Taphonomic signatures on modern molluscs and corals from Red Sea coast,southern Saudi Arabia

Bioeroded gastropod, bivalve and coral specimens (n = 570) were collected from the Jazan area, Saudi Red Sea coast, from which 22 ichnospecies of 8 ichnogenera were identified and illustrated. These traces were produced by clionid sponges (Entobia geometrica, E. ovula, E. cf. goniodes, E. cretacea, E. laquea, E. cf. paradoxa and E. isp.), duraphagous drillers (Oichnus ovalis, O. paraboloides, O. simplex and O. isp.), endolithic bivalves (Gastrochaenolites cf. dijugus, G. lapidicus, G. torpedo and G. isp.), polychaete annelids (Caulostrepsis taeniola, C. isp., Maeandropolydora sulcans, M. isp. and ?Trypanites isp.), acorn barnacles (Rogerella isp.), and vermetid gastropods (Renichnus isp.). The seashells act as hard substrate for colonization by serpulid worm, bivalves, bryozoans, and barnacles. Ichnogenus Entobia was most abundant (56.1%), followed by Gastrochaenolites (25.4%), Caulostrepsis (5.3%), Trypanites (4.2%), Maeandropolydora (3.2%), Oichnus (2.8%), Renichnus (1.9%), and Rogerella (1.0%). Oichnus occurred on the thin-shelled and smooth molluscs, while most Gastrochaenolites borings were found in the larger and thicker seashells as a suitable substrate for the settlement of polychaetes, lithophages, naticids, mytilids, and vermetids. Presence of annelid traces among radial ribs and at the siphonal areas of bivalves is indicative of nutrient capturing from water flow during the lifetime of these bivalves, within a shallow, high energy marine environment, where disarticulation, fragmentation, and abrasion of the seashells were abundantly observed.     

Seed-borne fungi in domestic bird feed in Saudi Arabia

Seed-borne fungi from seeds of barley, canary, maize, oats, rice, rapeseed, red millet, sunflower, white millet and yellow millet were investigated. These seeds are available in the market as bird feed, supplied by companies in various countries as healthy and nutritious food for domestic birds. A total of 81 fungal species were isolated. The genusAspergillus was predominant with 23 species, followed byPenicillium with 18,Ulocladium with 7,Alternaria with 6 andChaetomium, Curvularia andDrechslera with 5 species each. Other genera isolated wereAureobasidium, Cladosporium, Fusarium, Mucor, Rhizopus andSyncephalastrum.     

Status of breeding seabirds on the Northern Islands of the Red Sea,Saudi Arabia

We undertook breeding surveys between 2010 and 2011 to assess the status of breeding birds on 16 islands in the northern Saudi Arabia. Sixteen bird species were found breeding at three different seasons; i.e. winter (Osprey), spring (Caspian and Saunder’s Terns), and summer (Lesser Crested, White-cheeked, Bridled Terns). It is postulated that food availability is an important factor influencing the breeding of seabirds in the northern Saudi Arabian Red Sea. Several species laid eggs earlier in northern parts of the Red Sea than in southern parts. The predicted increases in temperatures (T_a) could have a negative effect on species survival in the future, especially on those whose nests that are in the open. Finally, disturbance, predation and egg collection were probably the main immediate threats affecting the breeding seabird species in the northern Red Sea.     

红树林细菌Rhodococcus ruber1K降解邻苯二甲酸二丁酯的研究

A di-n-butyl phthalate (DBP)degrading bacterium Rhodococcus ruber was isolated from mangrove soil,and its degrading characteristics were studied.The results showed that the bacterium could grow well on the substrate with DBP as the sole source of carbon and energy,and the DBP of 50 mg稬^-1 could be completely degraded after 48 h.Under aerobic condition,the tentative pathway proposed for DBP degradation was through monoester initially,then phthalic acid,and finally CO₂ and H₂O.     

Molecular identification of isolated fungi from stored apples in Riyadh,Saudi Arabia

Fungi causes most plant disease. When fruits are stored at suboptimal conditions, fungi grows, and some produce mycotoxin which can be dangerous for human consumption. Studies have shown that the Penicillium and Monilinia species commonly cause spoilage of fruits, especially apples. Several other genera and species were reported to grow to spoil fruits. This study was conducted to isolate and identify fruit spoilage by fungi on apples collected in Riyadh, Saudi Arabia and conduct a molecular identification of the fungal isolates. Thus, we collected 30 samples of red delicious and Granny Smith apples with obvious spoilage from different supermarkets between February and March of 2012 in Riyadh, Saudi Arabia. Each apple was placed in a sterile plastic bag in room temperature (25–30 °C) for six days or until fungal growth was evident all over the sample. Growth of fungal colonies on PDA was counted and sent for molecular confirmation by PCR. Six fruit spoilage fungi were isolated, including Penicillium chrysogenum, Penicillium adametzii, Penicillium chrysogenum, Penicillium steckii, Penicillium chrysogenum, and Aspergillus oryzae. P. chrysogenum was the most frequent isolate which was seen in 14 of a total of 34 isolates (41.2%), followed by P. adametzii and A. oryzae with seven isolates each (20.6%) and the least was P. steckii with six isolates (17.6%). Penicillium species comprised 27 of the total 34 (79.4%) isolates. Sequence analysis of the ITS regions of the nuclear encoded rDNA showed significant alignments for P. chrysogenum, P. adametzii and A. oryzae. Most of these fungal isolates are useful and are rarely pathogenic; however they can still produce severe illness in immune-compromised individuals, and sometimes otherwise healthy people may also become infected. It is therefore necessary to evaluate the possible production of mycotoxins by these fungi to determine a potential danger and to establish its epidemiology in order to develop adequate methods of control.     

Species-specific molecular signature of Commiphora species of Saudi Arabia inferred from internal transcribed spacer sequences of nuclear ribosomal DNA

The deciduous habit and tendency to produce flowers prior to developing leaves, and a predominantly dioecious system of breeding in the genus Commiphora leads to difficulties in its taxonomic identification at species level. The characteristics of easy amplification by universal primer, shorter length and higher discrimination power at the species level makes the internal transcribed spacer (ITS) sequence of nuclear ribosomal DNA (nrDNA) to a smart gene for generating species-specific phylogenetic inferences in most of the plants groups. The present study deals the ITS sequence of nrDNA based molecular genotyping of seven species of the genus Commiphora of Saudi Arabia. The molecular phylogenetic analysis of ITS sequences of nrDNA of Commiphora species distributed in Saudi Arabia reveals the the occurrence of C. madagascariens in Saudi Arabia.     

Two new Middle Devonian megaspores from Saudi Arabia

Two new megaspore species, Biharisporites jubahensis and Verrucisporites yabrinensis, are described from the Middle Devonian Jubah Formation of south central Saudi Arabia. Miospore-based biostratigraphy indicates that the age of the megaspore-bearing interval is no older than the early Givetian Geminospora lemurata Interval Zone, and not younger than Givetian. The presence of similar species in both Arctic Canada and Saudi Arabia suggests that the megaspore-producing plants achieved wide distribution in the Middle Devonian.     

Early to Middle Devonian miospores from northern Saudi Arabia

Well-preserved palynomorph assemblages are recovered from the Devonian Jauf and Jubah formations in five shallow boreholes in the northern part of Saudi Arabia. These fully cored boreholes overlap stratigraphically to form a 1640 ft composite sequence. Miospores dominate the palynological assemblages of most samples. The assemblages are mainly composed of trilete spores but also contain cryptospores and monolete spores. One new genus, sixteen new species and two new varieties of miospores are described from the studied assemblages: Artemopyrainconspicua nov. sp., Artemopyrarecticosta nov. sp., Camarozonotriletesfilatoffii nov. sp., Camarozonotriletesrugulosus nov. sp., Cymbohilatesbaqaensis nov. sp., Cymbohilatescomptulus nov. sp., Cymbohilatesheteroverrucosus nov. sp., Cymbosporitesasymmetricus nov. sp., Dibolisporitespilatus nov. sp., Dictyotriletesbiornatus nov. sp., Gneudnasporadivellomedia (Chibrikova) Balme, 1988 var. divellomedia, Gneudnasporadivellomedia (Chibrikova) Balme, 1988 var. minor nov. var., Latosporitesovalis nov. sp., Scylasporacostulosa nov. sp., Squamisporaarabica nov. gen. and sp., Stellatisporamulticostata nov. sp., Zonotriletesarmillatus nov. sp. and Zonotriletessimplicissimus nov. sp. Their stratigraphic distribution is compared to the well-established Devonian West European zonation of Streel et al. (1987) (Streel, M., Higgs, K.T., Loboziak, S., Riegel, W., Steemans, P., 1987. Spore stratigraphy and correlation with faunas and floras in the type marine Devonian of the Ardenne-Rhenish region. Review of Palaeobotany and Palynology 50, 211-219). A late Pragian-Givetian age is suggested for this sequence. No characteristic Eifelian taxa are recorded, but this could be explained by a gap in palyniferous samples.     

Biodegradation of nonylphenol in mangrove sediment

This study investigated the biodegradation of nonylphenol (NP) in mangrove sediments collected at five sites along the Tanshui River in northern Taiwan. NP biodegradation rate constants (k₁) and half-lives (t_1/2) ranged from 0.039 to 0.139 day⁻¹ and 5.0 to 17.8 days, respectively. The biodegradation of NP was enhanced by the addition of yeast extract, hydrogen peroxide, brij 35, sodium chloride, or cellulose. However, NP biodegradation was inhibited by the addition of humic acid, heavy metals, or phthalic acid esters (PAEs). Of the microorganism strains isolated from the mangrove sediment, we found that strains A9, A10 and A13 (all identified as Bacillus sp.) expressed the best biodegrading ability. NP biodegradation rate constants (k₁) and half-lives (t_1/2) by the three strains ranged from 0.291 to 0.630 day⁻¹ and 1.1 to 2.4 days, respectively. The highest NP biodegradation rate was found in the sediment with the inoculation containing strains A9, A10 and A13, whereas the sediment without any inoculation had the lowest biodegradation rate.     

Ex-situ conservation of wheat genetic resources from Saudi Arabia

Wheat (Triticum L.) is one of the major food crops of the world, and an important component of food security. The aim of this study was to collect and preserve seeds of wheat growing in eight regions of the Kingdom of Saudi Arabia (Al-Qassim, Asir, Al-Taif, Najran, AL-Baha, Jazan, Al-Madinah and Wadi Al-Dawasir) where wheat has been cultivated since ancient times. Sixty-one accessions/samples of wheat (Triticum aestivum) were collected and placed in dry storage (ex-situ conservation) at −18 °C (i.e. permanent storage). The accessions of local wheat have the ability to grow under harsh environmental conditions such as (high temperature, drought and salinity). Most of these samples were collected directly from farms, but a few were collected from markets. The most important criteria for ex-situ conservation is that seeds need to have a low moisture content (MC) and a high percentage viability. Seed MC was measured for all 61 accessions by the oven-drying method and seed viability was tested in three ways: percentage of germination, tetrazolium chloride testing, and X-ray radiography.The seed MC of the 61 accessions was uniformly very low (0.10–0.12%), and 97 to 100% of the seeds were viable. Thus, all 61 wheat accessions collected in this study have the initial requirements to remain viable for long periods of time in ex-situ conservation in the gene seed bank.     

The frequency of middle phalangeal hair in Saudi Arabia.

Middle phalangeal hair was found to be present in 71% if Saudi Arabian males. For those exhibiting this trait, the frequency of combinations of digits with hair was similar to the frequency in other populations.     

Population dynamics and fecundity estimates of Long-spined Black Sea Urchin Diadema savignyi (Audouin, 1890) from the Red Sea,Saudi Arabia

Sea Urchin is not only the crucial keystone species for the coral reef restoration but also it has antimicrobial and anti-cancer activities. This study undertaken to focus on length weight relationship, size fecundity distribution and the estimation of fecundity from the long-spined Sea Urchin, Diadema savignyi at the coastal water of the middle Red Sea, Saudi Arabia. A total of 633 specimen of D. savignyi has been collected from the coastal water of Obhur Creak during the sampling time. In each species, total length (TL) measured as a TW = 11.908 × 0.9995 (R² = 0.8975) through the linear regression graph and digital slide callipers and, individual body weight estimated by the digital balance. The natural and fishing mortality 2.02/yr and 0.19/yr respectively has documented from study area. The Asymptotic length value (L∞) (cm) were estimated 7.35 where the growth coefficient (K) was 0.67 from the monthly length-frequency numeric data by using FAO FISAT II software for generating and estimating the population parameters and age. However, the recruitment pattern was observed to be increased gradually with the maximum recruitment peak between the months of September and October 2021. Therefore, the estimation of fecundity varied from 49,226 ova (total length 3.1 cm) to 466,133 ova (total length 6.8). As a result, analysis of the relationship between the absolute fecundity (F) and total length (TL), and between the fecundity and drained body weight (DW), revealed a linear regression model with a positive and significant relationship at p < 0.05. This is the first approach to study the detailed population dynamic of the ecologically and economically important tropical long spine sea urchin (D. savignyi) endemic to the region. However, the result so far obtained from this research would greatly be useful towards the understanding of the detailed population structure and growth patterns that will undoubtedly help us to develop captive breeding, seed production, culture protocols, conservation strategies and isolation bioactive compounds of this high-valued species incommensurate with national and international perspectives.     

Biodegradation of diesel fuel by a microbial consortium in the presence of 1-alkoxymethyl-2-methyl-5-hydroxypyridinium chloride homologues

Fast development of ionic liquids as gaining more and more attention valuable chemicals will undoubtedly lead to environmental pollution. New formulations and application of ionic liquids may result in contamination in the presence of hydrophobic compounds, such as petroleum mixtures. We hypothesize that in the presence of diesel fuel low-water-soluble ionic liquids may become more toxic to hydrocarbon-degrading microorganisms. In this study the influence of 1-alkoxymethyl-2-methyl-5-hydroxypyridinium chloride homologues (side-chain length from C₃ to C₁₈) on biodegradation of diesel fuel by a bacterial consortium was investigated. Whereas test performed for the consortium cultivated on disodium succinate showed that toxicity of the investigated ionic liquids decreased with increase in side-chain length, only higher homologues (C₈–C₁₈) caused a decrease in diesel fuel biodegradation. As a result of exposure to toxic compounds also modification in cell surface hydrophobicity was observed (MATH). Disulphine blue active substances method was employed to determine partitioning index of ionic liquids between water and diesel fuel phase, which varied from 1.1 to 51% for C₃ and C₁₈ homologues, respectively. We conclude that in the presence of hydrocarbons acting as a solvent, the increased bioavailability of hydrophobic homologues is responsible for the decrease in biodegradation efficiency of diesel fuel.     

Conservation in Saudi Arabia; moving from strategy to practice

Conservation in the Kingdom of Saudi Arabia is relatively young, yet have made considerable gains in conservation through strategic proclamation and reintroductions. Changes in land use, illegal hunting and competition with domestic stock has decimated the native ungulates, meaning that the survival of the native ungulate species is now completely dependent on protected area network. The challenge is to sustain this network to make meaningful conservation impact into the future. We review the status of ungulate conservation in Saudi Arabia and highlight that the conservation strategy is well developed. The major challenge faced in conservation in Saudi Arabia now is to implement what has been sanctioned.     

Ctenodactylids from the Lower and Middle Miocene of Saudi Arabia

The ctenodactylids from the Lower and Middle Miocene of Saudi Arabia are represented by two species: Sayimys intermedius (Sen and Thomas, 1979) and Sayimys assarrarensis sp. nov. This new taxon differs from the other species of Sayimys by its larger size together with an association of characters such as the presence of a metalophulid II in d4 and the strength of the anteroloph and posteroloph in P4. A cladistic analysis involving Prosayimys flynni , Sayimys obliquidens , S. assarrarensis sp. nov., S. intermedius, S. sivalensis, S. baskini , and Metasayimys curvidens is provided. Sayimys assarrarensis sp. nov. nests between Sayimys obliquidens and Metasayimys curvidens as a relatively primitive taxon.     

Genetic diversity of Moringa peregrina species in Saudi Arabia with ITS sequences

The genus Moringa was the family of Moringaceae and Moringa oleifera and Moringa peregrina are the most famous species of Moringa. M. peregrina is widely grown in Saudi Arabia, Iran and India. Therefore, based on these reports, this study aimed to investigate the first systematic attempt to regulate the genetic diversity of the species M. peregrina in Saudi Arabian samples collected from several geographic locations using internal transcribed sequences. Genomic DNA was separated by CTAB extraction method and PCR was performed. Later on, DNA sequencing was performed for PCR products with ITS. In conclusion, the present study affords the first report on genetic stability of M. peregrina using ITS analysis in Saudi Arabia. Further studies are suggested in order to study in different regions.     

Breast cancer in the eastern province of Saudi Arabia

In the Kingdom of Saudi Arabia (KSA), hospital and population based statistics have shown that breast cancer has the highest crude frequency rate among Saudi women. The scarcity of reports about the disease in the KSA has been the impetus to this analysis about breast cancer in the eastem province of KSA. Data on female patients with invasive breast carcinoma seen at King Fahd Hospital of the University in the eastern province of KSA, were retrospectively reviewed. The analysis intended to examine the pattern of the disease and the outcome for patients. Between 1985 and 1995, 292 patients were identified. Their median age±SD (standard deviation) was 42±10.5 years. Most patients were younger than 50 years (78%) and were predominantly premenopausals (79%). Only 25 (9%) of patients had stage I cancer, whilst 130 (44%), 90 (30%), and 47 (16%) had stage II, III, and IV, respectively. Among patients with known axillary nodal status (242 patients), only 37% were node-negative whilst 32% and 31% had 1–3, and ≥4 positive nodes, respectively. Adjuvant chemotherapy and tamoxifen were commonly offered; nonetheless, other adjuvant modalities were rarely utilised. The median follow-up ±SD of all patients was 62.3±8.9 months: 152 patients (52%) were alive with no evidence of disease, 25 (9%) were alive with evidence of disease, and 115 (39%) were dead from breast cancer or its related complications. The median survival of the entire group was not obtained, but the 10-year projected survival was 55%. For stage I and II patients, 118 (76%) were alive with a projected 10-year actuarial survival of 64%. On the other hand, only 51 (57%) of patients with stage III disease were alive with a median survival of 41.5 months (95% Confidence interval (CI), 18.9 to 51.3). Patients with stage IV disease demonstrated a poor outcome with a median survival of 23.5 (95%, CI 12.2 to 31.4). Multivariate analyses were performed to explore the influence of independent variables on overall survival (OS) for patients with non-metastatic disease. Besides the expected adverse effect of disease progression, the favourable influence of adjuvant chemotherapy and tamoxifen prevailed. The amount of benefit gained from tamoxifen, however, was small. Similar analyses were undertaken to determine the influence of independent variables on progression-free survival (PFS). These analyses ascertained the adverse effects of advanced stage and the favourable impact of adjuvant chemotherapy. Breast cancer in the KSA has features that are distinctive from those of industrialised countries. Survival data, however, were comparable. The favourable influence of adjuvant chemotherapy was evident on both OS and PFS. Adjuvant tamoxifen, however, had little effect. Due to its infrequent use, the role of other adjuvant modalities could not be asserted.     

Using population dynamics analysis by DGGE to design the bacterial consortium isolated from mangrove sediments for biodegradation of PAHs

There are many PAH-degrading bacteria in mangrove sediments and in order to explore their degradation potential, surface sediment samples were collected from a mangrove area in Fugong, Longhai, Fujian Province of China. A total of 53 strains of PAH-degrading bacteria were isolated from the mangrove sediments, consisting of 14 strains of phenanthrene (Phe), 13 strains of pyrene (Pyr), 13 strains of benzo[a]pyrene (Bap) and 13 strains of mixed PAH (Phe + Pyr + Bap)-degrading bacteria. All of the individual colonies were identified by 16S rDNA sequencing. Based on the information of bacterial PCR-DGGE profiles obtained during enrichment batch culture, Phe, Pyr, Bap and mixed PAH-degrading consortia consisted of F1, F2, F3, F4 and F15 strains, B1, B3, B6, B7 and B13 strains, P1, P2, P3, P5 and P7 strains, M1, M2, M4, M12 and M13 strains, respectively. In addition, the degradation ability of these consortia was also determined. The results showed that both Phe and mixed PAH-degrading consortia had the highest ability to degrade the Phe in a liquid medium, with more than 91% being degraded in 3 days. But the biodegradation percentages of Pyr by Pyr-degrading consortium and Bap by Bap-degrading consortium were relatively lower than that of the Phe-degrading consortium. These results suggested that a higher degradation of PAHs depended on both the bacterial consortium present and the type of PAH compound. Moreover, using the bacterial community structure analysis method, where the consortia consist of different PAH-degrading bacteria, the information from the PCR-DGGE profiles could be used in the bioremediation of PAHs in the future.     

Prevalence of adenoviruses as ocular disease causatives in Saudi Arabia

Although Human Adenoviruses outbreaks are rare, there still could be a potential chance for those viruses to mutate and spread quickly in human populations with severe public health and socioeconomic consequences. Outbreaks often spread fairly quickly with considerable morbidity/mortality. Saudi Arabia’s geopolitical and religious significance bring with it, millions of pilgrims, and tourists yearly. This presents a significant potential for HAdVs epidemics. This review shows that even with the mushrooming serotypes and genotypes, the scholarly knowledge on the nature, structure, transmission, and management of HAdVs is already well-established. Significant research is ongoing on pharmacological interventions, which, presently remain speculative and lacking in effectiveness. This review similarly uncovers a shortage of literature, both recent and dated, on epidemic keratoconjunctivitis in either Saudi Arabia or the Middle East.