. acidophilus with tetrathionate, the substrate was completely converted to equimolar amounts of thiosulphate, sulphur and sulphate. Sulphide- and sulphite oxidation were partly inhibited by the protonophore uncouplers 2,4-dinitrophenol (DNP) and carbonyl cyanide m-chlorophenylhydrazone (CCCP) and by the sulfhydryl-binding agent N-ethylmaleimide (NEM). Oxidation of elemental sulphur was completely inhibited by these compounds. Oxidation of thiosulphate, tetrathionate and trithionate was only slightly affected. The possible localization of the different enzyme systems involved in sulphur compound oxidation by T. acidophilus is discussed.     

Maintenance ofRhodotorula rubra isolated from liquid samples of gold mine effluents

TheRhodotorula rubra strain isolated from waste waters of a gold mining plant has demonstrated the ability to grow in the presence of cyanide. The maintenance of this strain in complex organic media leads to a loss of this ability. To preserve the cyanide resistance ofR. rubra we tested the following maintenance methods: subculturing in sterile distilled water, freezing at −20, −40, −70°C, liquid nitrogen freezing and the paper replica method. The ability to grow in the presence of cyanide was preserved and a higher viability level was observed for cells maintained frozen at −70°C, in liquid nitrogen and by the paper replica method. Preservation in distilled water resulted in the lowest viability after twelve months of storage.     

Conservation of reference strains of Fusarium in pure culture

More than 300 reference strains representing 60 species and varieties ofFusarium cultures named according to different taxonomic systems are currently maintained at the American Type Culture Collection (ATCC). They have been preserved by freeze-drying and by freezing and subsequent storage in liquid nitrogen (–196°C) to insure their viability without contamination, variation, mutation, or deterioration. The materials and procedures used at the ATCC for the acquisition, accessioning, cataloguing, preservation and distribution are described. Longevity storage data for the strains available for distribution are presented and discussed.     

Storage of in vitro cultures of Prunus rootstocks

In vitro cultures of three Prunus clones (d. 1869, GF 677 and CAB 11E) were successfully stored at +8°, +4° and-3°C following the proliferation phase.Survival of cultures was dependent upon interactions of storage temperature, light, and age of subculture. Up to 100% of the cultures survived at the end of the trials after 170 (at +4°C) and 200 (at-3°C) days storage. Complete dardness appeared more suitable than 16-h (hour) photoperiod for successful storage at-3°C for up to 10 months. One or two weeks in normal growth room vefore storage at-3°C for up to 10 months. One or two weeks in normal growth room before storage enhanced the survival S^-1. The proliferation of the cultures following storage at-3°C in the first subculture appeared similar to those under standard growth room conditions.Part of the results were presented as a poster at the 10th Congress of Eucapia in Wegeningen, The Netherlands, 19–24 June 1983.This paper in No. 504 of the Istituto Coltivazioni Arboree and No. 232 of the Centro Studi Tecnica Frutticola. The research was partially supported by National Research Council (Roma), G.L. Difesa risorse genetiche delle specie arboree.     

Effects of organic compounds on growth of chemostat cultures of Thiomicrospira pelophila,Thiobacillus thioparus and Thiobacillus neapolitanus

Summary Cultures of Thiomicrospira pelophila, Thiobacillus thioparus and Thiobacillus neapolitanus were grown in thiosulfate-limited chemostats in a mineralsthiosulfate medium with and without organic supplements. Acetate, succinate and mixtures of amino acids increased the dry weight by 12–24% and the protein by 11–38%. Addition of both acetate and succinate had a cumulative effect. Saccharose, glucose, fructose, ribose, glycerol, glycerate, pyruvate, lactate or malate were without effect. The increase in dry weight of T. neapolitanus by ¹⁴C-acetate was directly related to the relative contribution of this compound to the total cell carbon.In CO₂-limited cultures of T. neapolitanus the effects of acetate on dry weight and protein were similar to those found in thiosulfate-limited cultures. In CO₂-limited cultures of T. pelophila a combination of acetate and succinate caused an increase in dry weight of 27% and of 50% in protein, the increase in protein being twice as high as in thiosulfate-limited cultures.There were no measurable differences in the activities of ribulosediphosphate carboxylase (RudPcase) in cell free extracts obtained from thiosulfate- or CO₂-limited cultures of T. pelophila or T. neapolitanus grown in the presence or absence of organic compounds. In T. pelophila the RudPcase activity was almost constant at all growth rates tested, and independent of the type of growth-limitation. For T. neapolitanus the specific RudPcase activity varied slightly with the growth rate. In CO₂-limited cultures the activity was three times that found in thiosulfate-limited cultures, thus showing that the RudPcase activity can be influenced by nutritional conditions.     

Thiobacillus prosperus sp. nov., represents a new group of halotolerant metal-mobilizing bacteria isolated from a marine geothermal field

From the shallow geothermally heated seafloor at the beach of Porto di Levante (Vulcano, Italy) 8 strains of long, tiny rods were isolated, which represent the first marine metal-mobilizing bacteria. Cells are Gram negative. They grow in a temperature range between 23 and 41°C with an optimum around 37°C at a salt concentration of up to 6.0% NaCl. The isolates are obligately chemolithotrophic, acidophilic aerobes which use sulfidic ores, elemental sulfur or ferrous iron as energy sources and procedure sulfuric acid. They show an upper pH-limit of growth at around 4.5. The G+C content of their DNA is around 64 mol%. Based on the results of the DNA-DNA hybridization they represent a new group within the genus Thiobacillus. Isolate LM3 is described as the type strain of the new species Thiobacillus prosperus.     

Acidostability of spheroplasts prepared from Thiobacillus thiooxidans

Thiobacillus thiooxidans was acidostable even in the absence of its respiratory substrate, elementary sulfur. This suggests that the acidostability of the bacterium was energy-independent. The organism was subjected to osmotic shock with 0.75 M sucrose at 0°C and then treated with snail intestinal juice in the presence of 0.3 M sucrose. The decrease in the optical density of the sample thus prepared on dilution with deionized water and electron microscopic observation of the sample showed that spheroplasts were formed from the bacterium by this procedure. Spheroplasts were able to respire sulfur and their respiratory activity was acidostable. Spheroplasts, when treated with Nagase, proteolytic enzyme, lost their acidostability, and some protein components disappeared from the membrane fraction. This suggests that the acidostability of the bacterium may be related to protein components of the membrane.     

Energetics of mixotrophic and autotrophic C1-metabolism by Thiobacillus acidophilus

Although the facultatively autotrophic acidophile Thiobacillus acidophilus is unable to grow on formate and formaldehyde in batch cultures, cells from glucose-limited chemostat cultures exhibited substrate-dependent oxygen uptake with these C₁-compounds. Oxidation of formate and formaldehyde was uncoupler-sensitive, suggesting that active transport was involved in the metabolism of these compounds. Formate- and formaldehyde-dependent oxygen uptake was strongly inhibited at substrate concentrations above 150 and 400 M, respectively. However, autotrophic formate-limited chemostat cultures were obtained by carefully increasing the formate to glucose ratio in the reservoir medium of mixotrophic chemostat cultures. The molar growth yield on formate (Y=2.5 g ·mol^-1 at a dilution rate of 0.05 h^-1) and RuBPCase activities in cell-free extracts suggested that T. acidophilus employs the Calvin cycle for carbon assimilation during growth on formate. T. acidophilus was unable to utilize the C₁-compounds methanol and methylamine. Formate-dependent oxygen uptake was expressed constitutively under a variety of growth conditions. Cell-free extracts contained both dye-linked and NAD-dependent formate dehydrogenase activities. NAD-dependent oxidation of formaldehyde required reduced glutathione. In addition, cell-free extracts contained a dye-linked formaldehyde dehydrogenase activity. Mixotrophic growth yields were higher than the sum of the heterotrophic and autotrophic yields. A quantitative analysis of the mixotrophic growth studies revealed that formaldehyde was a more effective energy source than formate.     

Machine perfusion at 20°C reduces preservation damage to livers from non-heart beating donors

We previously reported that machine perfusion (MP) performed at 20 °C enhanced the preservation of steatotic rat livers. Here, we tested whether rat livers retrieved 30 min after cardiac arrest (NHBDs) were better protected by MP at 20 °C than with cold storage. We compared the recovery of livers from NHBDs with organs obtained from heart beating donors (HBDs) preserved by cold storage. MP technique: livers were perfused for 6 h with UW-G modified at 20 °C. Cold storage: livers were perfused in situ and preserved with UW solution at 4 °C for 6 h. Both MP and cold storage preserved livers were reperfused with Krebs-Heinselet buffer (2 h at 37 °C). AST and LDH release and mitochondrial glutamate dehydrogenase (GDH) levels were evaluated. Parameters assessed included: bile production and biliary enzymes; tissue ATP; reduced and oxidized glutathione (GSH/GSSG); protein–SH group concentration. Livers preserved by MP at 20 °C showed significantly lower hepatic damage at the end of reperfusion compared with cold storage. GDH release was significantly reduced and bile production, ATP levels, GSH/GSSG and protein–SH groups were higher in livers preserved by MP at 20 °C than with cold storage. The best preserved morphology and high glycogen content was obtained with livers submitted to MP at 20 °C. Liver recovery using MP at 20 °C was comparable to recovery with HBDs. MP at 20 °C improves cell survival and gives a better-quality of preservation for livers obtained from NHBDs and may provide a new method for the successful utilization of marginal livers.     

Quantitative measurement of sulphur formation by steady-state and transient-state continuous cultures of autotrophic Thiobacillus species

 Sulphur formation by the obligately chemolithoautotrophic Thiobacillus o and Thiobacillus neapolitanus was studied in aerobic, substrate-limited continuous cultures. The performance of transient-state and steady-state cultures was compared using different methods for measuring sulphur production. Below a dilution rate (D) of 0.3 h^-1 (at 50% air saturation), sulphate-producing steady states were obtained, and cultures grown with sulphide or thiosulphate (at D=0.06 h^-1) showed similar characteristics (e.g. cell yields, oxidation capacities and CO₂-fixation capacities). Elemental sulphur was a major product above D=0.3 h^-1, but steady states were difficult to achieve, because of adherence of sulphur to the fermentor surfaces and the accumulation of sulphide. These problems could be circumvented using transient-state experiments of 1 h. It was then found that elemental sulphur was formed under oxygen limitation or at high substrate load. The rates of sulphur formation obtained by sulphur analysis agreed with the values calculated from stoichiometric balances. Sulphide and thiosulphate proved to be equivalent substrates for both Thiobacillus species during elemental sulphur formation under the conditions tested. It is concluded that transient-state cultures of thiobacilli, pregrown as sulphate-producing steady-state cultures, provide experimental conditions for the quantitative assessment of sulphur formation from (labile) sulphide and from thiosulphate. Received: 15 May 1995 / Received revision: 4 August 1995 / Accepted: 22 August 1995     

Isolation and characterization of Thiobacillus hydrothermalis sp. nov., a mesophilic obligately chemolithotrophic bacterium isolated from a deep-sea hydrothermal vent in Fiji Basin

A novel obligately chemolithotrophic Thiobacillus species isolated from a deep-sea hydrothermal vent is described. This organism grows lithoautotrophically on thiosulphate, tetrathionate, sulphide and sulphur which are oxidized to sulphate. The isolate is slightly halophilic and markedly halotolerant, showing optimum growth at pH 7.5 and at 35°C. The G+C content of the DNA is 67.1 mol%. The 16S rRNA sequence is distinct from any other Thiobacilli sequences. Phylogenetic analysis shows the organism to be a representative of the -group of proteobacteria and a specific relative of Thiobacillus neapolitanus. The ubiquinone is ubiquinone-8. These characters distinguish the isolate from any other Thiobacillus or Thiomicrospira species previously reported and is a new species described as Thiobacillus hydrothermalis. The type strain is isolate R3, DSM7121.     

Yeasts preservation: alternatives for lyophilisation

The aim of the study was to compare the effect of two low-cost, low technology traditional methods for drying starter cultures with standard lyophilisation. Lyophilised yeast cultures and yeast cultures preserved in dry rice cakes and dry plant fibre strands were examined for viable cell counts during 6?months storage at 4 and 25?°C. None of the yeast cultures showed a significant loss in viable cell count during 6?months of storage at 4?°C upon lyophilisation and preservation in dry rice cakes. During storage at 25?°C in the dark, yeast cultures preserved in dry rice cakes, and lyophilised cultures of Saccharomyces cerevisiae and Issatchenkia orientalis showed no significant loss of viable cells up to 4?months of storage. Yeast cultures preserved in dry plant fibre strands had the greatest loss of viable count during the 6?months of storage at 25?°C. Preservation of yeasts cultures in dry rice cakes provided better survival during storage at 4?°C than lyophilisation. The current study demonstrated that traditional methods can be useful and effective for starter culture preservation in small-scale, low-tech applications.     

Effects of non-frozen cold storage on the growth,organogenesis and secondary metabolism of callus cultures

Callus tissues derived from chilling-tolerant herbaceous plant, Atractylodes lancea, Atropa belladonna, Bupleurum falcatum, Dioscorea tokoro, Lithospermum erythrorhizon and Phytolacca americana could be cold-stored at 4°C for three months or more, whereas those from chilling-sensitive herbaceous plants such as Datura innoxia and Perilla frutescens var. crispa and a deciduous tree, Mallotus japonicus, could not survive after cold storage for two to three months. Tobacco callus cultures could be stored at 4°C for two or four months depending on a callus strain. The effect of cold storage on secondary metabolite production varied. Nicotine and betalain production suffered from cold storage of tobacco and Phytolacca americana callus cultures, respectively. However, production of anthocyanin in cultures of Mallotus japonicus and Bupleurum falcatum and shikonin derivatives in Lithospermum erythrorhizon callus was affected very little. Root-forming ability was retained for more than one year in cold-stored callus tissues of Bupleurum falcatum, while the control callus tissues maintained at 25°C completely lost the organogenetic ability six months after the first subculture.